data_3TF9 # _model_server_result.job_id 3F8oyMeJaN24EZbuJCV8jA _model_server_result.datetime_utc '2024-11-08 09:10:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tf9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":191}' # _entry.id 3TF9 # _exptl.entry_id 3TF9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TF9 _cell.length_a 124.404 _cell.length_b 124.404 _cell.length_c 124.404 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TF9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 44 A SER 44 1_555 E NA NA . A NA 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc2 A OG1 THR 48 A THR 48 1_555 E NA NA . A NA 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc3 A NE2 HIS 105 A HIS 105 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc4 B OD1 ASN 6 B ASN 6 1_555 H NA NA . B NA 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? metalc ? metalc5 B O SER 44 B SER 44 1_555 H NA NA . B NA 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.969 ? metalc ? metalc6 B OG1 THR 48 B THR 48 1_555 H NA NA . B NA 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc7 B NE2 HIS 105 B HIS 105 1_555 F FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3TF9 _atom_sites.fract_transf_matrix[1][1] 0.008038 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008038 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008038 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 500 500 HEM HEM . D 3 XE A 1 190 1 XE XE . E 4 NA A 1 191 1 NA NA . F 2 HEM B 1 501 501 HEM HEM . G 3 XE B 1 190 2 XE XE . H 4 NA B 1 191 1 NA NA . I 5 HOH A 1 192 9 HOH HOH . I 5 HOH A 2 193 10 HOH HOH . I 5 HOH A 3 194 11 HOH HOH . I 5 HOH A 4 195 13 HOH HOH . I 5 HOH A 5 196 15 HOH HOH . I 5 HOH A 6 197 18 HOH HOH . I 5 HOH A 7 198 19 HOH HOH . I 5 HOH A 8 199 20 HOH HOH . I 5 HOH A 9 200 21 HOH HOH . I 5 HOH A 10 201 22 HOH HOH . I 5 HOH A 11 202 1 HOH HOH . I 5 HOH A 12 203 2 HOH HOH . I 5 HOH A 13 204 4 HOH HOH . I 5 HOH A 14 205 5 HOH HOH . I 5 HOH A 15 206 7 HOH HOH . J 5 HOH B 1 192 16 HOH HOH . J 5 HOH B 2 193 17 HOH HOH . J 5 HOH B 3 194 23 HOH HOH . J 5 HOH B 4 195 3 HOH HOH . J 5 HOH B 5 196 6 HOH HOH . J 5 HOH B 6 197 8 HOH HOH . J 5 HOH B 7 198 12 HOH HOH . J 5 HOH B 8 199 14 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 8.758 _atom_site.Cartn_y 19.397 _atom_site.Cartn_z 82.323 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 78.2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 191 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #