data_3TBM # _model_server_result.job_id uj5RUI-bkeoljt05W6qMhA _model_server_result.datetime_utc '2024-10-20 12:35:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tbm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":68}' # _entry.id 3TBM # _exptl.entry_id 3TBM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.488 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NONAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.78 _cell.angle_gamma 90 _cell.entry_id 3TBM _cell.length_a 73.566 _cell.length_b 54.434 _cell.length_c 43.517 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TBM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 44 A CYS 41 1_555 C FE1 FES . A FES 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc2 A SG CYS 46 A CYS 43 1_555 C FE1 FES . A FES 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc3 A SG CYS 55 A CYS 52 1_555 C FE2 FES . A FES 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc4 A ND1 HIS 59 A HIS 56 1_555 C FE2 FES . A FES 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc5 B SG CYS 44 B CYS 41 1_555 D FE1 FES . B FES 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc6 B SG CYS 46 B CYS 43 1_555 D FE1 FES . B FES 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc7 B SG CYS 55 B CYS 52 1_555 D FE2 FES . B FES 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc8 B ND1 HIS 59 B HIS 56 1_555 D FE2 FES . B FES 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? # _chem_comp.formula 'C18 H38 O10' _chem_comp.formula_weight 414.488 _chem_comp.id 2PE _chem_comp.mon_nstd_flag . _chem_comp.name 'NONAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 2PE sing 1 n n O1 HO1 2PE sing 2 n n C2 C3 2PE sing 3 n n C2 H21 2PE sing 4 n n C2 H22 2PE sing 5 n n C3 O4 2PE sing 6 n n C3 H31 2PE sing 7 n n C3 H32 2PE sing 8 n n O4 C5 2PE sing 9 n n C5 C6 2PE sing 10 n n C5 H51 2PE sing 11 n n C5 H52 2PE sing 12 n n C6 O7 2PE sing 13 n n C6 H61 2PE sing 14 n n C6 H62 2PE sing 15 n n O7 C8 2PE sing 16 n n C8 C9 2PE sing 17 n n C8 H81 2PE sing 18 n n C8 H82 2PE sing 19 n n C9 O10 2PE sing 20 n n C9 H91 2PE sing 21 n n C9 H92 2PE sing 22 n n O10 C11 2PE sing 23 n n C11 C12 2PE sing 24 n n C11 H111 2PE sing 25 n n C11 H112 2PE sing 26 n n C12 O13 2PE sing 27 n n C12 H121 2PE sing 28 n n C12 H122 2PE sing 29 n n O13 C14 2PE sing 30 n n C14 C15 2PE sing 31 n n C14 H141 2PE sing 32 n n C14 H142 2PE sing 33 n n C15 O16 2PE sing 34 n n C15 H151 2PE sing 35 n n C15 H152 2PE sing 36 n n O16 C17 2PE sing 37 n n C17 C18 2PE sing 38 n n C17 H171 2PE sing 39 n n C17 H172 2PE sing 40 n n C18 O19 2PE sing 41 n n C18 H181 2PE sing 42 n n C18 H182 2PE sing 43 n n O19 C20 2PE sing 44 n n C20 C21 2PE sing 45 n n C20 H201 2PE sing 46 n n C20 H202 2PE sing 47 n n C21 O22 2PE sing 48 n n C21 H211 2PE sing 49 n n C21 H212 2PE sing 50 n n O22 C23 2PE sing 51 n n C23 C24 2PE sing 52 n n C23 H231 2PE sing 53 n n C23 H232 2PE sing 54 n n C24 O25 2PE sing 55 n n C24 H241 2PE sing 56 n n C24 H242 2PE sing 57 n n O25 C26 2PE sing 58 n n C26 C27 2PE sing 59 n n C26 H261 2PE sing 60 n n C26 H262 2PE sing 61 n n C27 O28 2PE sing 62 n n C27 H271 2PE sing 63 n n C27 H272 2PE sing 64 n n O28 HO2 2PE sing 65 n n # _atom_sites.entry_id 3TBM _atom_sites.fract_transf_matrix[1][1] 0.013593 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00599 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018371 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FES A 1 67 66 FES FES . D 2 FES B 1 67 66 FES FES . E 3 2PE B 1 68 67 2PE 2PE . F 4 TLA B 1 69 68 TLA TLA . G 5 HOH A 1 68 68 HOH HOH . G 5 HOH A 2 69 69 HOH HOH . G 5 HOH A 3 70 1 HOH HOH . G 5 HOH A 4 71 71 HOH HOH . G 5 HOH A 5 72 4 HOH HOH . G 5 HOH A 6 73 5 HOH HOH . G 5 HOH A 7 74 74 HOH HOH . G 5 HOH A 8 75 75 HOH HOH . G 5 HOH A 9 76 6 HOH HOH . G 5 HOH A 10 77 77 HOH HOH . G 5 HOH A 11 78 78 HOH HOH . G 5 HOH A 12 79 79 HOH HOH . G 5 HOH A 13 80 80 HOH HOH . G 5 HOH A 14 81 7 HOH HOH . G 5 HOH A 15 82 9 HOH HOH . G 5 HOH A 16 83 11 HOH HOH . G 5 HOH A 17 84 13 HOH HOH . G 5 HOH A 18 85 85 HOH HOH . G 5 HOH A 19 86 14 HOH HOH . G 5 HOH A 20 87 87 HOH HOH . G 5 HOH A 21 88 16 HOH HOH . G 5 HOH A 22 89 17 HOH HOH . G 5 HOH A 23 90 19 HOH HOH . G 5 HOH A 24 91 20 HOH HOH . G 5 HOH A 25 92 92 HOH HOH . G 5 HOH A 26 93 21 HOH HOH . G 5 HOH A 27 94 22 HOH HOH . G 5 HOH A 28 95 26 HOH HOH . G 5 HOH A 29 96 32 HOH HOH . G 5 HOH A 30 97 33 HOH HOH . G 5 HOH A 31 98 34 HOH HOH . G 5 HOH A 32 99 38 HOH HOH . G 5 HOH A 33 100 42 HOH HOH . G 5 HOH A 34 101 45 HOH HOH . G 5 HOH A 35 102 102 HOH HOH . G 5 HOH A 36 103 47 HOH HOH . G 5 HOH A 37 104 104 HOH HOH . G 5 HOH A 38 105 105 HOH HOH . G 5 HOH A 39 106 106 HOH HOH . G 5 HOH A 40 107 49 HOH HOH . G 5 HOH A 41 108 108 HOH HOH . G 5 HOH A 42 109 50 HOH HOH . G 5 HOH A 43 110 54 HOH HOH . G 5 HOH A 44 111 58 HOH HOH . G 5 HOH A 45 112 60 HOH HOH . G 5 HOH A 46 113 61 HOH HOH . G 5 HOH A 47 114 65 HOH HOH . G 5 HOH A 48 115 67 HOH HOH . H 5 HOH B 1 70 2 HOH HOH . H 5 HOH B 2 71 3 HOH HOH . H 5 HOH B 3 72 72 HOH HOH . H 5 HOH B 4 73 73 HOH HOH . H 5 HOH B 5 74 8 HOH HOH . H 5 HOH B 6 75 10 HOH HOH . H 5 HOH B 7 76 12 HOH HOH . H 5 HOH B 8 77 15 HOH HOH . H 5 HOH B 9 78 18 HOH HOH . H 5 HOH B 10 79 23 HOH HOH . H 5 HOH B 11 80 24 HOH HOH . H 5 HOH B 12 81 81 HOH HOH . H 5 HOH B 13 82 82 HOH HOH . H 5 HOH B 14 83 83 HOH HOH . H 5 HOH B 15 84 84 HOH HOH . H 5 HOH B 16 85 25 HOH HOH . H 5 HOH B 17 86 86 HOH HOH . H 5 HOH B 18 87 27 HOH HOH . H 5 HOH B 19 88 28 HOH HOH . H 5 HOH B 20 89 29 HOH HOH . H 5 HOH B 21 90 90 HOH HOH . H 5 HOH B 22 91 91 HOH HOH . H 5 HOH B 23 92 30 HOH HOH . H 5 HOH B 24 93 31 HOH HOH . H 5 HOH B 25 94 94 HOH HOH . H 5 HOH B 26 95 95 HOH HOH . H 5 HOH B 27 96 35 HOH HOH . H 5 HOH B 28 97 97 HOH HOH . H 5 HOH B 29 98 98 HOH HOH . H 5 HOH B 30 99 36 HOH HOH . H 5 HOH B 31 100 40 HOH HOH . H 5 HOH B 32 101 101 HOH HOH . H 5 HOH B 33 102 41 HOH HOH . H 5 HOH B 34 103 43 HOH HOH . H 5 HOH B 35 104 44 HOH HOH . H 5 HOH B 36 105 46 HOH HOH . H 5 HOH B 37 106 51 HOH HOH . H 5 HOH B 38 107 107 HOH HOH . H 5 HOH B 39 108 52 HOH HOH . H 5 HOH B 40 109 56 HOH HOH . H 5 HOH B 41 110 57 HOH HOH . H 5 HOH B 42 111 59 HOH HOH . H 5 HOH B 43 112 62 HOH HOH . H 5 HOH B 44 113 63 HOH HOH . H 5 HOH B 45 114 64 HOH HOH . H 5 HOH B 46 115 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 2PE . . . E 3 17.374 8.308 29.096 1 40.61 ? O1 2PE 68 B 1 HETATM 2 C C2 2PE . . . E 3 16.402 7.29 29.341 1 38.24 ? C2 2PE 68 B 1 HETATM 3 C C3 2PE . . . E 3 15.399 7.261 28.193 1 37.06 ? C3 2PE 68 B 1 HETATM 4 O O4 2PE . . . E 3 14.893 5.933 28.039 1 31.91 ? O4 2PE 68 B 1 HETATM 5 C C5 2PE . . . E 3 13.59 5.802 28.6 1 30.06 ? C5 2PE 68 B 1 HETATM 6 C C6 2PE . . . E 3 12.751 4.737 27.876 1 25.2 ? C6 2PE 68 B 1 HETATM 7 O O7 2PE . . . E 3 13.53 4.003 26.931 1 25.47 ? O7 2PE 68 B 1 HETATM 8 C C8 2PE . . . E 3 12.679 3.44 25.925 1 25.48 ? C8 2PE 68 B 1 HETATM 9 C C9 2PE . . . E 3 13.524 2.562 25.002 1 25.36 ? C9 2PE 68 B 1 HETATM 10 O O10 2PE . . . E 3 14.298 3.442 24.194 1 22.19 ? O10 2PE 68 B 1 HETATM 11 C C11 2PE . . . E 3 15.352 2.786 23.494 1 22.07 ? C11 2PE 68 B 1 HETATM 12 C C12 2PE . . . E 3 16.356 3.843 23.036 1 20.24 ? C12 2PE 68 B 1 HETATM 13 O O13 2PE . . . E 3 15.855 4.661 21.964 1 18.41 ? O13 2PE 68 B 1 HETATM 14 C C14 2PE . . . E 3 17.03 4.954 21.211 1 21.2 ? C14 2PE 68 B 1 HETATM 15 C C15 2PE . . . E 3 16.984 6.382 20.708 1 24.15 ? C15 2PE 68 B 1 HETATM 16 O O16 2PE . . . E 3 15.901 6.493 19.826 1 26.86 ? O16 2PE 68 B 1 HETATM 17 C C17 2PE . . . E 3 16.078 5.625 18.735 1 26.46 ? C17 2PE 68 B 1 HETATM 18 C C18 2PE . . . E 3 15.537 6.362 17.52 1 26.71 ? C18 2PE 68 B 1 HETATM 19 O O19 2PE . . . E 3 15.61 5.458 16.405 1 24.36 ? O19 2PE 68 B 1 HETATM 20 C C20 2PE . . . E 3 16.964 5.051 16.221 1 20.15 ? C20 2PE 68 B 1 HETATM 21 C C21 2PE . . . E 3 17.209 4.106 15.046 1 23.57 ? C21 2PE 68 B 1 HETATM 22 O O22 2PE . . . E 3 18.057 2.98 15.403 1 28.9 ? O22 2PE 68 B 1 HETATM 23 C C23 2PE . . . E 3 18.592 3.084 16.726 1 32.12 ? C23 2PE 68 B 1 HETATM 24 C C24 2PE . . . E 3 19.368 1.828 17.141 1 37.19 ? C24 2PE 68 B 1 HETATM 25 O O25 2PE . . . E 3 20.655 1.78 16.508 1 41.23 ? O25 2PE 68 B 1 HETATM 26 C C26 2PE . . . E 3 21.621 1.099 17.305 1 44.5 ? C26 2PE 68 B 1 HETATM 27 C C27 2PE . . . E 3 22.969 1.104 16.595 1 46.69 ? C27 2PE 68 B 1 HETATM 28 O O28 2PE . . . E 3 22.846 0.33 15.396 1 48.11 ? O28 2PE 68 B 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 28 #