data_3TGM # _model_server_result.job_id 6QKFzjHpZGr82MZ1u--tvg _model_server_result.datetime_utc '2025-01-18 12:24:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tgm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 3TGM # _exptl.entry_id 3TGM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TGM _cell.length_a 54.61 _cell.length_b 74.98 _cell.length_c 115.28 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TGM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 25 A HIS 25 1_555 C FE HEM . A HEM 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc2 C FE HEM . A HEM 300 1_555 D NAQ 3TG . A 3TG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc3 B NE2 HIS 25 B HIS 25 1_555 F FE HEM . B HEM 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc4 F FE HEM . B HEM 300 1_555 G NAQ 3TG . B 3TG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 158 n n CHA C4D HEM doub 159 n n CHA HHA HEM sing 160 n n CHB C4A HEM sing 161 n n CHB C1B HEM doub 162 n n CHB HHB HEM sing 163 n n CHC C4B HEM sing 164 n n CHC C1C HEM doub 165 n n CHC HHC HEM sing 166 n n CHD C4C HEM doub 167 n n CHD C1D HEM sing 168 n n CHD HHD HEM sing 169 n n C1A C2A HEM doub 170 n y C1A NA HEM sing 171 n y C2A C3A HEM sing 172 n y C2A CAA HEM sing 173 n n C3A C4A HEM doub 174 n y C3A CMA HEM sing 175 n n C4A NA HEM sing 176 n y CMA HMA HEM sing 177 n n CMA HMAA HEM sing 178 n n CMA HMAB HEM sing 179 n n CAA CBA HEM sing 180 n n CAA HAA HEM sing 181 n n CAA HAAA HEM sing 182 n n CBA CGA HEM sing 183 n n CBA HBA HEM sing 184 n n CBA HBAA HEM sing 185 n n CGA O1A HEM doub 186 n n CGA O2A HEM sing 187 n n C1B C2B HEM sing 188 n n C1B NB HEM sing 189 n n C2B C3B HEM doub 190 n n C2B CMB HEM sing 191 n n C3B C4B HEM sing 192 n n C3B CAB HEM sing 193 n n C4B NB HEM doub 194 n n CMB HMB HEM sing 195 n n CMB HMBA HEM sing 196 n n CMB HMBB HEM sing 197 n n CAB CBB HEM doub 198 n n CAB HAB HEM sing 199 n n CBB HBB HEM sing 200 n n CBB HBBA HEM sing 201 n n C1C C2C HEM sing 202 n y C1C NC HEM sing 203 n y C2C C3C HEM doub 204 n y C2C CMC HEM sing 205 n n C3C C4C HEM sing 206 n y C3C CAC HEM sing 207 n n C4C NC HEM sing 208 n y CMC HMC HEM sing 209 n n CMC HMCA HEM sing 210 n n CMC HMCB HEM sing 211 n n CAC CBC HEM doub 212 n n CAC HAC HEM sing 213 n n CBC HBC HEM sing 214 n n CBC HBCA HEM sing 215 n n C1D C2D HEM sing 216 n n C1D ND HEM doub 217 n n C2D C3D HEM doub 218 n n C2D CMD HEM sing 219 n n C3D C4D HEM sing 220 n n C3D CAD HEM sing 221 n n C4D ND HEM sing 222 n n CMD HMD HEM sing 223 n n CMD HMDA HEM sing 224 n n CMD HMDB HEM sing 225 n n CAD CBD HEM sing 226 n n CAD HAD HEM sing 227 n n CAD HADA HEM sing 228 n n CBD CGD HEM sing 229 n n CBD HBD HEM sing 230 n n CBD HBDA HEM sing 231 n n CGD O1D HEM doub 232 n n CGD O2D HEM sing 233 n n O2A H2A HEM sing 234 n n O2D H2D HEM sing 235 n n FE NA HEM sing 236 n n FE NB HEM sing 237 n n FE NC HEM sing 238 n n FE ND HEM sing 239 n n # _atom_sites.entry_id 3TGM _atom_sites.fract_transf_matrix[1][1] 0.018312 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013337 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008675 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 300 300 HEM HEM . D 3 3TG A 1 301 301 3TG 3TG . E 4 HEZ A 1 234 1 HEZ HEZ . F 2 HEM B 1 300 300 HEM HEM . G 3 3TG B 1 301 301 3TG 3TG . H 5 HOH A 1 235 3 HOH HOH . H 5 HOH A 2 236 4 HOH HOH . H 5 HOH A 3 237 7 HOH HOH . H 5 HOH A 4 238 8 HOH HOH . H 5 HOH A 5 239 9 HOH HOH . H 5 HOH A 6 240 10 HOH HOH . H 5 HOH A 7 241 11 HOH HOH . H 5 HOH A 8 242 12 HOH HOH . H 5 HOH A 9 243 15 HOH HOH . H 5 HOH A 10 244 16 HOH HOH . H 5 HOH A 11 245 18 HOH HOH . H 5 HOH A 12 246 19 HOH HOH . H 5 HOH A 13 247 22 HOH HOH . H 5 HOH A 14 248 23 HOH HOH . I 5 HOH B 1 234 1 HOH HOH . I 5 HOH B 2 235 2 HOH HOH . I 5 HOH B 3 236 5 HOH HOH . I 5 HOH B 4 237 6 HOH HOH . I 5 HOH B 5 238 13 HOH HOH . I 5 HOH B 6 239 14 HOH HOH . I 5 HOH B 7 240 17 HOH HOH . I 5 HOH B 8 241 20 HOH HOH . I 5 HOH B 9 242 21 HOH HOH . I 5 HOH B 10 243 24 HOH HOH . I 5 HOH B 11 244 25 HOH HOH . I 5 HOH B 12 245 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 -20.745 -18.744 7.985 1 65.5 ? CHA HEM 300 A 1 HETATM 2 C CHB HEM . . . C 2 -23.153 -18.331 3.814 1 66.3 ? CHB HEM 300 A 1 HETATM 3 C CHC HEM . . . C 2 -26.264 -15.269 5.924 1 65.76 ? CHC HEM 300 A 1 HETATM 4 C CHD HEM . . . C 2 -24.627 -16.789 10.237 1 64.93 ? CHD HEM 300 A 1 HETATM 5 C C1A HEM . . . C 2 -21.005 -18.715 6.63 1 65.78 ? C1A HEM 300 A 1 HETATM 6 C C2A HEM . . . C 2 -20.066 -18.928 5.537 1 66.33 ? C2A HEM 300 A 1 HETATM 7 C C3A HEM . . . C 2 -20.735 -18.809 4.384 1 66.24 ? C3A HEM 300 A 1 HETATM 8 C C4A HEM . . . C 2 -22.12 -18.528 4.704 1 66.12 ? C4A HEM 300 A 1 HETATM 9 C CMA HEM . . . C 2 -20.145 -18.951 2.96 1 66.06 ? CMA HEM 300 A 1 HETATM 10 C CAA HEM . . . C 2 -18.551 -19.221 5.65 1 67.06 ? CAA HEM 300 A 1 HETATM 11 C CBA HEM . . . C 2 -18.277 -20.53 6.379 1 68.22 ? CBA HEM 300 A 1 HETATM 12 C CGA HEM . . . C 2 -16.991 -20.374 7.153 1 69.33 ? CGA HEM 300 A 1 HETATM 13 O O1A HEM . . . C 2 -17.031 -20.432 8.416 1 69.91 ? O1A HEM 300 A 1 HETATM 14 O O2A HEM . . . C 2 -15.925 -20.188 6.505 1 69.35 ? O2A HEM 300 A 1 HETATM 15 C C1B HEM . . . C 2 -24.127 -17.368 3.976 1 66.22 ? C1B HEM 300 A 1 HETATM 16 C C2B HEM . . . C 2 -24.814 -16.648 2.925 1 66.26 ? C2B HEM 300 A 1 HETATM 17 C C3B HEM . . . C 2 -25.676 -15.795 3.507 1 66.31 ? C3B HEM 300 A 1 HETATM 18 C C4B HEM . . . C 2 -25.559 -15.949 4.948 1 66.04 ? C4B HEM 300 A 1 HETATM 19 C CMB HEM . . . C 2 -24.567 -16.862 1.412 1 66.14 ? CMB HEM 300 A 1 HETATM 20 C CAB HEM . . . C 2 -26.639 -14.814 2.794 1 66.64 ? CAB HEM 300 A 1 HETATM 21 C CBB HEM . . . C 2 -26.228 -14.087 1.748 1 66.81 ? CBB HEM 300 A 1 HETATM 22 C C1C HEM . . . C 2 -26.144 -15.453 7.289 1 65.3 ? C1C HEM 300 A 1 HETATM 23 C C2C HEM . . . C 2 -26.988 -14.891 8.33 1 65.31 ? C2C HEM 300 A 1 HETATM 24 C C3C HEM . . . C 2 -26.531 -15.317 9.512 1 65.18 ? C3C HEM 300 A 1 HETATM 25 C C4C HEM . . . C 2 -25.383 -16.16 9.273 1 65.14 ? C4C HEM 300 A 1 HETATM 26 C CMC HEM . . . C 2 -28.205 -13.961 8.114 1 65.63 ? CMC HEM 300 A 1 HETATM 27 C CAC HEM . . . C 2 -27.109 -14.968 10.901 1 65.2 ? CAC HEM 300 A 1 HETATM 28 C CBC HEM . . . C 2 -26.744 -13.82 11.48 1 65.55 ? CBC HEM 300 A 1 HETATM 29 C C1D HEM . . . C 2 -23.414 -17.42 10.064 1 64.7 ? C1D HEM 300 A 1 HETATM 30 C C2D HEM . . . C 2 -22.565 -17.914 11.126 1 64.63 ? C2D HEM 300 A 1 HETATM 31 C C3D HEM . . . C 2 -21.347 -18.526 10.42 1 64.8 ? C3D HEM 300 A 1 HETATM 32 C C4D HEM . . . C 2 -21.589 -18.342 9.004 1 65.09 ? C4D HEM 300 A 1 HETATM 33 C CMD HEM . . . C 2 -22.823 -17.84 12.649 1 64.44 ? CMD HEM 300 A 1 HETATM 34 C CAD HEM . . . C 2 -20.129 -19.203 11.087 1 64.77 ? CAD HEM 300 A 1 HETATM 35 C CBD HEM . . . C 2 -20.428 -20.692 11.231 1 64.93 ? CBD HEM 300 A 1 HETATM 36 C CGD HEM . . . C 2 -19.393 -21.37 12.093 1 65.2 ? CGD HEM 300 A 1 HETATM 37 O O1D HEM . . . C 2 -19.746 -21.804 13.224 1 65.02 ? O1D HEM 300 A 1 HETATM 38 O O2D HEM . . . C 2 -18.218 -21.484 11.647 1 65.1 ? O2D HEM 300 A 1 HETATM 39 N NA HEM . . . C 2 -22.244 -18.472 6.078 1 65.67 ? NA HEM 300 A 1 HETATM 40 N NB HEM . . . C 2 -24.608 -16.919 5.191 1 65.88 ? NB HEM 300 A 1 HETATM 41 N NC HEM . . . C 2 -25.181 -16.222 7.909 1 65.22 ? NC HEM 300 A 1 HETATM 42 N ND HEM . . . C 2 -22.809 -17.692 8.844 1 64.99 ? ND HEM 300 A 1 HETATM 43 FE FE HEM . . . C 2 -23.731 -17.316 7.012 1 65.25 ? FE HEM 300 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #