data_3TBM # _model_server_result.job_id SO-Ype_sAXCrEhz0perpZg _model_server_result.datetime_utc '2024-10-20 12:45:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tbm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":67}' # _entry.id 3TBM # _exptl.entry_id 3TBM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.82 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE2/S2 (INORGANIC) CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.78 _cell.angle_gamma 90 _cell.entry_id 3TBM _cell.length_a 73.566 _cell.length_b 54.434 _cell.length_c 43.517 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TBM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 44 A CYS 41 1_555 C FE1 FES . A FES 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc2 A SG CYS 46 A CYS 43 1_555 C FE1 FES . A FES 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc3 A SG CYS 55 A CYS 52 1_555 C FE2 FES . A FES 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc4 A ND1 HIS 59 A HIS 56 1_555 C FE2 FES . A FES 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc5 B SG CYS 44 B CYS 41 1_555 D FE1 FES . B FES 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc6 B SG CYS 46 B CYS 43 1_555 D FE1 FES . B FES 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc7 B SG CYS 55 B CYS 52 1_555 D FE2 FES . B FES 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc8 B ND1 HIS 59 B HIS 56 1_555 D FE2 FES . B FES 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? # _chem_comp.formula 'Fe2 S2' _chem_comp.formula_weight 175.82 _chem_comp.id FES _chem_comp.mon_nstd_flag . _chem_comp.name 'FE2/S2 (INORGANIC) CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 FES sing 148 n n FE1 S2 FES sing 149 n n FE2 S1 FES sing 150 n n FE2 S2 FES sing 151 n n # _atom_sites.entry_id 3TBM _atom_sites.fract_transf_matrix[1][1] 0.013593 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00599 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018371 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FES A 1 67 66 FES FES . D 2 FES B 1 67 66 FES FES . E 3 2PE B 1 68 67 2PE 2PE . F 4 TLA B 1 69 68 TLA TLA . G 5 HOH A 1 68 68 HOH HOH . G 5 HOH A 2 69 69 HOH HOH . G 5 HOH A 3 70 1 HOH HOH . G 5 HOH A 4 71 71 HOH HOH . G 5 HOH A 5 72 4 HOH HOH . G 5 HOH A 6 73 5 HOH HOH . G 5 HOH A 7 74 74 HOH HOH . G 5 HOH A 8 75 75 HOH HOH . G 5 HOH A 9 76 6 HOH HOH . G 5 HOH A 10 77 77 HOH HOH . G 5 HOH A 11 78 78 HOH HOH . G 5 HOH A 12 79 79 HOH HOH . G 5 HOH A 13 80 80 HOH HOH . G 5 HOH A 14 81 7 HOH HOH . G 5 HOH A 15 82 9 HOH HOH . G 5 HOH A 16 83 11 HOH HOH . G 5 HOH A 17 84 13 HOH HOH . G 5 HOH A 18 85 85 HOH HOH . G 5 HOH A 19 86 14 HOH HOH . G 5 HOH A 20 87 87 HOH HOH . G 5 HOH A 21 88 16 HOH HOH . G 5 HOH A 22 89 17 HOH HOH . G 5 HOH A 23 90 19 HOH HOH . G 5 HOH A 24 91 20 HOH HOH . G 5 HOH A 25 92 92 HOH HOH . G 5 HOH A 26 93 21 HOH HOH . G 5 HOH A 27 94 22 HOH HOH . G 5 HOH A 28 95 26 HOH HOH . G 5 HOH A 29 96 32 HOH HOH . G 5 HOH A 30 97 33 HOH HOH . G 5 HOH A 31 98 34 HOH HOH . G 5 HOH A 32 99 38 HOH HOH . G 5 HOH A 33 100 42 HOH HOH . G 5 HOH A 34 101 45 HOH HOH . G 5 HOH A 35 102 102 HOH HOH . G 5 HOH A 36 103 47 HOH HOH . G 5 HOH A 37 104 104 HOH HOH . G 5 HOH A 38 105 105 HOH HOH . G 5 HOH A 39 106 106 HOH HOH . G 5 HOH A 40 107 49 HOH HOH . G 5 HOH A 41 108 108 HOH HOH . G 5 HOH A 42 109 50 HOH HOH . G 5 HOH A 43 110 54 HOH HOH . G 5 HOH A 44 111 58 HOH HOH . G 5 HOH A 45 112 60 HOH HOH . G 5 HOH A 46 113 61 HOH HOH . G 5 HOH A 47 114 65 HOH HOH . G 5 HOH A 48 115 67 HOH HOH . H 5 HOH B 1 70 2 HOH HOH . H 5 HOH B 2 71 3 HOH HOH . H 5 HOH B 3 72 72 HOH HOH . H 5 HOH B 4 73 73 HOH HOH . H 5 HOH B 5 74 8 HOH HOH . H 5 HOH B 6 75 10 HOH HOH . H 5 HOH B 7 76 12 HOH HOH . H 5 HOH B 8 77 15 HOH HOH . H 5 HOH B 9 78 18 HOH HOH . H 5 HOH B 10 79 23 HOH HOH . H 5 HOH B 11 80 24 HOH HOH . H 5 HOH B 12 81 81 HOH HOH . H 5 HOH B 13 82 82 HOH HOH . H 5 HOH B 14 83 83 HOH HOH . H 5 HOH B 15 84 84 HOH HOH . H 5 HOH B 16 85 25 HOH HOH . H 5 HOH B 17 86 86 HOH HOH . H 5 HOH B 18 87 27 HOH HOH . H 5 HOH B 19 88 28 HOH HOH . H 5 HOH B 20 89 29 HOH HOH . H 5 HOH B 21 90 90 HOH HOH . H 5 HOH B 22 91 91 HOH HOH . H 5 HOH B 23 92 30 HOH HOH . H 5 HOH B 24 93 31 HOH HOH . H 5 HOH B 25 94 94 HOH HOH . H 5 HOH B 26 95 95 HOH HOH . H 5 HOH B 27 96 35 HOH HOH . H 5 HOH B 28 97 97 HOH HOH . H 5 HOH B 29 98 98 HOH HOH . H 5 HOH B 30 99 36 HOH HOH . H 5 HOH B 31 100 40 HOH HOH . H 5 HOH B 32 101 101 HOH HOH . H 5 HOH B 33 102 41 HOH HOH . H 5 HOH B 34 103 43 HOH HOH . H 5 HOH B 35 104 44 HOH HOH . H 5 HOH B 36 105 46 HOH HOH . H 5 HOH B 37 106 51 HOH HOH . H 5 HOH B 38 107 107 HOH HOH . H 5 HOH B 39 108 52 HOH HOH . H 5 HOH B 40 109 56 HOH HOH . H 5 HOH B 41 110 57 HOH HOH . H 5 HOH B 42 111 59 HOH HOH . H 5 HOH B 43 112 62 HOH HOH . H 5 HOH B 44 113 63 HOH HOH . H 5 HOH B 45 114 64 HOH HOH . H 5 HOH B 46 115 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 FES . . . D 2 11.661 12.968 22.446 1 16.46 ? FE1 FES 67 B 1 HETATM 2 FE FE2 FES . . . D 2 12.048 10.462 21.333 1 15.09 ? FE2 FES 67 B 1 HETATM 3 S S1 FES . . . D 2 10.674 12.097 20.623 1 15.23 ? S1 FES 67 B 1 HETATM 4 S S2 FES . . . D 2 13.142 11.431 22.974 1 17.82 ? S2 FES 67 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #