data_3TGR
#
_model_server_result.job_id            lu28XOxiv83sPg64rRobeA 
_model_server_result.datetime_utc      '2024-11-26 23:12:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3tgr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":886}' 
#
_entry.id    3TGR 
#
_exptl.entry_id    3TGR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    14 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3TGR 
_cell.length_a            67.86 
_cell.length_b            127.51 
_cell.length_c            193.04 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3TGR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,Q 1 1 
B,K,L,M,N,O,P,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 11 A CYS 54 1_555 A SG CYS 31 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 76 A CYS 119 1_555 A SG CYS 89 A CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 A SG CYS 102 A CYS 218 1_555 A SG CYS 131 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 A SG CYS 112 A CYS 228 1_555 A SG CYS 123 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 A SG CYS 180 A CYS 296 1_555 A SG CYS 199 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf6 A SG CYS 245 A CYS 378 1_555 A SG CYS 309 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf7 A SG CYS 252 A CYS 385 1_555 A SG CYS 282 A CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf8 B SG CYS 11 B CYS 54 1_555 B SG CYS 31 B CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf9 B SG CYS 76 B CYS 119 1_555 B SG CYS 89 B CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf10 B SG CYS 102 B CYS 218 1_555 B SG CYS 131 B CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf11 B SG CYS 112 B CYS 228 1_555 B SG CYS 123 B CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf12 B SG CYS 180 B CYS 296 1_555 B SG CYS 199 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf13 B SG CYS 245 B CYS 378 1_555 B SG CYS 309 B CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf14 B SG CYS 252 B CYS 385 1_555 B SG CYS 282 B CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 A ND2 ASN 118 A ASN 234 1_555 C C1 NAG . A NAG 734 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? 
covale ? covale2 A ND2 ASN 146 A ASN 262 1_555 D C1 NAG . A NAG 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale3 A ND2 ASN 160 A ASN 276 1_555 E C1 NAG . A NAG 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale4 A ND2 ASN 173 A ASN 289 1_555 F C1 NAG . A NAG 789 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale5 A ND2 ASN 207 A ASN 339 1_555 G C1 NAG . A NAG 839 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale6 A ND2 ASN 253 A ASN 386 1_555 H C1 NAG . A NAG 886 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale7 A ND2 ASN 259 A ASN 392 1_555 I C1 NAG . A NAG 892 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale8 A ND2 ASN 312 A ASN 448 1_555 J C1 NAG . A NAG 948 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale9 B ND2 ASN 118 B ASN 234 1_555 K C1 NAG . B NAG 734 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale10 B ND2 ASN 146 B ASN 262 1_555 L C1 NAG . B NAG 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale11 B ND2 ASN 160 B ASN 276 1_555 M C1 NAG . B NAG 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale12 B ND2 ASN 173 B ASN 289 1_555 N C1 NAG . B NAG 789 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale13 B ND2 ASN 253 B ASN 386 1_555 O C1 NAG . B NAG 886 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale14 B ND2 ASN 259 B ASN 392 1_555 P C1 NAG . B NAG 892 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3TGR 
_atom_sites.fract_transf_matrix[1][1]    0.014736 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007843 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00518 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 734 734 NAG NAG . 
D 2 NAG A 1 762 762 NAG NAG . 
E 2 NAG A 1 776 776 NAG NAG . 
F 2 NAG A 1 789 789 NAG NAG . 
G 2 NAG A 1 839 839 NAG NAG . 
H 2 NAG A 1 886 886 NAG NAG . 
I 2 NAG A 1 892 892 NAG NAG . 
J 2 NAG A 1 948 948 NAG NAG . 
K 2 NAG B 1 734 734 NAG NAG . 
L 2 NAG B 1 762 762 NAG NAG . 
M 2 NAG B 1 776 776 NAG NAG . 
N 2 NAG B 1 789 789 NAG NAG . 
O 2 NAG B 1 886 886 NAG NAG . 
P 2 NAG B 1 892 892 NAG NAG . 
Q 3 HOH A 1 3 3 HOH HOH . 
Q 3 HOH A 2 7 7 HOH HOH . 
Q 3 HOH A 3 8 8 HOH HOH . 
Q 3 HOH A 4 9 9 HOH HOH . 
Q 3 HOH A 5 11 11 HOH HOH . 
Q 3 HOH A 6 12 12 HOH HOH . 
Q 3 HOH A 7 13 13 HOH HOH . 
Q 3 HOH A 8 14 14 HOH HOH . 
Q 3 HOH A 9 18 18 HOH HOH . 
Q 3 HOH A 10 19 19 HOH HOH . 
Q 3 HOH A 11 20 20 HOH HOH . 
Q 3 HOH A 12 21 21 HOH HOH . 
Q 3 HOH A 13 23 23 HOH HOH . 
Q 3 HOH A 14 24 24 HOH HOH . 
Q 3 HOH A 15 25 25 HOH HOH . 
Q 3 HOH A 16 26 26 HOH HOH . 
Q 3 HOH A 17 28 28 HOH HOH . 
Q 3 HOH A 18 29 29 HOH HOH . 
Q 3 HOH A 19 30 30 HOH HOH . 
Q 3 HOH A 20 31 31 HOH HOH . 
Q 3 HOH A 21 32 32 HOH HOH . 
Q 3 HOH A 22 33 33 HOH HOH . 
Q 3 HOH A 23 37 37 HOH HOH . 
Q 3 HOH A 24 38 38 HOH HOH . 
Q 3 HOH A 25 40 40 HOH HOH . 
Q 3 HOH A 26 41 41 HOH HOH . 
Q 3 HOH A 27 43 43 HOH HOH . 
Q 3 HOH A 28 493 44 HOH HOH . 
Q 3 HOH A 29 494 46 HOH HOH . 
Q 3 HOH A 30 495 47 HOH HOH . 
Q 3 HOH A 31 496 49 HOH HOH . 
Q 3 HOH A 32 497 51 HOH HOH . 
Q 3 HOH A 33 498 53 HOH HOH . 
Q 3 HOH A 34 499 55 HOH HOH . 
Q 3 HOH A 35 500 56 HOH HOH . 
Q 3 HOH A 36 501 57 HOH HOH . 
Q 3 HOH A 37 502 60 HOH HOH . 
Q 3 HOH A 38 503 62 HOH HOH . 
Q 3 HOH A 39 504 63 HOH HOH . 
Q 3 HOH A 40 505 65 HOH HOH . 
Q 3 HOH A 41 506 66 HOH HOH . 
Q 3 HOH A 42 507 67 HOH HOH . 
Q 3 HOH A 43 508 69 HOH HOH . 
Q 3 HOH A 44 509 71 HOH HOH . 
Q 3 HOH A 45 510 72 HOH HOH . 
Q 3 HOH A 46 511 73 HOH HOH . 
Q 3 HOH A 47 512 75 HOH HOH . 
Q 3 HOH A 48 513 79 HOH HOH . 
Q 3 HOH A 49 514 80 HOH HOH . 
Q 3 HOH A 50 515 81 HOH HOH . 
Q 3 HOH A 51 516 82 HOH HOH . 
Q 3 HOH A 52 517 83 HOH HOH . 
Q 3 HOH A 53 518 84 HOH HOH . 
Q 3 HOH A 54 519 87 HOH HOH . 
Q 3 HOH A 55 520 88 HOH HOH . 
R 3 HOH B 1 1 1 HOH HOH . 
R 3 HOH B 2 2 2 HOH HOH . 
R 3 HOH B 3 4 4 HOH HOH . 
R 3 HOH B 4 5 5 HOH HOH . 
R 3 HOH B 5 6 6 HOH HOH . 
R 3 HOH B 6 10 10 HOH HOH . 
R 3 HOH B 7 15 15 HOH HOH . 
R 3 HOH B 8 16 16 HOH HOH . 
R 3 HOH B 9 17 17 HOH HOH . 
R 3 HOH B 10 22 22 HOH HOH . 
R 3 HOH B 11 27 27 HOH HOH . 
R 3 HOH B 12 34 34 HOH HOH . 
R 3 HOH B 13 35 35 HOH HOH . 
R 3 HOH B 14 36 36 HOH HOH . 
R 3 HOH B 15 39 39 HOH HOH . 
R 3 HOH B 16 42 42 HOH HOH . 
R 3 HOH B 17 493 45 HOH HOH . 
R 3 HOH B 18 494 48 HOH HOH . 
R 3 HOH B 19 495 50 HOH HOH . 
R 3 HOH B 20 496 52 HOH HOH . 
R 3 HOH B 21 497 54 HOH HOH . 
R 3 HOH B 22 498 58 HOH HOH . 
R 3 HOH B 23 499 59 HOH HOH . 
R 3 HOH B 24 500 61 HOH HOH . 
R 3 HOH B 25 501 64 HOH HOH . 
R 3 HOH B 26 502 68 HOH HOH . 
R 3 HOH B 27 503 70 HOH HOH . 
R 3 HOH B 28 504 74 HOH HOH . 
R 3 HOH B 29 505 76 HOH HOH . 
R 3 HOH B 30 506 77 HOH HOH . 
R 3 HOH B 31 507 78 HOH HOH . 
R 3 HOH B 32 508 85 HOH HOH . 
R 3 HOH B 33 509 86 HOH HOH . 
R 3 HOH B 34 510 89 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . H 2 -36.024 -4.572 32.733 1 53.3 ? C1 NAG 886 A 1 
HETATM 2 C C2 NAG . . . H 2 -36.061 -3.203 32.065 1 53.01 ? C2 NAG 886 A 1 
HETATM 3 C C3 NAG . . . H 2 -36.482 -2.143 33.069 1 57.26 ? C3 NAG 886 A 1 
HETATM 4 C C4 NAG . . . H 2 -37.812 -2.545 33.691 1 56.6 ? C4 NAG 886 A 1 
HETATM 5 C C5 NAG . . . H 2 -37.728 -3.95 34.277 1 60.38 ? C5 NAG 886 A 1 
HETATM 6 C C6 NAG . . . H 2 -39.079 -4.401 34.819 1 63.5 ? C6 NAG 886 A 1 
HETATM 7 C C7 NAG . . . H 2 -34.668 -2.481 30.212 1 77.58 ? C7 NAG 886 A 1 
HETATM 8 C C8 NAG . . . H 2 -33.631 -1.429 29.944 1 81.7 ? C8 NAG 886 A 1 
HETATM 9 N N2 NAG . . . H 2 -34.775 -2.869 31.482 1 69.32 ? N2 NAG 886 A 1 
HETATM 10 O O3 NAG . . . H 2 -36.601 -0.88 32.405 1 64.28 ? O3 NAG 886 A 1 
HETATM 11 O O4 NAG . . . H 2 -38.158 -1.626 34.73 1 56.67 ? O4 NAG 886 A 1 
HETATM 12 O O5 NAG . . . H 2 -37.31 -4.876 33.274 1 53.12 ? O5 NAG 886 A 1 
HETATM 13 O O6 NAG . . . H 2 -39.942 -4.752 33.731 1 72.38 ? O6 NAG 886 A 1 
HETATM 14 O O7 NAG . . . H 2 -35.368 -2.943 29.326 1 73.6 ? O7 NAG 886 A 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#