data_3TCP # _model_server_result.job_id H0bGEL2MZ9OFOrXCsEmOBg _model_server_result.datetime_utc '2024-11-19 08:49:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tcp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2}' # _entry.id 3TCP # _exptl.entry_id 3TCP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 396.504 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(trans-4-aminocyclohexyl)methyl]-N-butyl-3-(4-fluorophenyl)-1H-pyrazolo[3,4-d]pyrimidin-6-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.35 _cell.angle_gamma 90 _cell.entry_id 3TCP _cell.length_a 51.158 _cell.length_b 91.142 _cell.length_c 68.356 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TCP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1 B,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E CA CA . A CA 12 1_555 A OD1 ASP 292 A ASP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? metalc ? metalc2 F CA CA . A CA 13 1_555 A OD2 ASP 276 A ASP 827 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc3 F CA CA . A CA 13 1_555 A OD1 ASP 276 A ASP 827 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? metalc ? metalc4 J CA CA . B CA 11 1_555 L O HOH . B HOH 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc5 J CA CA . B CA 11 1_555 B OD1 ASP 276 B ASP 827 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? # _chem_comp.formula 'C22 H29 F N6' _chem_comp.formula_weight 396.504 _chem_comp.id CKJ _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(trans-4-aminocyclohexyl)methyl]-N-butyl-3-(4-fluorophenyl)-1H-pyrazolo[3,4-d]pyrimidin-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C CKJ doub 70 n y C C06 CKJ sing 71 n y C H CKJ sing 72 n n F C09 CKJ sing 73 n n C31 N CKJ doub 74 n y N N02 CKJ sing 75 n y C32 C01 CKJ sing 76 n n C01 C33 CKJ sing 77 n n C01 C35 CKJ sing 78 n n C01 H01 CKJ sing 79 n n C25 N01 CKJ sing 80 n n N01 C02 CKJ sing 81 n n N01 HN01 CKJ sing 82 n n C02 C03 CKJ sing 83 n n C02 H02 CKJ sing 84 n n C02 H02A CKJ sing 85 n n N02 C28 CKJ sing 86 n y N02 C32 CKJ sing 87 n n C03 C04 CKJ sing 88 n n C03 H03 CKJ sing 89 n n C03 H03A CKJ sing 90 n n C05 C04 CKJ sing 91 n n C04 H04 CKJ sing 92 n n C04 H04A CKJ sing 93 n n C05 H05 CKJ sing 94 n n C05 H05A CKJ sing 95 n n C05 H05B CKJ sing 96 n n C07 C06 CKJ doub 97 n y C06 C31 CKJ sing 98 n n C08 C07 CKJ sing 99 n y C07 H07 CKJ sing 100 n n C09 C08 CKJ doub 101 n y C08 H08 CKJ sing 102 n n C09 C10 CKJ sing 103 n y C10 H10 CKJ sing 104 n n C27 C23 CKJ doub 105 n y C23 N24 CKJ sing 106 n y C23 H23 CKJ sing 107 n n N24 C25 CKJ doub 108 n y N26 C25 CKJ sing 109 n y C28 N26 CKJ doub 110 n y C31 C27 CKJ sing 111 n y C27 C28 CKJ sing 112 n y C32 H32 CKJ sing 113 n n C32 H32A CKJ sing 114 n n C33 C38 CKJ sing 115 n n C33 H33 CKJ sing 116 n n C33 H33A CKJ sing 117 n n C35 C36 CKJ sing 118 n n C35 H35 CKJ sing 119 n n C35 H35A CKJ sing 120 n n C36 C37 CKJ sing 121 n n C36 H36 CKJ sing 122 n n C36 H36A CKJ sing 123 n n C38 C37 CKJ sing 124 n n C37 N39 CKJ sing 125 n n C37 H37 CKJ sing 126 n n C38 H38 CKJ sing 127 n n C38 H38A CKJ sing 128 n n N39 HN39 CKJ sing 129 n n N39 HN3A CKJ sing 130 n n # _atom_sites.entry_id 3TCP _atom_sites.fract_transf_matrix[1][1] 0.019547 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00357 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010972 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014871 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CKJ A 1 1 1 CKJ CKJ . D 3 CL A 1 865 865 CL CL . E 4 CA A 1 12 12 CA CA . F 4 CA A 1 13 13 CA CA . G 2 CKJ B 1 2 2 CKJ CKJ . H 3 CL B 1 865 865 CL CL . I 3 CL B 1 3 3 CL CL . J 4 CA B 1 11 11 CA CA . K 5 HOH A 1 2 2 HOH HOH . K 5 HOH A 2 3 3 HOH HOH . K 5 HOH A 3 5 5 HOH HOH . K 5 HOH A 4 11 11 HOH HOH . K 5 HOH A 5 14 14 HOH HOH . K 5 HOH A 6 19 19 HOH HOH . K 5 HOH A 7 20 20 HOH HOH . K 5 HOH A 8 21 21 HOH HOH . K 5 HOH A 9 22 22 HOH HOH . K 5 HOH A 10 31 31 HOH HOH . K 5 HOH A 11 41 41 HOH HOH . K 5 HOH A 12 47 47 HOH HOH . K 5 HOH A 13 49 49 HOH HOH . K 5 HOH A 14 52 52 HOH HOH . K 5 HOH A 15 56 56 HOH HOH . K 5 HOH A 16 60 60 HOH HOH . K 5 HOH A 17 866 866 HOH HOH . L 5 HOH B 1 7 7 HOH HOH . L 5 HOH B 2 16 16 HOH HOH . L 5 HOH B 3 17 17 HOH HOH . L 5 HOH B 4 18 18 HOH HOH . L 5 HOH B 5 23 23 HOH HOH . L 5 HOH B 6 24 24 HOH HOH . L 5 HOH B 7 29 29 HOH HOH . L 5 HOH B 8 32 32 HOH HOH . L 5 HOH B 9 37 37 HOH HOH . L 5 HOH B 10 39 39 HOH HOH . L 5 HOH B 11 48 48 HOH HOH . L 5 HOH B 12 50 50 HOH HOH . L 5 HOH B 13 54 54 HOH HOH . L 5 HOH B 14 57 57 HOH HOH . L 5 HOH B 15 61 61 HOH HOH . L 5 HOH B 16 66 66 HOH HOH . L 5 HOH B 17 67 67 HOH HOH . L 5 HOH B 18 73 73 HOH HOH . L 5 HOH B 19 74 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C CKJ . . . G 2 0.351 20.066 21.069 1 51.31 ? C CKJ 2 B 1 HETATM 2 F F CKJ . . . G 2 -1.446 18.99 24.062 1 52.54 ? F CKJ 2 B 1 HETATM 3 N N CKJ . . . G 2 3.776 18.704 20.321 1 51.07 ? N CKJ 2 B 1 HETATM 4 C C01 CKJ . . . G 2 5.806 17.678 17.645 1 50.75 ? C01 CKJ 2 B 1 HETATM 5 N N01 CKJ . . . G 2 4.284 22.832 16.22 1 47.89 ? N01 CKJ 2 B 1 HETATM 6 C C02 CKJ . . . G 2 5.395 22.399 15.379 1 47.1 ? C02 CKJ 2 B 1 HETATM 7 N N02 CKJ . . . G 2 4.615 19.129 19.298 1 50.67 ? N02 CKJ 2 B 1 HETATM 8 C C03 CKJ . . . G 2 5.11 21.175 14.507 1 46.57 ? C03 CKJ 2 B 1 HETATM 9 C C04 CKJ . . . G 2 6.303 20.838 13.612 1 46.21 ? C04 CKJ 2 B 1 HETATM 10 C C05 CKJ . . . G 2 7.46 20.223 14.376 1 46.1 ? C05 CKJ 2 B 1 HETATM 11 C C06 CKJ . . . G 2 1.585 19.452 21.289 1 51.24 ? C06 CKJ 2 B 1 HETATM 12 C C07 CKJ . . . G 2 1.79 18.68 22.434 1 51.25 ? C07 CKJ 2 B 1 HETATM 13 C C08 CKJ . . . G 2 0.769 18.527 23.366 1 51.91 ? C08 CKJ 2 B 1 HETATM 14 C C09 CKJ . . . G 2 -0.464 19.142 23.152 1 51.93 ? C09 CKJ 2 B 1 HETATM 15 C C10 CKJ . . . G 2 -0.674 19.913 22.003 1 51.47 ? C10 CKJ 2 B 1 HETATM 16 C C23 CKJ . . . G 2 2.184 21.655 18.875 1 49.05 ? C23 CKJ 2 B 1 HETATM 17 N N24 CKJ . . . G 2 2.663 22.389 17.85 1 47.65 ? N24 CKJ 2 B 1 HETATM 18 C C25 CKJ . . . G 2 3.832 22.082 17.25 1 48.35 ? C25 CKJ 2 B 1 HETATM 19 N N26 CKJ . . . G 2 4.561 21.014 17.665 1 49.94 ? N26 CKJ 2 B 1 HETATM 20 C C27 CKJ . . . G 2 2.913 20.549 19.313 1 50.5 ? C27 CKJ 2 B 1 HETATM 21 C C28 CKJ . . . G 2 4.06 20.247 18.721 1 50.69 ? C28 CKJ 2 B 1 HETATM 22 C C31 CKJ . . . G 2 2.716 19.579 20.323 1 51.11 ? C31 CKJ 2 B 1 HETATM 23 C C32 CKJ . . . G 2 5.873 18.473 18.948 1 50.71 ? C32 CKJ 2 B 1 HETATM 24 C C33 CKJ . . . G 2 6.941 16.653 17.658 1 49.85 ? C33 CKJ 2 B 1 HETATM 25 C C35 CKJ . . . G 2 4.457 16.971 17.464 1 50.89 ? C35 CKJ 2 B 1 HETATM 26 C C36 CKJ . . . G 2 4.443 16.023 16.261 1 50.58 ? C36 CKJ 2 B 1 HETATM 27 C C37 CKJ . . . G 2 5.618 15.039 16.297 1 50.62 ? C37 CKJ 2 B 1 HETATM 28 C C38 CKJ . . . G 2 6.931 15.808 16.393 1 49.73 ? C38 CKJ 2 B 1 HETATM 29 N N39 CKJ . . . G 2 5.628 14.218 15.1 1 51.07 ? N39 CKJ 2 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 29 #