data_3TG4 # _model_server_result.job_id xie9HUZvbN9K8hnkFxw_BA _model_server_result.datetime_utc '2024-12-23 00:09:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tg4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":442}' # _entry.id 3TG4 # _exptl.entry_id 3TG4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TG4 _cell.length_a 52.48 _cell.length_b 67.48 _cell.length_c 141.97 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TG4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 52 A CYS 52 1_555 C ZN ZN . A ZN 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc2 A SG CYS 55 A CYS 55 1_555 C ZN ZN . A ZN 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc3 A SG CYS 65 A CYS 65 1_555 D ZN ZN . A ZN 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc4 A SG CYS 68 A CYS 68 1_555 D ZN ZN . A ZN 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc5 A SG CYS 74 A CYS 74 1_555 C ZN ZN . A ZN 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc6 A SG CYS 78 A CYS 78 1_555 C ZN ZN . A ZN 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc7 A NE2 HIS 86 A HIS 86 1_555 D ZN ZN . A ZN 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc8 A SG CYS 90 A CYS 90 1_555 D ZN ZN . A ZN 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc9 A SG CYS 209 A CYS 209 1_555 E ZN ZN . A ZN 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc10 A SG CYS 262 A CYS 262 1_555 E ZN ZN . A ZN 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc11 A SG CYS 264 A CYS 264 1_555 E ZN ZN . A ZN 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc12 A SG CYS 267 A CYS 267 1_555 E ZN ZN . A ZN 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3TG4 _atom_sites.fract_transf_matrix[1][1] 0.019055 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014819 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM A 1 434 1 SAM SAM . C 3 ZN A 1 435 1 ZN ZN . D 3 ZN A 1 436 2 ZN ZN . E 3 ZN A 1 437 3 ZN ZN . F 4 GOL A 1 438 1 GOL GOL . G 4 GOL A 1 439 2 GOL GOL . H 4 GOL A 1 440 3 GOL GOL . I 4 GOL A 1 441 4 GOL GOL . J 4 GOL A 1 442 5 GOL GOL . K 5 HOH A 1 443 1 HOH HOH . K 5 HOH A 2 444 2 HOH HOH . K 5 HOH A 3 445 3 HOH HOH . K 5 HOH A 4 446 4 HOH HOH . K 5 HOH A 5 447 5 HOH HOH . K 5 HOH A 6 448 6 HOH HOH . K 5 HOH A 7 449 7 HOH HOH . K 5 HOH A 8 450 8 HOH HOH . K 5 HOH A 9 451 9 HOH HOH . K 5 HOH A 10 452 10 HOH HOH . K 5 HOH A 11 453 11 HOH HOH . K 5 HOH A 12 454 12 HOH HOH . K 5 HOH A 13 455 13 HOH HOH . K 5 HOH A 14 456 14 HOH HOH . K 5 HOH A 15 457 15 HOH HOH . K 5 HOH A 16 458 16 HOH HOH . K 5 HOH A 17 459 17 HOH HOH . K 5 HOH A 18 460 18 HOH HOH . K 5 HOH A 19 461 19 HOH HOH . K 5 HOH A 20 462 20 HOH HOH . K 5 HOH A 21 463 21 HOH HOH . K 5 HOH A 22 464 22 HOH HOH . K 5 HOH A 23 465 23 HOH HOH . K 5 HOH A 24 466 24 HOH HOH . K 5 HOH A 25 467 25 HOH HOH . K 5 HOH A 26 468 26 HOH HOH . K 5 HOH A 27 469 27 HOH HOH . K 5 HOH A 28 470 28 HOH HOH . K 5 HOH A 29 471 29 HOH HOH . K 5 HOH A 30 472 30 HOH HOH . K 5 HOH A 31 473 31 HOH HOH . K 5 HOH A 32 474 32 HOH HOH . K 5 HOH A 33 475 33 HOH HOH . K 5 HOH A 34 476 34 HOH HOH . K 5 HOH A 35 477 35 HOH HOH . K 5 HOH A 36 478 36 HOH HOH . K 5 HOH A 37 479 37 HOH HOH . K 5 HOH A 38 480 38 HOH HOH . K 5 HOH A 39 481 39 HOH HOH . K 5 HOH A 40 482 40 HOH HOH . K 5 HOH A 41 483 41 HOH HOH . K 5 HOH A 42 484 42 HOH HOH . K 5 HOH A 43 485 43 HOH HOH . K 5 HOH A 44 486 44 HOH HOH . K 5 HOH A 45 487 45 HOH HOH . K 5 HOH A 46 488 46 HOH HOH . K 5 HOH A 47 489 47 HOH HOH . K 5 HOH A 48 490 48 HOH HOH . K 5 HOH A 49 491 49 HOH HOH . K 5 HOH A 50 492 50 HOH HOH . K 5 HOH A 51 493 51 HOH HOH . K 5 HOH A 52 494 52 HOH HOH . K 5 HOH A 53 495 53 HOH HOH . K 5 HOH A 54 496 54 HOH HOH . K 5 HOH A 55 497 55 HOH HOH . K 5 HOH A 56 498 56 HOH HOH . K 5 HOH A 57 499 57 HOH HOH . K 5 HOH A 58 500 58 HOH HOH . K 5 HOH A 59 501 59 HOH HOH . K 5 HOH A 60 502 60 HOH HOH . K 5 HOH A 61 503 61 HOH HOH . K 5 HOH A 62 504 62 HOH HOH . K 5 HOH A 63 505 63 HOH HOH . K 5 HOH A 64 506 64 HOH HOH . K 5 HOH A 65 507 65 HOH HOH . K 5 HOH A 66 508 66 HOH HOH . K 5 HOH A 67 509 67 HOH HOH . K 5 HOH A 68 510 68 HOH HOH . K 5 HOH A 69 511 69 HOH HOH . K 5 HOH A 70 512 70 HOH HOH . K 5 HOH A 71 513 71 HOH HOH . K 5 HOH A 72 514 72 HOH HOH . K 5 HOH A 73 515 73 HOH HOH . K 5 HOH A 74 516 74 HOH HOH . K 5 HOH A 75 517 75 HOH HOH . K 5 HOH A 76 518 76 HOH HOH . K 5 HOH A 77 519 77 HOH HOH . K 5 HOH A 78 520 78 HOH HOH . K 5 HOH A 79 521 79 HOH HOH . K 5 HOH A 80 522 80 HOH HOH . K 5 HOH A 81 523 81 HOH HOH . K 5 HOH A 82 524 82 HOH HOH . K 5 HOH A 83 525 83 HOH HOH . K 5 HOH A 84 526 84 HOH HOH . K 5 HOH A 85 527 85 HOH HOH . K 5 HOH A 86 528 86 HOH HOH . K 5 HOH A 87 529 87 HOH HOH . K 5 HOH A 88 530 88 HOH HOH . K 5 HOH A 89 531 89 HOH HOH . K 5 HOH A 90 532 90 HOH HOH . K 5 HOH A 91 533 91 HOH HOH . K 5 HOH A 92 534 92 HOH HOH . K 5 HOH A 93 535 93 HOH HOH . K 5 HOH A 94 536 94 HOH HOH . K 5 HOH A 95 537 95 HOH HOH . K 5 HOH A 96 538 96 HOH HOH . K 5 HOH A 97 539 97 HOH HOH . K 5 HOH A 98 540 98 HOH HOH . K 5 HOH A 99 541 99 HOH HOH . K 5 HOH A 100 542 100 HOH HOH . K 5 HOH A 101 543 101 HOH HOH . K 5 HOH A 102 544 102 HOH HOH . K 5 HOH A 103 545 103 HOH HOH . K 5 HOH A 104 546 104 HOH HOH . K 5 HOH A 105 547 105 HOH HOH . K 5 HOH A 106 548 106 HOH HOH . K 5 HOH A 107 549 107 HOH HOH . K 5 HOH A 108 550 108 HOH HOH . K 5 HOH A 109 551 109 HOH HOH . K 5 HOH A 110 552 110 HOH HOH . K 5 HOH A 111 553 111 HOH HOH . K 5 HOH A 112 554 112 HOH HOH . K 5 HOH A 113 555 113 HOH HOH . K 5 HOH A 114 556 114 HOH HOH . K 5 HOH A 115 557 115 HOH HOH . K 5 HOH A 116 558 116 HOH HOH . K 5 HOH A 117 559 117 HOH HOH . K 5 HOH A 118 560 118 HOH HOH . K 5 HOH A 119 561 119 HOH HOH . K 5 HOH A 120 562 120 HOH HOH . K 5 HOH A 121 563 121 HOH HOH . K 5 HOH A 122 564 122 HOH HOH . K 5 HOH A 123 565 123 HOH HOH . K 5 HOH A 124 566 124 HOH HOH . K 5 HOH A 125 567 125 HOH HOH . K 5 HOH A 126 568 126 HOH HOH . K 5 HOH A 127 569 127 HOH HOH . K 5 HOH A 128 570 128 HOH HOH . K 5 HOH A 129 571 129 HOH HOH . K 5 HOH A 130 572 130 HOH HOH . K 5 HOH A 131 573 131 HOH HOH . K 5 HOH A 132 574 132 HOH HOH . K 5 HOH A 133 575 133 HOH HOH . K 5 HOH A 134 576 134 HOH HOH . K 5 HOH A 135 577 135 HOH HOH . K 5 HOH A 136 578 136 HOH HOH . K 5 HOH A 137 579 137 HOH HOH . K 5 HOH A 138 580 138 HOH HOH . K 5 HOH A 139 581 139 HOH HOH . K 5 HOH A 140 582 140 HOH HOH . K 5 HOH A 141 583 141 HOH HOH . K 5 HOH A 142 584 142 HOH HOH . K 5 HOH A 143 585 143 HOH HOH . K 5 HOH A 144 586 144 HOH HOH . K 5 HOH A 145 587 145 HOH HOH . K 5 HOH A 146 588 146 HOH HOH . K 5 HOH A 147 589 147 HOH HOH . K 5 HOH A 148 590 148 HOH HOH . K 5 HOH A 149 591 149 HOH HOH . K 5 HOH A 150 592 150 HOH HOH . K 5 HOH A 151 593 151 HOH HOH . K 5 HOH A 152 594 152 HOH HOH . K 5 HOH A 153 595 153 HOH HOH . K 5 HOH A 154 596 154 HOH HOH . K 5 HOH A 155 597 155 HOH HOH . K 5 HOH A 156 598 156 HOH HOH . K 5 HOH A 157 599 157 HOH HOH . K 5 HOH A 158 600 158 HOH HOH . K 5 HOH A 159 601 159 HOH HOH . K 5 HOH A 160 602 160 HOH HOH . K 5 HOH A 161 603 161 HOH HOH . K 5 HOH A 162 604 162 HOH HOH . K 5 HOH A 163 605 163 HOH HOH . K 5 HOH A 164 606 164 HOH HOH . K 5 HOH A 165 607 165 HOH HOH . K 5 HOH A 166 608 166 HOH HOH . K 5 HOH A 167 609 167 HOH HOH . K 5 HOH A 168 610 168 HOH HOH . K 5 HOH A 169 611 169 HOH HOH . K 5 HOH A 170 612 170 HOH HOH . K 5 HOH A 171 613 171 HOH HOH . K 5 HOH A 172 614 172 HOH HOH . K 5 HOH A 173 615 173 HOH HOH . K 5 HOH A 174 616 174 HOH HOH . K 5 HOH A 175 617 175 HOH HOH . K 5 HOH A 176 618 176 HOH HOH . K 5 HOH A 177 619 177 HOH HOH . K 5 HOH A 178 620 178 HOH HOH . K 5 HOH A 179 621 179 HOH HOH . K 5 HOH A 180 622 180 HOH HOH . K 5 HOH A 181 623 181 HOH HOH . K 5 HOH A 182 624 182 HOH HOH . K 5 HOH A 183 625 183 HOH HOH . K 5 HOH A 184 626 184 HOH HOH . K 5 HOH A 185 627 185 HOH HOH . K 5 HOH A 186 628 186 HOH HOH . K 5 HOH A 187 629 187 HOH HOH . K 5 HOH A 188 630 188 HOH HOH . K 5 HOH A 189 631 189 HOH HOH . K 5 HOH A 190 632 190 HOH HOH . K 5 HOH A 191 633 191 HOH HOH . K 5 HOH A 192 634 192 HOH HOH . K 5 HOH A 193 635 193 HOH HOH . K 5 HOH A 194 636 194 HOH HOH . K 5 HOH A 195 637 195 HOH HOH . K 5 HOH A 196 638 196 HOH HOH . K 5 HOH A 197 639 197 HOH HOH . K 5 HOH A 198 640 198 HOH HOH . K 5 HOH A 199 641 199 HOH HOH . K 5 HOH A 200 642 200 HOH HOH . K 5 HOH A 201 643 201 HOH HOH . K 5 HOH A 202 644 202 HOH HOH . K 5 HOH A 203 645 203 HOH HOH . K 5 HOH A 204 646 204 HOH HOH . K 5 HOH A 205 647 205 HOH HOH . K 5 HOH A 206 648 206 HOH HOH . K 5 HOH A 207 649 207 HOH HOH . K 5 HOH A 208 650 208 HOH HOH . K 5 HOH A 209 651 209 HOH HOH . K 5 HOH A 210 652 210 HOH HOH . K 5 HOH A 211 653 211 HOH HOH . K 5 HOH A 212 654 212 HOH HOH . K 5 HOH A 213 655 213 HOH HOH . K 5 HOH A 214 656 214 HOH HOH . K 5 HOH A 215 657 215 HOH HOH . K 5 HOH A 216 658 216 HOH HOH . K 5 HOH A 217 659 217 HOH HOH . K 5 HOH A 218 660 218 HOH HOH . K 5 HOH A 219 661 219 HOH HOH . K 5 HOH A 220 662 220 HOH HOH . K 5 HOH A 221 663 221 HOH HOH . K 5 HOH A 222 664 222 HOH HOH . K 5 HOH A 223 665 223 HOH HOH . K 5 HOH A 224 666 224 HOH HOH . K 5 HOH A 225 667 225 HOH HOH . K 5 HOH A 226 668 226 HOH HOH . K 5 HOH A 227 669 227 HOH HOH . K 5 HOH A 228 670 228 HOH HOH . K 5 HOH A 229 671 229 HOH HOH . K 5 HOH A 230 672 230 HOH HOH . K 5 HOH A 231 673 231 HOH HOH . K 5 HOH A 232 674 232 HOH HOH . K 5 HOH A 233 675 233 HOH HOH . K 5 HOH A 234 676 234 HOH HOH . K 5 HOH A 235 677 235 HOH HOH . K 5 HOH A 236 678 236 HOH HOH . K 5 HOH A 237 679 237 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 4 11.452 5.069 32.707 1 40.21 ? C1 GOL 442 A 1 HETATM 2 O O1 GOL . . . J 4 12.789 5.472 33 1 37.43 ? O1 GOL 442 A 1 HETATM 3 C C2 GOL . . . J 4 10.474 5.704 33.693 1 38.4 ? C2 GOL 442 A 1 HETATM 4 O O2 GOL . . . J 4 11.11 5.833 34.937 1 38.16 ? O2 GOL 442 A 1 HETATM 5 C C3 GOL . . . J 4 9.255 4.807 33.887 1 39.14 ? C3 GOL 442 A 1 HETATM 6 O O3 GOL . . . J 4 9.664 3.508 34.286 1 37.27 ? O3 GOL 442 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 1168 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 6 #