data_3TDG # _model_server_result.job_id -YwqhUvOtCU6XzGDvYp6Kg _model_server_result.datetime_utc '2024-11-05 00:35:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tdg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":302}' # _entry.id 3TDG # _exptl.entry_id 3TDG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3TDG _cell.length_a 86.767 _cell.length_b 86.767 _cell.length_c 85.508 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TDG _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 57.005333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 133 n n C1 C2 GOL sing 134 n n C1 H11 GOL sing 135 n n C1 H12 GOL sing 136 n n O1 HO1 GOL sing 137 n n C2 O2 GOL sing 138 n n C2 C3 GOL sing 139 n n C2 H2 GOL sing 140 n n O2 HO2 GOL sing 141 n n C3 O3 GOL sing 142 n n C3 H31 GOL sing 143 n n C3 H32 GOL sing 144 n n O3 HO3 GOL sing 145 n n # _atom_sites.entry_id 3TDG _atom_sites.fract_transf_matrix[1][1] 0.011525 _atom_sites.fract_transf_matrix[1][2] 0.006654 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013308 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011695 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 302 302 GOL GOL . C 3 FMT A 1 360 360 FMT FMT . D 4 P6G A 1 401 401 P6G P6G . E 5 HOH A 1 274 1 HOH HOH . E 5 HOH A 2 275 2 HOH HOH . E 5 HOH A 3 276 3 HOH HOH . E 5 HOH A 4 277 4 HOH HOH . E 5 HOH A 5 278 5 HOH HOH . E 5 HOH A 6 279 6 HOH HOH . E 5 HOH A 7 280 7 HOH HOH . E 5 HOH A 8 281 8 HOH HOH . E 5 HOH A 9 282 9 HOH HOH . E 5 HOH A 10 283 10 HOH HOH . E 5 HOH A 11 284 11 HOH HOH . E 5 HOH A 12 285 12 HOH HOH . E 5 HOH A 13 286 13 HOH HOH . E 5 HOH A 14 287 14 HOH HOH . E 5 HOH A 15 288 15 HOH HOH . E 5 HOH A 16 289 16 HOH HOH . E 5 HOH A 17 290 17 HOH HOH . E 5 HOH A 18 291 18 HOH HOH . E 5 HOH A 19 292 19 HOH HOH . E 5 HOH A 20 293 20 HOH HOH . E 5 HOH A 21 294 21 HOH HOH . E 5 HOH A 22 295 22 HOH HOH . E 5 HOH A 23 296 23 HOH HOH . E 5 HOH A 24 297 24 HOH HOH . E 5 HOH A 25 298 25 HOH HOH . E 5 HOH A 26 299 26 HOH HOH . E 5 HOH A 27 300 27 HOH HOH . E 5 HOH A 28 301 28 HOH HOH . E 5 HOH A 29 303 29 HOH HOH . E 5 HOH A 30 304 30 HOH HOH . E 5 HOH A 31 305 31 HOH HOH . E 5 HOH A 32 306 32 HOH HOH . E 5 HOH A 33 307 33 HOH HOH . E 5 HOH A 34 308 34 HOH HOH . E 5 HOH A 35 309 35 HOH HOH . E 5 HOH A 36 310 36 HOH HOH . E 5 HOH A 37 311 37 HOH HOH . E 5 HOH A 38 312 38 HOH HOH . E 5 HOH A 39 313 39 HOH HOH . E 5 HOH A 40 314 40 HOH HOH . E 5 HOH A 41 315 41 HOH HOH . E 5 HOH A 42 316 42 HOH HOH . E 5 HOH A 43 317 43 HOH HOH . E 5 HOH A 44 318 44 HOH HOH . E 5 HOH A 45 319 45 HOH HOH . E 5 HOH A 46 320 46 HOH HOH . E 5 HOH A 47 321 47 HOH HOH . E 5 HOH A 48 322 48 HOH HOH . E 5 HOH A 49 323 49 HOH HOH . E 5 HOH A 50 324 50 HOH HOH . E 5 HOH A 51 325 51 HOH HOH . E 5 HOH A 52 326 52 HOH HOH . E 5 HOH A 53 327 53 HOH HOH . E 5 HOH A 54 328 54 HOH HOH . E 5 HOH A 55 329 55 HOH HOH . E 5 HOH A 56 330 56 HOH HOH . E 5 HOH A 57 331 57 HOH HOH . E 5 HOH A 58 332 58 HOH HOH . E 5 HOH A 59 333 59 HOH HOH . E 5 HOH A 60 334 60 HOH HOH . E 5 HOH A 61 335 61 HOH HOH . E 5 HOH A 62 336 62 HOH HOH . E 5 HOH A 63 337 63 HOH HOH . E 5 HOH A 64 338 64 HOH HOH . E 5 HOH A 65 339 65 HOH HOH . E 5 HOH A 66 340 66 HOH HOH . E 5 HOH A 67 341 67 HOH HOH . E 5 HOH A 68 342 68 HOH HOH . E 5 HOH A 69 343 69 HOH HOH . E 5 HOH A 70 344 70 HOH HOH . E 5 HOH A 71 345 71 HOH HOH . E 5 HOH A 72 346 72 HOH HOH . E 5 HOH A 73 347 73 HOH HOH . E 5 HOH A 74 348 74 HOH HOH . E 5 HOH A 75 349 76 HOH HOH . E 5 HOH A 76 350 77 HOH HOH . E 5 HOH A 77 351 78 HOH HOH . E 5 HOH A 78 352 79 HOH HOH . E 5 HOH A 79 353 80 HOH HOH . E 5 HOH A 80 354 81 HOH HOH . E 5 HOH A 81 355 82 HOH HOH . E 5 HOH A 82 356 83 HOH HOH . E 5 HOH A 83 357 84 HOH HOH . E 5 HOH A 84 358 85 HOH HOH . E 5 HOH A 85 359 86 HOH HOH . E 5 HOH A 86 361 88 HOH HOH . E 5 HOH A 87 362 89 HOH HOH . E 5 HOH A 88 363 90 HOH HOH . E 5 HOH A 89 364 91 HOH HOH . E 5 HOH A 90 365 92 HOH HOH . E 5 HOH A 91 366 93 HOH HOH . E 5 HOH A 92 367 94 HOH HOH . E 5 HOH A 93 368 95 HOH HOH . E 5 HOH A 94 369 96 HOH HOH . E 5 HOH A 95 370 97 HOH HOH . E 5 HOH A 96 371 98 HOH HOH . E 5 HOH A 97 372 99 HOH HOH . E 5 HOH A 98 373 100 HOH HOH . E 5 HOH A 99 374 101 HOH HOH . E 5 HOH A 100 375 102 HOH HOH . E 5 HOH A 101 376 103 HOH HOH . E 5 HOH A 102 377 104 HOH HOH . E 5 HOH A 103 378 105 HOH HOH . E 5 HOH A 104 379 106 HOH HOH . E 5 HOH A 105 380 107 HOH HOH . E 5 HOH A 106 381 108 HOH HOH . E 5 HOH A 107 382 109 HOH HOH . E 5 HOH A 108 383 110 HOH HOH . E 5 HOH A 109 384 111 HOH HOH . E 5 HOH A 110 385 112 HOH HOH . E 5 HOH A 111 386 113 HOH HOH . E 5 HOH A 112 387 114 HOH HOH . E 5 HOH A 113 388 115 HOH HOH . E 5 HOH A 114 389 116 HOH HOH . E 5 HOH A 115 390 117 HOH HOH . E 5 HOH A 116 391 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -16.367 42.859 28.492 1 70.58 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . B 2 -17.405 43.816 28.58 1 71.57 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . B 2 -15.043 43.593 28.656 1 69.04 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . B 2 -15.149 44.455 29.769 1 69.81 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . B 2 -13.884 42.611 28.809 1 67.67 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . B 2 -13.102 42.598 27.632 1 64.79 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #