data_3TGM # _model_server_result.job_id fkLqkcGa4OUMlcSFE0tyTA _model_server_result.datetime_utc '2025-01-18 12:13:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tgm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":234}' # _entry.id 3TGM # _exptl.entry_id 3TGM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEXANE-1,6-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TGM _cell.length_a 54.61 _cell.length_b 74.98 _cell.length_c 115.28 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TGM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 25 A HIS 25 1_555 C FE HEM . A HEM 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc2 C FE HEM . A HEM 300 1_555 D NAQ 3TG . A 3TG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc3 B NE2 HIS 25 B HIS 25 1_555 F FE HEM . B HEM 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc4 F FE HEM . B HEM 300 1_555 G NAQ 3TG . B 3TG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id HEZ _chem_comp.mon_nstd_flag . _chem_comp.name HEXANE-1,6-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 HEZ sing 240 n n O1 HO1 HEZ sing 241 n n C1 C2 HEZ sing 242 n n C1 H11 HEZ sing 243 n n C1 H12 HEZ sing 244 n n C2 C3 HEZ sing 245 n n C2 H21 HEZ sing 246 n n C2 H22 HEZ sing 247 n n C3 C4 HEZ sing 248 n n C3 H31 HEZ sing 249 n n C3 H32 HEZ sing 250 n n C4 C5 HEZ sing 251 n n C4 H41 HEZ sing 252 n n C4 H42 HEZ sing 253 n n C5 C6 HEZ sing 254 n n C5 H51 HEZ sing 255 n n C5 H52 HEZ sing 256 n n C6 O6 HEZ sing 257 n n C6 H61 HEZ sing 258 n n C6 H62 HEZ sing 259 n n O6 HO6 HEZ sing 260 n n # _atom_sites.entry_id 3TGM _atom_sites.fract_transf_matrix[1][1] 0.018312 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013337 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008675 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 300 300 HEM HEM . D 3 3TG A 1 301 301 3TG 3TG . E 4 HEZ A 1 234 1 HEZ HEZ . F 2 HEM B 1 300 300 HEM HEM . G 3 3TG B 1 301 301 3TG 3TG . H 5 HOH A 1 235 3 HOH HOH . H 5 HOH A 2 236 4 HOH HOH . H 5 HOH A 3 237 7 HOH HOH . H 5 HOH A 4 238 8 HOH HOH . H 5 HOH A 5 239 9 HOH HOH . H 5 HOH A 6 240 10 HOH HOH . H 5 HOH A 7 241 11 HOH HOH . H 5 HOH A 8 242 12 HOH HOH . H 5 HOH A 9 243 15 HOH HOH . H 5 HOH A 10 244 16 HOH HOH . H 5 HOH A 11 245 18 HOH HOH . H 5 HOH A 12 246 19 HOH HOH . H 5 HOH A 13 247 22 HOH HOH . H 5 HOH A 14 248 23 HOH HOH . I 5 HOH B 1 234 1 HOH HOH . I 5 HOH B 2 235 2 HOH HOH . I 5 HOH B 3 236 5 HOH HOH . I 5 HOH B 4 237 6 HOH HOH . I 5 HOH B 5 238 13 HOH HOH . I 5 HOH B 6 239 14 HOH HOH . I 5 HOH B 7 240 17 HOH HOH . I 5 HOH B 8 241 20 HOH HOH . I 5 HOH B 9 242 21 HOH HOH . I 5 HOH B 10 243 24 HOH HOH . I 5 HOH B 11 244 25 HOH HOH . I 5 HOH B 12 245 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 HEZ . . . E 4 -16.534 -2.743 22.811 1 47.25 ? O1 HEZ 234 A 1 HETATM 2 C C1 HEZ . . . E 4 -17.435 -3.464 23.659 1 47.41 ? C1 HEZ 234 A 1 HETATM 3 C C2 HEZ . . . E 4 -17.045 -4.939 23.7 1 47.45 ? C2 HEZ 234 A 1 HETATM 4 C C3 HEZ . . . E 4 -17.508 -5.67 22.444 1 47.41 ? C3 HEZ 234 A 1 HETATM 5 C C4 HEZ . . . E 4 -16.545 -6.777 22.038 1 47.26 ? C4 HEZ 234 A 1 HETATM 6 C C5 HEZ . . . E 4 -17.152 -8.15 22.29 1 48.06 ? C5 HEZ 234 A 1 HETATM 7 C C6 HEZ . . . E 4 -16.214 -9.259 21.826 1 48.84 ? C6 HEZ 234 A 1 HETATM 8 O O6 HEZ . . . E 4 -16.718 -10.543 22.224 1 49.9 ? O6 HEZ 234 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #