data_3TDM # _model_server_result.job_id jivyeG5yxXMTU2jFDQcdFg _model_server_result.datetime_utc '2024-12-12 18:44:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tdm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":122}' # _entry.id 3TDM # _exptl.entry_id 3TDM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TDM _cell.length_a 60.493 _cell.length_b 60.493 _cell.length_c 140.2 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TDM _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,G,K 2 1 D,H,L 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_654 -y+1,x,z-1/4 0 -1 0 1 0 0 0 0 1 60.493 0 -35.05 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 247 n n P O2 PO4 sing 248 n n P O3 PO4 sing 249 n n P O4 PO4 sing 250 n n # _atom_sites.entry_id 3TDM _atom_sites.fract_transf_matrix[1][1] 0.016531 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016531 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007133 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PO4 A 1 122 122 PO4 PO4 . F 2 PO4 B 1 122 122 PO4 PO4 . G 2 PO4 C 1 122 122 PO4 PO4 . H 2 PO4 D 1 122 122 PO4 PO4 . I 3 HOH A 1 123 123 HOH HOH . I 3 HOH A 2 124 124 HOH HOH . I 3 HOH A 3 125 125 HOH HOH . I 3 HOH A 4 126 126 HOH HOH . I 3 HOH A 5 127 127 HOH HOH . I 3 HOH A 6 128 128 HOH HOH . I 3 HOH A 7 129 129 HOH HOH . I 3 HOH A 8 130 130 HOH HOH . I 3 HOH A 9 131 131 HOH HOH . I 3 HOH A 10 132 132 HOH HOH . I 3 HOH A 11 133 133 HOH HOH . I 3 HOH A 12 134 134 HOH HOH . I 3 HOH A 13 135 135 HOH HOH . I 3 HOH A 14 136 136 HOH HOH . I 3 HOH A 15 137 137 HOH HOH . I 3 HOH A 16 138 138 HOH HOH . I 3 HOH A 17 139 139 HOH HOH . I 3 HOH A 18 140 140 HOH HOH . I 3 HOH A 19 141 141 HOH HOH . I 3 HOH A 20 142 142 HOH HOH . I 3 HOH A 21 143 143 HOH HOH . I 3 HOH A 22 144 144 HOH HOH . I 3 HOH A 23 145 145 HOH HOH . I 3 HOH A 24 146 146 HOH HOH . I 3 HOH A 25 147 147 HOH HOH . I 3 HOH A 26 148 148 HOH HOH . I 3 HOH A 27 149 149 HOH HOH . J 3 HOH B 1 123 123 HOH HOH . J 3 HOH B 2 124 124 HOH HOH . J 3 HOH B 3 125 125 HOH HOH . J 3 HOH B 4 126 126 HOH HOH . J 3 HOH B 5 127 127 HOH HOH . J 3 HOH B 6 128 128 HOH HOH . J 3 HOH B 7 129 129 HOH HOH . J 3 HOH B 8 130 130 HOH HOH . J 3 HOH B 9 131 131 HOH HOH . J 3 HOH B 10 132 132 HOH HOH . J 3 HOH B 11 133 133 HOH HOH . J 3 HOH B 12 134 134 HOH HOH . J 3 HOH B 13 135 135 HOH HOH . J 3 HOH B 14 136 136 HOH HOH . J 3 HOH B 15 137 137 HOH HOH . J 3 HOH B 16 138 138 HOH HOH . J 3 HOH B 17 139 139 HOH HOH . J 3 HOH B 18 140 140 HOH HOH . J 3 HOH B 19 141 141 HOH HOH . J 3 HOH B 20 142 142 HOH HOH . J 3 HOH B 21 143 143 HOH HOH . J 3 HOH B 22 144 144 HOH HOH . J 3 HOH B 23 145 145 HOH HOH . K 3 HOH C 1 123 123 HOH HOH . K 3 HOH C 2 124 124 HOH HOH . K 3 HOH C 3 125 125 HOH HOH . K 3 HOH C 4 126 126 HOH HOH . K 3 HOH C 5 127 127 HOH HOH . K 3 HOH C 6 128 128 HOH HOH . K 3 HOH C 7 129 129 HOH HOH . L 3 HOH D 1 123 123 HOH HOH . L 3 HOH D 2 124 124 HOH HOH . L 3 HOH D 3 125 125 HOH HOH . L 3 HOH D 4 126 126 HOH HOH . L 3 HOH D 5 127 127 HOH HOH . L 3 HOH D 6 128 128 HOH HOH . L 3 HOH D 7 129 129 HOH HOH . L 3 HOH D 8 130 130 HOH HOH . L 3 HOH D 9 131 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . H 2 25.233 36.409 12.205 1 56.41 ? P PO4 122 D 1 HETATM 2 O O1 PO4 . . . H 2 26.739 36.728 12.058 1 57.84 ? O1 PO4 122 D 1 HETATM 3 O O2 PO4 . . . H 2 24.702 36.109 10.796 1 55.32 ? O2 PO4 122 D 1 HETATM 4 O O3 PO4 . . . H 2 25 35.2 13.135 1 53.1 ? O3 PO4 122 D 1 HETATM 5 O O4 PO4 . . . H 2 24.433 37.591 12.766 1 55.52 ? O4 PO4 122 D 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 5 #