data_3TDA # _model_server_result.job_id gDutCrHbWSFeEHX9nKwcow _model_server_result.datetime_utc '2024-11-22 02:27:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tda # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":600}' # _entry.id 3TDA # _exptl.entry_id 3TDA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TDA _cell.length_a 57.05 _cell.length_b 192.74 _cell.length_c 247.46 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TDA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,R 1 1 B,I,J,K,S 2 1 C,L,M,N,T 3 1 D,O,P,Q,U 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 K N N ? 4 N N N ? 4 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 236 A HIS 258 1_555 G ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc2 A OD2 ASP 248 A ASP 270 1_555 G ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc3 A OE2 GLU 251 A GLU 273 1_555 G ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? metalc ? metalc4 A OD2 ASP 400 A ASP 422 1_555 H ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc5 A ND1 HIS 404 A HIS 426 1_555 H ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc6 A SG CYS 421 A CYS 443 1_555 E FE HEM . A HEM 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc7 F N2 PN0 . A PN0 503 1_555 E FE HEM . A HEM 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc8 H ZN ZN . A ZN 601 1_555 C OD1 ASP 400 C ASP 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc9 H ZN ZN . A ZN 601 1_555 C ND1 HIS 404 C HIS 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc10 B NE2 HIS 236 B HIS 258 1_555 K ZN ZN . B ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? metalc ? metalc11 B OD2 ASP 248 B ASP 270 1_555 K ZN ZN . B ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc12 B OE1 GLU 251 B GLU 273 1_555 K ZN ZN . B ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc13 B SG CYS 421 B CYS 443 1_555 I FE HEM . B HEM 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc14 J N2 PN0 . B PN0 503 1_555 I FE HEM . B HEM 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc15 C NE2 HIS 236 C HIS 258 1_555 N ZN ZN . C ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? metalc ? metalc16 C OD2 ASP 248 C ASP 270 1_555 N ZN ZN . C ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? metalc ? metalc17 C OE2 GLU 251 C GLU 273 1_555 N ZN ZN . C ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? metalc ? metalc18 C SG CYS 421 C CYS 443 1_555 L FE HEM . C HEM 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc19 M N2 PN0 . C PN0 503 1_555 L FE HEM . C HEM 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc20 D NE2 HIS 236 D HIS 258 1_555 Q ZN ZN . D ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? metalc ? metalc21 D OD2 ASP 248 D ASP 270 1_555 Q ZN ZN . D ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc22 D OE1 GLU 251 D GLU 273 1_555 Q ZN ZN . D ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc23 D SG CYS 421 D CYS 443 1_555 O FE HEM . D HEM 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc24 P N2 PN0 . D PN0 503 1_555 O FE HEM . D HEM 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3TDA _atom_sites.fract_transf_matrix[1][1] 0.017528 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005188 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004041 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 800 800 HEM HEM . F 3 PN0 A 1 503 503 PN0 PN0 . G 4 ZN A 1 600 600 ZN ZN . H 4 ZN A 1 601 601 ZN ZN . I 2 HEM B 1 800 800 HEM HEM . J 3 PN0 B 1 503 503 PN0 PN0 . K 4 ZN B 1 600 600 ZN ZN . L 2 HEM C 1 800 800 HEM HEM . M 3 PN0 C 1 503 503 PN0 PN0 . N 4 ZN C 1 600 600 ZN ZN . O 2 HEM D 1 800 800 HEM HEM . P 3 PN0 D 1 503 503 PN0 PN0 . Q 4 ZN D 1 600 600 ZN ZN . R 5 HOH A 1 1 1 HOH HOH . R 5 HOH A 2 9 9 HOH HOH . R 5 HOH A 3 10 10 HOH HOH . R 5 HOH A 4 13 13 HOH HOH . R 5 HOH A 5 14 14 HOH HOH . R 5 HOH A 6 502 502 HOH HOH . R 5 HOH A 7 504 504 HOH HOH . R 5 HOH A 8 505 505 HOH HOH . R 5 HOH A 9 506 506 HOH HOH . R 5 HOH A 10 507 507 HOH HOH . R 5 HOH A 11 508 508 HOH HOH . R 5 HOH A 12 509 509 HOH HOH . R 5 HOH A 13 510 510 HOH HOH . R 5 HOH A 14 511 511 HOH HOH . R 5 HOH A 15 512 512 HOH HOH . R 5 HOH A 16 513 513 HOH HOH . R 5 HOH A 17 514 514 HOH HOH . R 5 HOH A 18 515 515 HOH HOH . R 5 HOH A 19 516 516 HOH HOH . R 5 HOH A 20 517 517 HOH HOH . R 5 HOH A 21 518 518 HOH HOH . R 5 HOH A 22 519 519 HOH HOH . R 5 HOH A 23 520 520 HOH HOH . R 5 HOH A 24 521 521 HOH HOH . R 5 HOH A 25 522 522 HOH HOH . R 5 HOH A 26 523 523 HOH HOH . R 5 HOH A 27 524 524 HOH HOH . R 5 HOH A 28 525 525 HOH HOH . R 5 HOH A 29 526 526 HOH HOH . R 5 HOH A 30 527 527 HOH HOH . R 5 HOH A 31 528 528 HOH HOH . R 5 HOH A 32 529 529 HOH HOH . R 5 HOH A 33 530 530 HOH HOH . R 5 HOH A 34 531 531 HOH HOH . R 5 HOH A 35 532 532 HOH HOH . R 5 HOH A 36 533 533 HOH HOH . R 5 HOH A 37 534 534 HOH HOH . R 5 HOH A 38 535 535 HOH HOH . R 5 HOH A 39 536 536 HOH HOH . R 5 HOH A 40 537 537 HOH HOH . R 5 HOH A 41 538 538 HOH HOH . R 5 HOH A 42 539 539 HOH HOH . R 5 HOH A 43 540 540 HOH HOH . R 5 HOH A 44 541 541 HOH HOH . R 5 HOH A 45 542 542 HOH HOH . R 5 HOH A 46 543 543 HOH HOH . R 5 HOH A 47 544 544 HOH HOH . R 5 HOH A 48 545 545 HOH HOH . R 5 HOH A 49 546 546 HOH HOH . R 5 HOH A 50 547 547 HOH HOH . R 5 HOH A 51 548 548 HOH HOH . R 5 HOH A 52 549 549 HOH HOH . R 5 HOH A 53 550 550 HOH HOH . R 5 HOH A 54 551 551 HOH HOH . R 5 HOH A 55 552 552 HOH HOH . R 5 HOH A 56 553 553 HOH HOH . R 5 HOH A 57 554 554 HOH HOH . R 5 HOH A 58 555 555 HOH HOH . R 5 HOH A 59 556 556 HOH HOH . R 5 HOH A 60 557 557 HOH HOH . R 5 HOH A 61 558 558 HOH HOH . S 5 HOH B 1 6 6 HOH HOH . S 5 HOH B 2 8 8 HOH HOH . S 5 HOH B 3 11 11 HOH HOH . S 5 HOH B 4 15 15 HOH HOH . S 5 HOH B 5 16 16 HOH HOH . S 5 HOH B 6 502 502 HOH HOH . S 5 HOH B 7 504 504 HOH HOH . S 5 HOH B 8 505 505 HOH HOH . S 5 HOH B 9 506 506 HOH HOH . S 5 HOH B 10 507 507 HOH HOH . S 5 HOH B 11 508 508 HOH HOH . S 5 HOH B 12 509 509 HOH HOH . S 5 HOH B 13 510 510 HOH HOH . S 5 HOH B 14 511 511 HOH HOH . S 5 HOH B 15 512 512 HOH HOH . S 5 HOH B 16 513 513 HOH HOH . S 5 HOH B 17 514 514 HOH HOH . S 5 HOH B 18 515 515 HOH HOH . S 5 HOH B 19 516 516 HOH HOH . S 5 HOH B 20 517 517 HOH HOH . S 5 HOH B 21 518 518 HOH HOH . S 5 HOH B 22 519 519 HOH HOH . S 5 HOH B 23 520 520 HOH HOH . S 5 HOH B 24 521 521 HOH HOH . S 5 HOH B 25 522 522 HOH HOH . S 5 HOH B 26 523 523 HOH HOH . S 5 HOH B 27 524 524 HOH HOH . S 5 HOH B 28 525 525 HOH HOH . S 5 HOH B 29 526 526 HOH HOH . S 5 HOH B 30 527 527 HOH HOH . S 5 HOH B 31 528 528 HOH HOH . S 5 HOH B 32 529 529 HOH HOH . S 5 HOH B 33 530 530 HOH HOH . S 5 HOH B 34 531 531 HOH HOH . S 5 HOH B 35 532 532 HOH HOH . S 5 HOH B 36 533 533 HOH HOH . S 5 HOH B 37 534 534 HOH HOH . S 5 HOH B 38 535 535 HOH HOH . S 5 HOH B 39 536 536 HOH HOH . S 5 HOH B 40 537 537 HOH HOH . S 5 HOH B 41 538 538 HOH HOH . S 5 HOH B 42 539 539 HOH HOH . S 5 HOH B 43 540 540 HOH HOH . S 5 HOH B 44 541 541 HOH HOH . S 5 HOH B 45 542 542 HOH HOH . S 5 HOH B 46 543 543 HOH HOH . S 5 HOH B 47 544 544 HOH HOH . S 5 HOH B 48 545 545 HOH HOH . T 5 HOH C 1 2 2 HOH HOH . T 5 HOH C 2 4 4 HOH HOH . T 5 HOH C 3 5 5 HOH HOH . T 5 HOH C 4 17 17 HOH HOH . T 5 HOH C 5 18 18 HOH HOH . T 5 HOH C 6 19 19 HOH HOH . T 5 HOH C 7 20 20 HOH HOH . T 5 HOH C 8 21 21 HOH HOH . T 5 HOH C 9 22 22 HOH HOH . T 5 HOH C 10 502 502 HOH HOH . T 5 HOH C 11 504 504 HOH HOH . T 5 HOH C 12 505 505 HOH HOH . T 5 HOH C 13 506 506 HOH HOH . T 5 HOH C 14 507 507 HOH HOH . T 5 HOH C 15 508 508 HOH HOH . T 5 HOH C 16 509 509 HOH HOH . T 5 HOH C 17 510 510 HOH HOH . T 5 HOH C 18 511 511 HOH HOH . T 5 HOH C 19 512 512 HOH HOH . T 5 HOH C 20 513 513 HOH HOH . T 5 HOH C 21 514 514 HOH HOH . T 5 HOH C 22 515 515 HOH HOH . T 5 HOH C 23 516 516 HOH HOH . T 5 HOH C 24 517 517 HOH HOH . T 5 HOH C 25 518 518 HOH HOH . T 5 HOH C 26 519 519 HOH HOH . T 5 HOH C 27 520 520 HOH HOH . T 5 HOH C 28 521 521 HOH HOH . T 5 HOH C 29 522 522 HOH HOH . T 5 HOH C 30 523 523 HOH HOH . T 5 HOH C 31 524 524 HOH HOH . T 5 HOH C 32 525 525 HOH HOH . T 5 HOH C 33 526 526 HOH HOH . T 5 HOH C 34 527 527 HOH HOH . T 5 HOH C 35 528 528 HOH HOH . T 5 HOH C 36 529 529 HOH HOH . T 5 HOH C 37 530 530 HOH HOH . T 5 HOH C 38 531 531 HOH HOH . T 5 HOH C 39 532 532 HOH HOH . T 5 HOH C 40 533 533 HOH HOH . T 5 HOH C 41 534 534 HOH HOH . T 5 HOH C 42 535 535 HOH HOH . T 5 HOH C 43 536 536 HOH HOH . T 5 HOH C 44 537 537 HOH HOH . T 5 HOH C 45 538 538 HOH HOH . T 5 HOH C 46 539 539 HOH HOH . T 5 HOH C 47 540 540 HOH HOH . T 5 HOH C 48 541 541 HOH HOH . T 5 HOH C 49 542 542 HOH HOH . T 5 HOH C 50 543 543 HOH HOH . T 5 HOH C 51 544 544 HOH HOH . T 5 HOH C 52 545 545 HOH HOH . T 5 HOH C 53 546 546 HOH HOH . T 5 HOH C 54 547 547 HOH HOH . T 5 HOH C 55 548 548 HOH HOH . T 5 HOH C 56 549 549 HOH HOH . T 5 HOH C 57 550 550 HOH HOH . T 5 HOH C 58 551 551 HOH HOH . T 5 HOH C 59 552 552 HOH HOH . T 5 HOH C 60 553 553 HOH HOH . T 5 HOH C 61 554 554 HOH HOH . T 5 HOH C 62 555 555 HOH HOH . T 5 HOH C 63 556 556 HOH HOH . U 5 HOH D 1 3 3 HOH HOH . U 5 HOH D 2 7 7 HOH HOH . U 5 HOH D 3 12 12 HOH HOH . U 5 HOH D 4 502 502 HOH HOH . U 5 HOH D 5 504 504 HOH HOH . U 5 HOH D 6 505 505 HOH HOH . U 5 HOH D 7 506 506 HOH HOH . U 5 HOH D 8 507 507 HOH HOH . U 5 HOH D 9 508 508 HOH HOH . U 5 HOH D 10 509 509 HOH HOH . U 5 HOH D 11 510 510 HOH HOH . U 5 HOH D 12 511 511 HOH HOH . U 5 HOH D 13 512 512 HOH HOH . U 5 HOH D 14 513 513 HOH HOH . U 5 HOH D 15 514 514 HOH HOH . U 5 HOH D 16 515 515 HOH HOH . U 5 HOH D 17 516 516 HOH HOH . U 5 HOH D 18 517 517 HOH HOH . U 5 HOH D 19 518 518 HOH HOH . U 5 HOH D 20 519 519 HOH HOH . U 5 HOH D 21 520 520 HOH HOH . U 5 HOH D 22 521 521 HOH HOH . U 5 HOH D 23 522 522 HOH HOH . U 5 HOH D 24 523 523 HOH HOH . U 5 HOH D 25 524 524 HOH HOH . U 5 HOH D 26 525 525 HOH HOH . U 5 HOH D 27 526 526 HOH HOH . U 5 HOH D 28 527 527 HOH HOH . U 5 HOH D 29 528 528 HOH HOH . U 5 HOH D 30 529 529 HOH HOH . U 5 HOH D 31 530 530 HOH HOH . U 5 HOH D 32 531 531 HOH HOH . U 5 HOH D 33 532 532 HOH HOH . U 5 HOH D 34 533 533 HOH HOH . U 5 HOH D 35 534 534 HOH HOH . U 5 HOH D 36 535 535 HOH HOH . U 5 HOH D 37 536 536 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id N _atom_site.label_entity_id 4 _atom_site.Cartn_x 28.108 _atom_site.Cartn_y 47.474 _atom_site.Cartn_z 55.203 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.65 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 600 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #