data_3TGB # _model_server_result.job_id QPS-fNtm_RIEwSxAMonuFQ _model_server_result.datetime_utc '2024-11-26 21:14:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tgb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":185}' # _entry.id 3TGB # _exptl.entry_id 3TGB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.43 _cell.angle_gamma 90 _cell.entry_id 3TGB _cell.length_a 69.719 _cell.length_b 43.058 _cell.length_c 52.469 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TGB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 2 1_555 A SG CYS 122 A CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 41 A CYS 41 1_555 A SG CYS 171 A CYS 171 1_555 ? B ? ? B ? ? ? ? ? ? ? 2 ? disulf ? disulf3 A SG CYS 41 A CYS 41 1_555 A SG CYS 171 A CYS 171 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A NE2 HIS 59 A HIS 59 1_555 B FE HEM . A HEM 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc2 B FE HEM . A HEM 185 1_555 C N3 IMD . A IMD 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 3TGB _atom_sites.fract_transf_matrix[1][1] 0.014343 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00111 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023224 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019116 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 185 185 HEM HEM . C 3 IMD A 1 186 186 IMD IMD . D 4 HOH A 1 201 201 HOH HOH . D 4 HOH A 2 202 202 HOH HOH . D 4 HOH A 3 203 203 HOH HOH . D 4 HOH A 4 204 204 HOH HOH . D 4 HOH A 5 205 205 HOH HOH . D 4 HOH A 6 206 206 HOH HOH . D 4 HOH A 7 207 207 HOH HOH . D 4 HOH A 8 208 208 HOH HOH . D 4 HOH A 9 209 209 HOH HOH . D 4 HOH A 10 210 210 HOH HOH . D 4 HOH A 11 211 211 HOH HOH . D 4 HOH A 12 212 212 HOH HOH . D 4 HOH A 13 213 213 HOH HOH . D 4 HOH A 14 214 214 HOH HOH . D 4 HOH A 15 215 215 HOH HOH . D 4 HOH A 16 216 216 HOH HOH . D 4 HOH A 17 217 217 HOH HOH . D 4 HOH A 18 218 218 HOH HOH . D 4 HOH A 19 219 219 HOH HOH . D 4 HOH A 20 220 220 HOH HOH . D 4 HOH A 21 221 221 HOH HOH . D 4 HOH A 22 222 222 HOH HOH . D 4 HOH A 23 223 223 HOH HOH . D 4 HOH A 24 224 224 HOH HOH . D 4 HOH A 25 225 225 HOH HOH . D 4 HOH A 26 226 226 HOH HOH . D 4 HOH A 27 227 227 HOH HOH . D 4 HOH A 28 228 228 HOH HOH . D 4 HOH A 29 229 229 HOH HOH . D 4 HOH A 30 230 230 HOH HOH . D 4 HOH A 31 231 231 HOH HOH . D 4 HOH A 32 232 232 HOH HOH . D 4 HOH A 33 233 233 HOH HOH . D 4 HOH A 34 234 234 HOH HOH . D 4 HOH A 35 235 235 HOH HOH . D 4 HOH A 36 236 236 HOH HOH . D 4 HOH A 37 237 237 HOH HOH . D 4 HOH A 38 238 238 HOH HOH . D 4 HOH A 39 239 239 HOH HOH . D 4 HOH A 40 240 240 HOH HOH . D 4 HOH A 41 241 241 HOH HOH . D 4 HOH A 42 242 242 HOH HOH . D 4 HOH A 43 243 243 HOH HOH . D 4 HOH A 44 244 244 HOH HOH . D 4 HOH A 45 245 245 HOH HOH . D 4 HOH A 46 246 246 HOH HOH . D 4 HOH A 47 247 247 HOH HOH . D 4 HOH A 48 248 248 HOH HOH . D 4 HOH A 49 249 249 HOH HOH . D 4 HOH A 50 250 250 HOH HOH . D 4 HOH A 51 251 251 HOH HOH . D 4 HOH A 52 252 252 HOH HOH . D 4 HOH A 53 253 253 HOH HOH . D 4 HOH A 54 254 254 HOH HOH . D 4 HOH A 55 255 255 HOH HOH . D 4 HOH A 56 256 256 HOH HOH . D 4 HOH A 57 257 257 HOH HOH . D 4 HOH A 58 258 258 HOH HOH . D 4 HOH A 59 259 259 HOH HOH . D 4 HOH A 60 260 260 HOH HOH . D 4 HOH A 61 261 261 HOH HOH . D 4 HOH A 62 262 262 HOH HOH . D 4 HOH A 63 263 263 HOH HOH . D 4 HOH A 64 264 264 HOH HOH . D 4 HOH A 65 265 265 HOH HOH . D 4 HOH A 66 266 266 HOH HOH . D 4 HOH A 67 267 267 HOH HOH . D 4 HOH A 68 268 268 HOH HOH . D 4 HOH A 69 269 269 HOH HOH . D 4 HOH A 70 270 270 HOH HOH . D 4 HOH A 71 271 271 HOH HOH . D 4 HOH A 72 272 272 HOH HOH . D 4 HOH A 73 273 273 HOH HOH . D 4 HOH A 74 274 274 HOH HOH . D 4 HOH A 75 275 275 HOH HOH . D 4 HOH A 76 276 276 HOH HOH . D 4 HOH A 77 277 277 HOH HOH . D 4 HOH A 78 278 278 HOH HOH . D 4 HOH A 79 279 279 HOH HOH . D 4 HOH A 80 280 280 HOH HOH . D 4 HOH A 81 281 281 HOH HOH . D 4 HOH A 82 282 282 HOH HOH . D 4 HOH A 83 283 283 HOH HOH . D 4 HOH A 84 284 284 HOH HOH . D 4 HOH A 85 285 285 HOH HOH . D 4 HOH A 86 286 286 HOH HOH . D 4 HOH A 87 287 287 HOH HOH . D 4 HOH A 88 288 288 HOH HOH . D 4 HOH A 89 289 289 HOH HOH . D 4 HOH A 90 290 290 HOH HOH . D 4 HOH A 91 291 291 HOH HOH . D 4 HOH A 92 292 292 HOH HOH . D 4 HOH A 93 293 293 HOH HOH . D 4 HOH A 94 294 294 HOH HOH . D 4 HOH A 95 295 295 HOH HOH . D 4 HOH A 96 296 296 HOH HOH . D 4 HOH A 97 297 297 HOH HOH . D 4 HOH A 98 298 298 HOH HOH . D 4 HOH A 99 299 299 HOH HOH . D 4 HOH A 100 300 300 HOH HOH . D 4 HOH A 101 301 301 HOH HOH . D 4 HOH A 102 302 302 HOH HOH . D 4 HOH A 103 303 303 HOH HOH . D 4 HOH A 104 304 304 HOH HOH . D 4 HOH A 105 305 305 HOH HOH . D 4 HOH A 106 306 306 HOH HOH . D 4 HOH A 107 307 307 HOH HOH . D 4 HOH A 108 308 308 HOH HOH . D 4 HOH A 109 309 309 HOH HOH . D 4 HOH A 110 310 310 HOH HOH . D 4 HOH A 111 311 311 HOH HOH . D 4 HOH A 112 312 312 HOH HOH . D 4 HOH A 113 313 313 HOH HOH . D 4 HOH A 114 314 314 HOH HOH . D 4 HOH A 115 315 315 HOH HOH . D 4 HOH A 116 316 316 HOH HOH . D 4 HOH A 117 317 317 HOH HOH . D 4 HOH A 118 318 318 HOH HOH . D 4 HOH A 119 319 319 HOH HOH . D 4 HOH A 120 320 320 HOH HOH . D 4 HOH A 121 321 321 HOH HOH . D 4 HOH A 122 322 322 HOH HOH . D 4 HOH A 123 323 323 HOH HOH . D 4 HOH A 124 324 324 HOH HOH . D 4 HOH A 125 325 325 HOH HOH . D 4 HOH A 126 326 326 HOH HOH . D 4 HOH A 127 327 327 HOH HOH . D 4 HOH A 128 328 328 HOH HOH . D 4 HOH A 129 329 329 HOH HOH . D 4 HOH A 130 330 330 HOH HOH . D 4 HOH A 131 331 331 HOH HOH . D 4 HOH A 132 332 332 HOH HOH . D 4 HOH A 133 333 333 HOH HOH . D 4 HOH A 134 334 334 HOH HOH . D 4 HOH A 135 335 335 HOH HOH . D 4 HOH A 136 336 336 HOH HOH . D 4 HOH A 137 337 337 HOH HOH . D 4 HOH A 138 338 338 HOH HOH . D 4 HOH A 139 339 339 HOH HOH . D 4 HOH A 140 340 340 HOH HOH . D 4 HOH A 141 341 341 HOH HOH . D 4 HOH A 142 342 342 HOH HOH . D 4 HOH A 143 343 343 HOH HOH . D 4 HOH A 144 344 344 HOH HOH . D 4 HOH A 145 345 345 HOH HOH . D 4 HOH A 146 346 346 HOH HOH . D 4 HOH A 147 347 347 HOH HOH . D 4 HOH A 148 348 348 HOH HOH . D 4 HOH A 149 349 349 HOH HOH . D 4 HOH A 150 350 350 HOH HOH . D 4 HOH A 151 351 351 HOH HOH . D 4 HOH A 152 352 352 HOH HOH . D 4 HOH A 153 353 353 HOH HOH . D 4 HOH A 154 354 354 HOH HOH . D 4 HOH A 155 355 355 HOH HOH . D 4 HOH A 156 356 356 HOH HOH . D 4 HOH A 157 357 357 HOH HOH . D 4 HOH A 158 358 358 HOH HOH . D 4 HOH A 159 359 359 HOH HOH . D 4 HOH A 160 360 360 HOH HOH . D 4 HOH A 161 361 361 HOH HOH . D 4 HOH A 162 362 362 HOH HOH . D 4 HOH A 163 363 363 HOH HOH . D 4 HOH A 164 364 364 HOH HOH . D 4 HOH A 165 365 365 HOH HOH . D 4 HOH A 166 366 366 HOH HOH . D 4 HOH A 167 367 367 HOH HOH . D 4 HOH A 168 368 368 HOH HOH . D 4 HOH A 169 369 369 HOH HOH . D 4 HOH A 170 370 370 HOH HOH . D 4 HOH A 171 371 371 HOH HOH . D 4 HOH A 172 372 372 HOH HOH . D 4 HOH A 173 373 373 HOH HOH . D 4 HOH A 174 374 374 HOH HOH . D 4 HOH A 175 375 375 HOH HOH . D 4 HOH A 176 376 376 HOH HOH . D 4 HOH A 177 377 377 HOH HOH . D 4 HOH A 178 378 378 HOH HOH . D 4 HOH A 179 379 379 HOH HOH . D 4 HOH A 180 380 380 HOH HOH . D 4 HOH A 181 381 381 HOH HOH . D 4 HOH A 182 382 382 HOH HOH . D 4 HOH A 183 383 383 HOH HOH . D 4 HOH A 184 384 384 HOH HOH . D 4 HOH A 185 385 385 HOH HOH . D 4 HOH A 186 386 386 HOH HOH . D 4 HOH A 187 387 387 HOH HOH . D 4 HOH A 188 388 388 HOH HOH . D 4 HOH A 189 389 389 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -13.455 6.495 -8.588 1 13.4 ? CHA HEM 185 A 1 HETATM 2 C CHB HEM . . . B 2 -16.323 2.941 -10.132 1 15.25 ? CHB HEM 185 A 1 HETATM 3 C CHC HEM . . . B 2 -12.47 0.703 -12.076 1 12.98 ? CHC HEM 185 A 1 HETATM 4 C CHD HEM . . . B 2 -9.584 3.709 -9.608 1 12.04 ? CHD HEM 185 A 1 HETATM 5 C C1A HEM . . . B 2 -14.56 5.753 -8.889 1 14.72 ? C1A HEM 185 A 1 HETATM 6 C C2A HEM . . . B 2 -15.922 6.172 -8.664 1 17.6 ? C2A HEM 185 A 1 HETATM 7 C C3A HEM . . . B 2 -16.73 5.198 -9.089 1 17.55 ? C3A HEM 185 A 1 HETATM 8 C C4A HEM . . . B 2 -15.894 4.129 -9.597 1 15.37 ? C4A HEM 185 A 1 HETATM 9 C CMA HEM . . . B 2 -18.275 5.189 -9.05 1 19.02 ? CMA HEM 185 A 1 HETATM 10 C CAA HEM . . . B 2 -16.329 7.522 -8.035 1 21.27 ? CAA HEM 185 A 1 HETATM 11 C CBA HEM . . . B 2 -16.511 7.344 -6.53 1 26.13 ? CBA HEM 185 A 1 HETATM 12 C CGA HEM . . . B 2 -16.723 8.679 -5.858 1 30.43 ? CGA HEM 185 A 1 HETATM 13 O O1A HEM . . . B 2 -15.851 9.575 -5.995 1 30.73 ? O1A HEM 185 A 1 HETATM 14 O O2A HEM . . . B 2 -17.766 8.844 -5.17 1 33.37 ? O2A HEM 185 A 1 HETATM 15 C C1B HEM . . . B 2 -15.533 2.063 -10.835 1 13.41 ? C1B HEM 185 A 1 HETATM 16 C C2B HEM . . . B 2 -16.014 0.936 -11.605 1 13.76 ? C2B HEM 185 A 1 HETATM 17 C C3B HEM . . . B 2 -14.956 0.311 -12.132 1 13.15 ? C3B HEM 185 A 1 HETATM 18 C C4B HEM . . . B 2 -13.768 1.03 -11.734 1 12.12 ? C4B HEM 185 A 1 HETATM 19 C CMB HEM . . . B 2 -17.502 0.554 -11.737 1 16.36 ? CMB HEM 185 A 1 HETATM 20 C CAB HEM . . . B 2 -14.941 -0.912 -13.068 1 15.16 ? CAB HEM 185 A 1 HETATM 21 C CBB HEM . . . B 2 -15.823 -0.99 -14.074 1 17.68 ? CBB HEM 185 A 1 HETATM 22 C C1C HEM . . . B 2 -11.346 1.284 -11.524 1 12.01 ? C1C HEM 185 A 1 HETATM 23 C C2C HEM . . . B 2 -9.979 0.829 -11.691 1 13.15 ? C2C HEM 185 A 1 HETATM 24 C C3C HEM . . . B 2 -9.176 1.648 -10.984 1 13.61 ? C3C HEM 185 A 1 HETATM 25 C C4C HEM . . . B 2 -10.011 2.661 -10.389 1 11.94 ? C4C HEM 185 A 1 HETATM 26 C CMC HEM . . . B 2 -9.58 -0.416 -12.519 1 13.51 ? CMC HEM 185 A 1 HETATM 27 C CAC HEM . . . B 2 -7.636 1.634 -10.824 1 15.01 ? CAC HEM 185 A 1 HETATM 28 C CBC HEM . . . B 2 -6.848 1.105 -11.756 1 18.83 ? CBC HEM 185 A 1 HETATM 29 C C1D HEM . . . B 2 -10.344 4.773 -9.201 1 11.75 ? C1D HEM 185 A 1 HETATM 30 C C2D HEM . . . B 2 -9.806 6.017 -8.702 1 13.08 ? C2D HEM 185 A 1 HETATM 31 C C3D HEM . . . B 2 -11.017 6.879 -8.382 1 13.39 ? C3D HEM 185 A 1 HETATM 32 C C4D HEM . . . B 2 -12.16 6.08 -8.732 1 11.98 ? C4D HEM 185 A 1 HETATM 33 C CMD HEM . . . B 2 -8.326 6.386 -8.522 1 15.02 ? CMD HEM 185 A 1 HETATM 34 C CAD HEM . . . B 2 -11.018 8.311 -7.822 1 14.04 ? CAD HEM 185 A 1 HETATM 35 C CBD HEM . . . B 2 -10.593 9.247 -8.949 1 14.82 ? CBD HEM 185 A 1 HETATM 36 C CGD HEM . . . B 2 -10.707 10.698 -8.555 1 15.64 ? CGD HEM 185 A 1 HETATM 37 O O1D HEM . . . B 2 -9.96 11.519 -9.127 1 15.5 ? O1D HEM 185 A 1 HETATM 38 O O2D HEM . . . B 2 -11.533 11.039 -7.672 1 18.72 ? O2D HEM 185 A 1 HETATM 39 N NA HEM . . . B 2 -14.569 4.5 -9.465 1 13.75 ? NA HEM 185 A 1 HETATM 40 N NB HEM . . . B 2 -14.151 2.099 -10.94 1 11.72 ? NB HEM 185 A 1 HETATM 41 N NC HEM . . . B 2 -11.327 2.415 -10.727 1 12.25 ? NC HEM 185 A 1 HETATM 42 N ND HEM . . . B 2 -11.737 4.844 -9.211 1 11.92 ? ND HEM 185 A 1 HETATM 43 FE FE HEM . . . B 2 -12.934 3.448 -10.078 1 12.39 ? FE HEM 185 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #