data_3TD8
#
_model_server_result.job_id            iSIVpPdBVUCFucBjxKBUrg 
_model_server_result.datetime_utc      '2024-11-25 07:22:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3td8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    3TD8 
#
_exptl.entry_id    3TD8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.2 
_cell.angle_gamma         90 
_cell.entry_id            3TD8 
_cell.length_a            36.123 
_cell.length_b            42.63 
_cell.length_c            59.894 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3TD8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 292 n n 
PA O2A NDP sing 293 n n 
PA O5B NDP sing 294 n n 
PA O3 NDP sing 295 n n 
O2A HOA2 NDP sing 296 n n 
O5B C5B NDP sing 297 n n 
C5B C4B NDP sing 298 n n 
C5B H51A NDP sing 299 n n 
C5B H52A NDP sing 300 n n 
C4B O4B NDP sing 301 n n 
C4B C3B NDP sing 302 n n 
C4B H4B NDP sing 303 n n 
O4B C1B NDP sing 304 n n 
C3B O3B NDP sing 305 n n 
C3B C2B NDP sing 306 n n 
C3B H3B NDP sing 307 n n 
O3B HO3A NDP sing 308 n n 
C2B O2B NDP sing 309 n n 
C2B C1B NDP sing 310 n n 
C2B H2B NDP sing 311 n n 
O2B P2B NDP sing 312 n n 
C1B N9A NDP sing 313 n n 
C1B H1B NDP sing 314 n n 
N9A C8A NDP sing 315 n y 
N9A C4A NDP sing 316 n y 
C8A N7A NDP doub 317 n y 
C8A H8A NDP sing 318 n n 
N7A C5A NDP sing 319 n y 
C5A C6A NDP sing 320 n y 
C5A C4A NDP doub 321 n y 
C6A N6A NDP sing 322 n n 
C6A N1A NDP doub 323 n y 
N6A H61A NDP sing 324 n n 
N6A H62A NDP sing 325 n n 
N1A C2A NDP sing 326 n y 
C2A N3A NDP doub 327 n y 
C2A H2A NDP sing 328 n n 
N3A C4A NDP sing 329 n y 
O3 PN NDP sing 330 n n 
PN O1N NDP doub 331 n n 
PN O2N NDP sing 332 n n 
PN O5D NDP sing 333 n n 
O2N H21N NDP sing 334 n n 
O5D C5D NDP sing 335 n n 
C5D C4D NDP sing 336 n n 
C5D H51N NDP sing 337 n n 
C5D H52N NDP sing 338 n n 
C4D O4D NDP sing 339 n n 
C4D C3D NDP sing 340 n n 
C4D H4D NDP sing 341 n n 
O4D C1D NDP sing 342 n n 
C3D O3D NDP sing 343 n n 
C3D C2D NDP sing 344 n n 
C3D H3D NDP sing 345 n n 
O3D HO3N NDP sing 346 n n 
C2D O2D NDP sing 347 n n 
C2D C1D NDP sing 348 n n 
C2D H2D NDP sing 349 n n 
O2D HO2N NDP sing 350 n n 
C1D N1N NDP sing 351 n n 
C1D H1D NDP sing 352 n n 
N1N C2N NDP sing 353 n n 
N1N C6N NDP sing 354 n n 
C2N C3N NDP doub 355 n n 
C2N H2N NDP sing 356 n n 
C3N C7N NDP sing 357 n n 
C3N C4N NDP sing 358 n n 
C7N O7N NDP doub 359 n n 
C7N N7N NDP sing 360 n n 
N7N H71N NDP sing 361 n n 
N7N H72N NDP sing 362 n n 
C4N C5N NDP sing 363 n n 
C4N H41N NDP sing 364 n n 
C4N H42N NDP sing 365 n n 
C5N C6N NDP doub 366 n n 
C5N H5N NDP sing 367 n n 
C6N H6N NDP sing 368 n n 
P2B O1X NDP doub 369 n n 
P2B O2X NDP sing 370 n n 
P2B O3X NDP sing 371 n n 
O2X HOP2 NDP sing 372 n n 
O3X HOP3 NDP sing 373 n n 
#
_atom_sites.entry_id                     3TD8 
_atom_sites.fract_transf_matrix[1][1]    0.027683 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002519 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023458 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016765 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NDP A 1 301 1 NDP NAP . 
C 3 D2R A 1 302 1 D2R DRG . 
D 4 HOH A 1 401 1 HOH HOH . 
D 4 HOH A 2 402 2 HOH HOH . 
D 4 HOH A 3 403 3 HOH HOH . 
D 4 HOH A 4 404 4 HOH HOH . 
D 4 HOH A 5 405 6 HOH HOH . 
D 4 HOH A 6 406 7 HOH HOH . 
D 4 HOH A 7 407 8 HOH HOH . 
D 4 HOH A 8 408 9 HOH HOH . 
D 4 HOH A 9 409 11 HOH HOH . 
D 4 HOH A 10 410 12 HOH HOH . 
D 4 HOH A 11 411 13 HOH HOH . 
D 4 HOH A 12 412 14 HOH HOH . 
D 4 HOH A 13 413 15 HOH HOH . 
D 4 HOH A 14 414 16 HOH HOH . 
D 4 HOH A 15 415 17 HOH HOH . 
D 4 HOH A 16 416 18 HOH HOH . 
D 4 HOH A 17 417 19 HOH HOH . 
D 4 HOH A 18 418 20 HOH HOH . 
D 4 HOH A 19 419 21 HOH HOH . 
D 4 HOH A 20 420 22 HOH HOH . 
D 4 HOH A 21 421 23 HOH HOH . 
D 4 HOH A 22 422 24 HOH HOH . 
D 4 HOH A 23 423 25 HOH HOH . 
D 4 HOH A 24 424 26 HOH HOH . 
D 4 HOH A 25 425 27 HOH HOH . 
D 4 HOH A 26 426 28 HOH HOH . 
D 4 HOH A 27 427 29 HOH HOH . 
D 4 HOH A 28 428 30 HOH HOH . 
D 4 HOH A 29 429 31 HOH HOH . 
D 4 HOH A 30 430 32 HOH HOH . 
D 4 HOH A 31 431 33 HOH HOH . 
D 4 HOH A 32 432 35 HOH HOH . 
D 4 HOH A 33 433 36 HOH HOH . 
D 4 HOH A 34 434 37 HOH HOH . 
D 4 HOH A 35 435 38 HOH HOH . 
D 4 HOH A 36 436 39 HOH HOH . 
D 4 HOH A 37 437 40 HOH HOH . 
D 4 HOH A 38 438 41 HOH HOH . 
D 4 HOH A 39 439 42 HOH HOH . 
D 4 HOH A 40 440 43 HOH HOH . 
D 4 HOH A 41 441 44 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . B 2 15.616 4.619 23.043 1 32.34 ? PA NDP 301 A 1 
HETATM 2 O O1A NDP . . . B 2 15.665 4.908 21.586 1 33.23 ? O1A NDP 301 A 1 
HETATM 3 O O2A NDP . . . B 2 14.353 4.264 23.778 1 30.9 ? O2A NDP 301 A 1 
HETATM 4 O O5B NDP . . . B 2 16.144 5.965 23.715 1 32.77 ? O5B NDP 301 A 1 
HETATM 5 C C5B NDP . . . B 2 16.284 6.081 25.161 1 33.27 ? C5B NDP 301 A 1 
HETATM 6 C C4B NDP . . . B 2 16.197 7.486 25.576 1 30.25 ? C4B NDP 301 A 1 
HETATM 7 O O4B NDP . . . B 2 14.978 8.159 25.057 1 33.63 ? O4B NDP 301 A 1 
HETATM 8 C C3B NDP . . . B 2 16.156 7.685 27.053 1 32.93 ? C3B NDP 301 A 1 
HETATM 9 O O3B NDP . . . B 2 17.483 7.874 27.595 1 41.56 ? O3B NDP 301 A 1 
HETATM 10 C C2B NDP . . . B 2 15.416 9.036 27.103 1 33.91 ? C2B NDP 301 A 1 
HETATM 11 O O2B NDP . . . B 2 16.216 10.119 26.592 1 39.22 ? O2B NDP 301 A 1 
HETATM 12 C C1B NDP . . . B 2 14.319 8.854 26.074 1 28.44 ? C1B NDP 301 A 1 
HETATM 13 N N9A NDP . . . B 2 13.177 8.041 26.548 1 32.66 ? N9A NDP 301 A 1 
HETATM 14 C C8A NDP . . . B 2 12.836 6.778 26.224 1 30.4 ? C8A NDP 301 A 1 
HETATM 15 N N7A NDP . . . B 2 11.678 6.432 26.875 1 35.17 ? N7A NDP 301 A 1 
HETATM 16 C C5A NDP . . . B 2 11.313 7.512 27.584 1 31.55 ? C5A NDP 301 A 1 
HETATM 17 C C6A NDP . . . B 2 10.234 7.762 28.42 1 40.94 ? C6A NDP 301 A 1 
HETATM 18 N N6A NDP . . . B 2 9.299 6.802 28.668 1 41.26 ? N6A NDP 301 A 1 
HETATM 19 N N1A NDP . . . B 2 10.158 9.004 28.959 1 34.26 ? N1A NDP 301 A 1 
HETATM 20 C C2A NDP . . . B 2 11.088 9.94 28.737 1 37.4 ? C2A NDP 301 A 1 
HETATM 21 N N3A NDP . . . B 2 12.145 9.737 27.943 1 32.37 ? N3A NDP 301 A 1 
HETATM 22 C C4A NDP . . . B 2 12.277 8.523 27.387 1 28.75 ? C4A NDP 301 A 1 
HETATM 23 O O3 NDP . . . B 2 16.806 3.615 23.402 1 31.7 ? O3 NDP 301 A 1 
HETATM 24 P PN NDP . . . B 2 17.06 2.224 23.86 1 34.25 ? PN NDP 301 A 1 
HETATM 25 O O1N NDP . . . B 2 16.19 1.769 24.978 1 35.02 ? O1N NDP 301 A 1 
HETATM 26 O O2N NDP . . . B 2 18.533 2.16 24.137 1 39.2 ? O2N NDP 301 A 1 
HETATM 27 O O5D NDP . . . B 2 16.919 1.433 22.533 1 34.69 ? O5D NDP 301 A 1 
HETATM 28 C C5D NDP . . . B 2 17.775 1.821 21.347 1 34.76 ? C5D NDP 301 A 1 
HETATM 29 C C4D NDP . . . B 2 18.161 0.506 20.674 1 36.13 ? C4D NDP 301 A 1 
HETATM 30 O O4D NDP . . . B 2 16.912 0.047 20.064 1 37.75 ? O4D NDP 301 A 1 
HETATM 31 C C3D NDP . . . B 2 19.213 0.405 19.539 1 39.74 ? C3D NDP 301 A 1 
HETATM 32 O O3D NDP . . . B 2 19.772 -0.956 19.54 1 41.48 ? O3D NDP 301 A 1 
HETATM 33 C C2D NDP . . . B 2 18.377 0.578 18.323 1 38.1 ? C2D NDP 301 A 1 
HETATM 34 O O2D NDP . . . B 2 19.108 0.134 17.158 1 46.14 ? O2D NDP 301 A 1 
HETATM 35 C C1D NDP . . . B 2 17.256 -0.423 18.693 1 37.1 ? C1D NDP 301 A 1 
HETATM 36 N N1N NDP . . . B 2 16.028 -0.298 17.906 1 31.06 ? N1N NDP 301 A 1 
HETATM 37 C C2N NDP . . . B 2 15.466 -1.414 17.253 1 31.65 ? C2N NDP 301 A 1 
HETATM 38 C C3N NDP . . . B 2 14.291 -1.308 16.528 1 30.38 ? C3N NDP 301 A 1 
HETATM 39 C C7N NDP . . . B 2 13.674 -2.511 15.841 1 28.95 ? C7N NDP 301 A 1 
HETATM 40 O O7N NDP . . . B 2 12.635 -2.419 15.22 1 27.29 ? O7N NDP 301 A 1 
HETATM 41 N N7N NDP . . . B 2 14.361 -3.66 15.83 1 29.01 ? N7N NDP 301 A 1 
HETATM 42 C C4N NDP . . . B 2 13.558 0.049 16.442 1 31.11 ? C4N NDP 301 A 1 
HETATM 43 C C5N NDP . . . B 2 14.264 1.104 17.049 1 28.03 ? C5N NDP 301 A 1 
HETATM 44 C C6N NDP . . . B 2 15.419 0.954 17.799 1 31.71 ? C6N NDP 301 A 1 
HETATM 45 P P2B NDP . . . B 2 17 11.198 27.562 1 35.9 ? P2B NDP 301 A 1 
HETATM 46 O O1X NDP . . . B 2 16.088 11.755 28.606 1 34.88 ? O1X NDP 301 A 1 
HETATM 47 O O2X NDP . . . B 2 17.35 12.3 26.455 1 33.82 ? O2X NDP 301 A 1 
HETATM 48 O O3X NDP . . . B 2 18.184 10.211 28.004 1 33.86 ? O3X NDP 301 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           48 
#