data_3TFE
#
_model_server_result.job_id            '_ThuYgKiWLd0wKpI7lvWZQ' 
_model_server_result.datetime_utc      '2024-11-08 08:47:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3tfe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":192}' 
#
_entry.id    3TFE 
#
_exptl.entry_id    3TFE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              104.061 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONIC ACID' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3TFE 
_cell.length_a            123.295 
_cell.length_b            123.295 
_cell.length_c            123.295 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3TFE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        198 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,L 1 1 
B,H,I,J,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 105 A HIS 105 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc2 B NE2 HIS 105 B HIS 105 1_555 H FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
#
_chem_comp.formula           'C3 H4 O4' 
_chem_comp.formula_weight    104.061 
_chem_comp.id                MLA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1A MLA sing 319 n n 
C1 O1B MLA doub 320 n n 
C1 C2 MLA sing 321 n n 
O1A H1A MLA sing 322 n n 
C2 C3 MLA sing 323 n n 
C2 HC21 MLA sing 324 n n 
C2 HC22 MLA sing 325 n n 
C3 O3A MLA doub 326 n n 
C3 O3B MLA sing 327 n n 
O3B H3B MLA sing 328 n n 
#
_atom_sites.entry_id                     3TFE 
_atom_sites.fract_transf_matrix[1][1]    0.008111 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008111 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008111 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 500 500 HEM HEM . 
D 3 XE A 1 190 1 XE XE . 
E 3 XE A 1 191 2 XE XE . 
F 4 MLA A 1 192 2 MLA MLA . 
G 4 MLA A 1 193 3 MLA MLA . 
H 2 HEM B 1 501 501 HEM HEM . 
I 3 XE B 1 190 3 XE XE . 
J 3 XE B 1 191 4 XE XE . 
K 4 MLA B 1 192 1 MLA MLA . 
L 5 HOH A 1 194 13 HOH HOH . 
L 5 HOH A 2 195 16 HOH HOH . 
L 5 HOH A 3 196 21 HOH HOH . 
L 5 HOH A 4 197 22 HOH HOH . 
L 5 HOH A 5 198 23 HOH HOH . 
L 5 HOH A 6 199 26 HOH HOH . 
L 5 HOH A 7 200 27 HOH HOH . 
L 5 HOH A 8 201 29 HOH HOH . 
L 5 HOH A 9 202 32 HOH HOH . 
L 5 HOH A 10 203 33 HOH HOH . 
L 5 HOH A 11 204 35 HOH HOH . 
L 5 HOH A 12 205 36 HOH HOH . 
L 5 HOH A 13 206 37 HOH HOH . 
L 5 HOH A 14 207 39 HOH HOH . 
L 5 HOH A 15 208 43 HOH HOH . 
L 5 HOH A 16 209 44 HOH HOH . 
L 5 HOH A 17 210 45 HOH HOH . 
L 5 HOH A 18 211 47 HOH HOH . 
L 5 HOH A 19 212 48 HOH HOH . 
L 5 HOH A 20 213 49 HOH HOH . 
L 5 HOH A 21 214 51 HOH HOH . 
L 5 HOH A 22 215 52 HOH HOH . 
L 5 HOH A 23 216 55 HOH HOH . 
L 5 HOH A 24 217 57 HOH HOH . 
L 5 HOH A 25 218 58 HOH HOH . 
L 5 HOH A 26 219 60 HOH HOH . 
L 5 HOH A 27 220 62 HOH HOH . 
L 5 HOH A 28 221 67 HOH HOH . 
L 5 HOH A 29 222 68 HOH HOH . 
L 5 HOH A 30 223 70 HOH HOH . 
L 5 HOH A 31 224 75 HOH HOH . 
L 5 HOH A 32 225 76 HOH HOH . 
L 5 HOH A 33 226 77 HOH HOH . 
L 5 HOH A 34 227 83 HOH HOH . 
L 5 HOH A 35 228 84 HOH HOH . 
L 5 HOH A 36 229 87 HOH HOH . 
L 5 HOH A 37 230 88 HOH HOH . 
L 5 HOH A 38 231 91 HOH HOH . 
L 5 HOH A 39 232 93 HOH HOH . 
L 5 HOH A 40 233 94 HOH HOH . 
L 5 HOH A 41 234 95 HOH HOH . 
L 5 HOH A 42 235 100 HOH HOH . 
L 5 HOH A 43 236 103 HOH HOH . 
L 5 HOH A 44 237 104 HOH HOH . 
L 5 HOH A 45 238 110 HOH HOH . 
L 5 HOH A 46 239 112 HOH HOH . 
L 5 HOH A 47 240 114 HOH HOH . 
L 5 HOH A 48 241 116 HOH HOH . 
L 5 HOH A 49 242 119 HOH HOH . 
L 5 HOH A 50 243 120 HOH HOH . 
L 5 HOH A 51 244 122 HOH HOH . 
L 5 HOH A 52 245 124 HOH HOH . 
L 5 HOH A 53 246 125 HOH HOH . 
L 5 HOH A 54 247 126 HOH HOH . 
L 5 HOH A 55 248 127 HOH HOH . 
L 5 HOH A 56 249 132 HOH HOH . 
L 5 HOH A 57 250 133 HOH HOH . 
L 5 HOH A 58 251 134 HOH HOH . 
L 5 HOH A 59 252 135 HOH HOH . 
L 5 HOH A 60 253 139 HOH HOH . 
L 5 HOH A 61 254 140 HOH HOH . 
L 5 HOH A 62 255 146 HOH HOH . 
L 5 HOH A 63 256 147 HOH HOH . 
L 5 HOH A 64 257 152 HOH HOH . 
L 5 HOH A 65 258 156 HOH HOH . 
L 5 HOH A 66 259 158 HOH HOH . 
L 5 HOH A 67 260 159 HOH HOH . 
L 5 HOH A 68 261 160 HOH HOH . 
L 5 HOH A 69 262 162 HOH HOH . 
L 5 HOH A 70 263 166 HOH HOH . 
L 5 HOH A 71 264 167 HOH HOH . 
L 5 HOH A 72 265 168 HOH HOH . 
L 5 HOH A 73 266 2 HOH HOH . 
L 5 HOH A 74 267 6 HOH HOH . 
L 5 HOH A 75 268 7 HOH HOH . 
L 5 HOH A 76 269 8 HOH HOH . 
L 5 HOH A 77 270 9 HOH HOH . 
L 5 HOH A 78 271 10 HOH HOH . 
M 5 HOH B 1 193 14 HOH HOH . 
M 5 HOH B 2 194 15 HOH HOH . 
M 5 HOH B 3 195 17 HOH HOH . 
M 5 HOH B 4 196 18 HOH HOH . 
M 5 HOH B 5 197 19 HOH HOH . 
M 5 HOH B 6 198 20 HOH HOH . 
M 5 HOH B 7 199 24 HOH HOH . 
M 5 HOH B 8 200 25 HOH HOH . 
M 5 HOH B 9 201 28 HOH HOH . 
M 5 HOH B 10 202 30 HOH HOH . 
M 5 HOH B 11 203 31 HOH HOH . 
M 5 HOH B 12 204 34 HOH HOH . 
M 5 HOH B 13 205 38 HOH HOH . 
M 5 HOH B 14 206 40 HOH HOH . 
M 5 HOH B 15 207 41 HOH HOH . 
M 5 HOH B 16 208 42 HOH HOH . 
M 5 HOH B 17 209 46 HOH HOH . 
M 5 HOH B 18 210 50 HOH HOH . 
M 5 HOH B 19 211 53 HOH HOH . 
M 5 HOH B 20 212 54 HOH HOH . 
M 5 HOH B 21 213 56 HOH HOH . 
M 5 HOH B 22 214 59 HOH HOH . 
M 5 HOH B 23 215 61 HOH HOH . 
M 5 HOH B 24 216 63 HOH HOH . 
M 5 HOH B 25 217 64 HOH HOH . 
M 5 HOH B 26 218 65 HOH HOH . 
M 5 HOH B 27 219 66 HOH HOH . 
M 5 HOH B 28 220 69 HOH HOH . 
M 5 HOH B 29 221 71 HOH HOH . 
M 5 HOH B 30 222 72 HOH HOH . 
M 5 HOH B 31 223 73 HOH HOH . 
M 5 HOH B 32 224 74 HOH HOH . 
M 5 HOH B 33 225 78 HOH HOH . 
M 5 HOH B 34 226 79 HOH HOH . 
M 5 HOH B 35 227 80 HOH HOH . 
M 5 HOH B 36 228 81 HOH HOH . 
M 5 HOH B 37 229 82 HOH HOH . 
M 5 HOH B 38 230 85 HOH HOH . 
M 5 HOH B 39 231 86 HOH HOH . 
M 5 HOH B 40 232 89 HOH HOH . 
M 5 HOH B 41 233 90 HOH HOH . 
M 5 HOH B 42 234 92 HOH HOH . 
M 5 HOH B 43 235 96 HOH HOH . 
M 5 HOH B 44 236 97 HOH HOH . 
M 5 HOH B 45 237 98 HOH HOH . 
M 5 HOH B 46 238 99 HOH HOH . 
M 5 HOH B 47 239 101 HOH HOH . 
M 5 HOH B 48 240 102 HOH HOH . 
M 5 HOH B 49 241 105 HOH HOH . 
M 5 HOH B 50 242 106 HOH HOH . 
M 5 HOH B 51 243 107 HOH HOH . 
M 5 HOH B 52 244 108 HOH HOH . 
M 5 HOH B 53 245 109 HOH HOH . 
M 5 HOH B 54 246 111 HOH HOH . 
M 5 HOH B 55 247 113 HOH HOH . 
M 5 HOH B 56 248 115 HOH HOH . 
M 5 HOH B 57 249 117 HOH HOH . 
M 5 HOH B 58 250 118 HOH HOH . 
M 5 HOH B 59 251 121 HOH HOH . 
M 5 HOH B 60 252 123 HOH HOH . 
M 5 HOH B 61 253 128 HOH HOH . 
M 5 HOH B 62 254 129 HOH HOH . 
M 5 HOH B 63 255 130 HOH HOH . 
M 5 HOH B 64 256 131 HOH HOH . 
M 5 HOH B 65 257 136 HOH HOH . 
M 5 HOH B 66 258 137 HOH HOH . 
M 5 HOH B 67 259 138 HOH HOH . 
M 5 HOH B 68 260 141 HOH HOH . 
M 5 HOH B 69 261 142 HOH HOH . 
M 5 HOH B 70 262 143 HOH HOH . 
M 5 HOH B 71 263 144 HOH HOH . 
M 5 HOH B 72 264 145 HOH HOH . 
M 5 HOH B 73 265 148 HOH HOH . 
M 5 HOH B 74 266 149 HOH HOH . 
M 5 HOH B 75 267 150 HOH HOH . 
M 5 HOH B 76 268 151 HOH HOH . 
M 5 HOH B 77 269 153 HOH HOH . 
M 5 HOH B 78 270 154 HOH HOH . 
M 5 HOH B 79 271 155 HOH HOH . 
M 5 HOH B 80 272 157 HOH HOH . 
M 5 HOH B 81 273 161 HOH HOH . 
M 5 HOH B 82 274 163 HOH HOH . 
M 5 HOH B 83 275 164 HOH HOH . 
M 5 HOH B 84 276 165 HOH HOH . 
M 5 HOH B 85 277 169 HOH HOH . 
M 5 HOH B 86 278 170 HOH HOH . 
M 5 HOH B 87 279 1 HOH HOH . 
M 5 HOH B 88 280 3 HOH HOH . 
M 5 HOH B 89 281 4 HOH HOH . 
M 5 HOH B 90 282 5 HOH HOH . 
M 5 HOH B 91 283 11 HOH HOH . 
M 5 HOH B 92 284 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLA . . . F 4 51.294 57.094 77.108 1 69.72 ? C1 MLA 192 A 1 
HETATM 2 O O1A MLA . . . F 4 52.248 56.51 77.681 1 78.15 ? O1A MLA 192 A 1 
HETATM 3 O O1B MLA . . . F 4 50.155 57.089 77.64 1 56.95 ? O1B MLA 192 A 1 
HETATM 4 C C2 MLA . . . F 4 51.515 57.792 75.808 1 78.85 ? C2 MLA 192 A 1 
HETATM 5 C C3 MLA . . . F 4 51.742 59.266 75.855 1 91.45 ? C3 MLA 192 A 1 
HETATM 6 O O3A MLA . . . F 4 50.941 60.008 76.484 1 92.17 ? O3A MLA 192 A 1 
HETATM 7 O O3B MLA . . . F 4 52.736 59.768 75.265 1 92.36 ? O3B MLA 192 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           7 
#