data_3TF8
#
_model_server_result.job_id            ddyRaGF8jK3eIQypdPhq0A 
_model_server_result.datetime_utc      '2024-11-30 06:08:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3tf8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":190}' 
#
_entry.id    3TF8 
#
_exptl.entry_id    3TF8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3TF8 
_cell.length_a            123.696 
_cell.length_b            123.696 
_cell.length_c            123.696 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3TF8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        198 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 105 A HIS 105 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc2 A O ALA 119 A ALA 119 1_555 D NA NA . A NA 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.109 ? 
metalc ? metalc3 A OE1 GLN 135 A GLN 135 1_555 D NA NA . A NA 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? 
metalc ? metalc4 D NA NA . A NA 190 1_555 F O HOH . A HOH 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.047 ? 
metalc ? metalc5 B NE2 HIS 105 B HIS 105 1_555 E FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3TF8 
_atom_sites.fract_transf_matrix[1][1]    0.008084 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008084 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008084 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 500 500 HEM HEM . 
D 3 NA A 1 190 1 NA NA . 
E 2 HEM B 1 501 501 HEM HEM . 
F 4 HOH A 1 191 191 HOH HOH . 
F 4 HOH A 2 192 6 HOH HOH . 
F 4 HOH A 3 193 7 HOH HOH . 
F 4 HOH A 4 194 194 HOH HOH . 
F 4 HOH A 5 195 9 HOH HOH . 
F 4 HOH A 6 196 196 HOH HOH . 
F 4 HOH A 7 197 197 HOH HOH . 
F 4 HOH A 8 198 198 HOH HOH . 
F 4 HOH A 9 199 199 HOH HOH . 
F 4 HOH A 10 200 200 HOH HOH . 
F 4 HOH A 11 201 201 HOH HOH . 
F 4 HOH A 12 202 11 HOH HOH . 
F 4 HOH A 13 203 203 HOH HOH . 
F 4 HOH A 14 204 12 HOH HOH . 
F 4 HOH A 15 205 13 HOH HOH . 
F 4 HOH A 16 206 206 HOH HOH . 
F 4 HOH A 17 207 207 HOH HOH . 
F 4 HOH A 18 208 15 HOH HOH . 
F 4 HOH A 19 209 18 HOH HOH . 
F 4 HOH A 20 210 19 HOH HOH . 
F 4 HOH A 21 211 20 HOH HOH . 
F 4 HOH A 22 212 26 HOH HOH . 
F 4 HOH A 23 213 28 HOH HOH . 
F 4 HOH A 24 214 29 HOH HOH . 
F 4 HOH A 25 215 30 HOH HOH . 
F 4 HOH A 26 216 31 HOH HOH . 
F 4 HOH A 27 217 34 HOH HOH . 
F 4 HOH A 28 218 36 HOH HOH . 
F 4 HOH A 29 219 37 HOH HOH . 
F 4 HOH A 30 220 42 HOH HOH . 
F 4 HOH A 31 221 47 HOH HOH . 
F 4 HOH A 32 222 49 HOH HOH . 
F 4 HOH A 33 223 51 HOH HOH . 
F 4 HOH A 34 224 53 HOH HOH . 
F 4 HOH A 35 225 54 HOH HOH . 
F 4 HOH A 36 226 55 HOH HOH . 
F 4 HOH A 37 227 57 HOH HOH . 
F 4 HOH A 38 228 59 HOH HOH . 
F 4 HOH A 39 229 60 HOH HOH . 
F 4 HOH A 40 230 61 HOH HOH . 
F 4 HOH A 41 231 66 HOH HOH . 
F 4 HOH A 42 232 69 HOH HOH . 
F 4 HOH A 43 233 70 HOH HOH . 
F 4 HOH A 44 234 72 HOH HOH . 
F 4 HOH A 45 235 73 HOH HOH . 
F 4 HOH A 46 236 75 HOH HOH . 
F 4 HOH A 47 237 76 HOH HOH . 
F 4 HOH A 48 238 77 HOH HOH . 
F 4 HOH A 49 239 84 HOH HOH . 
F 4 HOH A 50 240 85 HOH HOH . 
F 4 HOH A 51 241 87 HOH HOH . 
F 4 HOH A 52 242 88 HOH HOH . 
F 4 HOH A 53 243 91 HOH HOH . 
F 4 HOH A 54 244 92 HOH HOH . 
F 4 HOH A 55 245 95 HOH HOH . 
F 4 HOH A 56 246 99 HOH HOH . 
F 4 HOH A 57 247 102 HOH HOH . 
F 4 HOH A 58 248 104 HOH HOH . 
F 4 HOH A 59 249 105 HOH HOH . 
F 4 HOH A 60 250 107 HOH HOH . 
F 4 HOH A 61 251 108 HOH HOH . 
F 4 HOH A 62 252 111 HOH HOH . 
F 4 HOH A 63 253 112 HOH HOH . 
F 4 HOH A 64 254 113 HOH HOH . 
F 4 HOH A 65 255 114 HOH HOH . 
F 4 HOH A 66 256 115 HOH HOH . 
F 4 HOH A 67 257 116 HOH HOH . 
F 4 HOH A 68 258 118 HOH HOH . 
F 4 HOH A 69 259 119 HOH HOH . 
F 4 HOH A 70 260 120 HOH HOH . 
F 4 HOH A 71 261 121 HOH HOH . 
F 4 HOH A 72 262 123 HOH HOH . 
F 4 HOH A 73 263 124 HOH HOH . 
F 4 HOH A 74 264 125 HOH HOH . 
F 4 HOH A 75 265 126 HOH HOH . 
F 4 HOH A 76 266 133 HOH HOH . 
F 4 HOH A 77 267 136 HOH HOH . 
F 4 HOH A 78 268 140 HOH HOH . 
F 4 HOH A 79 269 142 HOH HOH . 
F 4 HOH A 80 270 144 HOH HOH . 
F 4 HOH A 81 271 145 HOH HOH . 
F 4 HOH A 82 272 146 HOH HOH . 
F 4 HOH A 83 273 153 HOH HOH . 
F 4 HOH A 84 274 154 HOH HOH . 
F 4 HOH A 85 275 155 HOH HOH . 
F 4 HOH A 86 276 156 HOH HOH . 
F 4 HOH A 87 277 159 HOH HOH . 
F 4 HOH A 88 278 161 HOH HOH . 
F 4 HOH A 89 279 162 HOH HOH . 
F 4 HOH A 90 280 163 HOH HOH . 
F 4 HOH A 91 281 165 HOH HOH . 
F 4 HOH A 92 282 166 HOH HOH . 
F 4 HOH A 93 283 167 HOH HOH . 
F 4 HOH A 94 284 168 HOH HOH . 
F 4 HOH A 95 285 169 HOH HOH . 
F 4 HOH A 96 286 170 HOH HOH . 
F 4 HOH A 97 287 172 HOH HOH . 
F 4 HOH A 98 288 173 HOH HOH . 
F 4 HOH A 99 289 176 HOH HOH . 
F 4 HOH A 100 290 177 HOH HOH . 
F 4 HOH A 101 291 180 HOH HOH . 
F 4 HOH A 102 292 181 HOH HOH . 
F 4 HOH A 103 293 183 HOH HOH . 
F 4 HOH A 104 294 186 HOH HOH . 
F 4 HOH A 105 295 187 HOH HOH . 
F 4 HOH A 106 296 188 HOH HOH . 
F 4 HOH A 107 297 3 HOH HOH . 
F 4 HOH A 108 298 5 HOH HOH . 
G 4 HOH B 1 190 190 HOH HOH . 
G 4 HOH B 2 191 8 HOH HOH . 
G 4 HOH B 3 192 192 HOH HOH . 
G 4 HOH B 4 193 193 HOH HOH . 
G 4 HOH B 5 194 10 HOH HOH . 
G 4 HOH B 6 195 195 HOH HOH . 
G 4 HOH B 7 196 14 HOH HOH . 
G 4 HOH B 8 197 16 HOH HOH . 
G 4 HOH B 9 198 17 HOH HOH . 
G 4 HOH B 10 199 21 HOH HOH . 
G 4 HOH B 11 200 22 HOH HOH . 
G 4 HOH B 12 201 23 HOH HOH . 
G 4 HOH B 13 202 202 HOH HOH . 
G 4 HOH B 14 203 24 HOH HOH . 
G 4 HOH B 15 204 204 HOH HOH . 
G 4 HOH B 16 205 205 HOH HOH . 
G 4 HOH B 17 206 25 HOH HOH . 
G 4 HOH B 18 207 27 HOH HOH . 
G 4 HOH B 19 208 32 HOH HOH . 
G 4 HOH B 20 209 33 HOH HOH . 
G 4 HOH B 21 210 35 HOH HOH . 
G 4 HOH B 22 211 38 HOH HOH . 
G 4 HOH B 23 212 39 HOH HOH . 
G 4 HOH B 24 213 40 HOH HOH . 
G 4 HOH B 25 214 41 HOH HOH . 
G 4 HOH B 26 215 43 HOH HOH . 
G 4 HOH B 27 216 44 HOH HOH . 
G 4 HOH B 28 217 45 HOH HOH . 
G 4 HOH B 29 218 46 HOH HOH . 
G 4 HOH B 30 219 48 HOH HOH . 
G 4 HOH B 31 220 50 HOH HOH . 
G 4 HOH B 32 221 52 HOH HOH . 
G 4 HOH B 33 222 56 HOH HOH . 
G 4 HOH B 34 223 58 HOH HOH . 
G 4 HOH B 35 224 62 HOH HOH . 
G 4 HOH B 36 225 63 HOH HOH . 
G 4 HOH B 37 226 64 HOH HOH . 
G 4 HOH B 38 227 65 HOH HOH . 
G 4 HOH B 39 228 67 HOH HOH . 
G 4 HOH B 40 229 68 HOH HOH . 
G 4 HOH B 41 230 71 HOH HOH . 
G 4 HOH B 42 231 74 HOH HOH . 
G 4 HOH B 43 232 78 HOH HOH . 
G 4 HOH B 44 233 79 HOH HOH . 
G 4 HOH B 45 234 80 HOH HOH . 
G 4 HOH B 46 235 81 HOH HOH . 
G 4 HOH B 47 236 82 HOH HOH . 
G 4 HOH B 48 237 83 HOH HOH . 
G 4 HOH B 49 238 86 HOH HOH . 
G 4 HOH B 50 239 89 HOH HOH . 
G 4 HOH B 51 240 90 HOH HOH . 
G 4 HOH B 52 241 93 HOH HOH . 
G 4 HOH B 53 242 94 HOH HOH . 
G 4 HOH B 54 243 96 HOH HOH . 
G 4 HOH B 55 244 97 HOH HOH . 
G 4 HOH B 56 245 98 HOH HOH . 
G 4 HOH B 57 246 100 HOH HOH . 
G 4 HOH B 58 247 101 HOH HOH . 
G 4 HOH B 59 248 103 HOH HOH . 
G 4 HOH B 60 249 106 HOH HOH . 
G 4 HOH B 61 250 109 HOH HOH . 
G 4 HOH B 62 251 110 HOH HOH . 
G 4 HOH B 63 252 117 HOH HOH . 
G 4 HOH B 64 253 122 HOH HOH . 
G 4 HOH B 65 254 127 HOH HOH . 
G 4 HOH B 66 255 128 HOH HOH . 
G 4 HOH B 67 256 129 HOH HOH . 
G 4 HOH B 68 257 130 HOH HOH . 
G 4 HOH B 69 258 131 HOH HOH . 
G 4 HOH B 70 259 132 HOH HOH . 
G 4 HOH B 71 260 134 HOH HOH . 
G 4 HOH B 72 261 135 HOH HOH . 
G 4 HOH B 73 262 137 HOH HOH . 
G 4 HOH B 74 263 138 HOH HOH . 
G 4 HOH B 75 264 139 HOH HOH . 
G 4 HOH B 76 265 141 HOH HOH . 
G 4 HOH B 77 266 143 HOH HOH . 
G 4 HOH B 78 267 147 HOH HOH . 
G 4 HOH B 79 268 148 HOH HOH . 
G 4 HOH B 80 269 149 HOH HOH . 
G 4 HOH B 81 270 150 HOH HOH . 
G 4 HOH B 82 271 151 HOH HOH . 
G 4 HOH B 83 272 152 HOH HOH . 
G 4 HOH B 84 273 157 HOH HOH . 
G 4 HOH B 85 274 158 HOH HOH . 
G 4 HOH B 86 275 160 HOH HOH . 
G 4 HOH B 87 276 164 HOH HOH . 
G 4 HOH B 88 277 171 HOH HOH . 
G 4 HOH B 89 278 174 HOH HOH . 
G 4 HOH B 90 279 175 HOH HOH . 
G 4 HOH B 91 280 178 HOH HOH . 
G 4 HOH B 92 281 179 HOH HOH . 
G 4 HOH B 93 282 182 HOH HOH . 
G 4 HOH B 94 283 184 HOH HOH . 
G 4 HOH B 95 284 185 HOH HOH . 
G 4 HOH B 96 285 1 HOH HOH . 
G 4 HOH B 97 286 2 HOH HOH . 
G 4 HOH B 98 287 4 HOH HOH . 
G 4 HOH B 99 288 189 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -1.423 
_atom_site.Cartn_y               31.354 
_atom_site.Cartn_z               66.828 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        50.79 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           190 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              76 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#