data_3TGS
#
_model_server_result.job_id            ihmU9Gh9skDwUh09_MFXMg 
_model_server_result.datetime_utc      '2024-11-26 23:11:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3tgs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    3TGS 
#
_exptl.entry_id    3TGS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    13 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3TGS 
_cell.length_a            66.96 
_cell.length_b            126 
_cell.length_c            191.48 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3TGS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 11 A CYS 54 1_555 A SG CYS 31 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 76 A CYS 119 1_555 A SG CYS 89 A CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 A SG CYS 102 A CYS 218 1_555 A SG CYS 131 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 A SG CYS 112 A CYS 228 1_555 A SG CYS 123 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 A SG CYS 180 A CYS 296 1_555 A SG CYS 199 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf6 A SG CYS 245 A CYS 378 1_555 A SG CYS 309 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf7 A SG CYS 252 A CYS 385 1_555 A SG CYS 282 A CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf8 B SG CYS 11 B CYS 54 1_555 B SG CYS 31 B CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf9 B SG CYS 76 B CYS 119 1_555 B SG CYS 89 B CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf10 B SG CYS 102 B CYS 218 1_555 B SG CYS 131 B CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf11 B SG CYS 112 B CYS 228 1_555 B SG CYS 123 B CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf12 B SG CYS 180 B CYS 296 1_555 B SG CYS 199 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf13 B SG CYS 245 B CYS 378 1_555 B SG CYS 309 B CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf14 B SG CYS 252 B CYS 385 1_555 B SG CYS 282 B CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A ND2 ASN 146 A ASN 262 1_555 D C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale2 A ND2 ASN 160 A ASN 276 1_555 E C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale3 A ND2 ASN 173 A ASN 289 1_555 F C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? 
covale ? covale4 A ND2 ASN 207 A ASN 339 1_555 G C1 NAG . A NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? 
covale ? covale5 A ND2 ASN 253 A ASN 386 1_555 H C1 NAG . A NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale6 A ND2 ASN 259 A ASN 392 1_555 J C1 NAG . A NAG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale7 A ND2 ASN 312 A ASN 448 1_555 K C1 NAG . A NAG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale8 B ND2 ASN 118 B ASN 234 1_555 L C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale9 B ND2 ASN 146 B ASN 262 1_555 N C1 NAG . B NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 ? 
covale ? covale10 B ND2 ASN 173 B ASN 289 1_555 O C1 NAG . B NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale11 B ND2 ASN 253 B ASN 386 1_555 P C1 NAG . B NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.498 ? 
covale ? covale12 B ND2 ASN 259 B ASN 392 1_555 Q C1 NAG . B NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3TGS 
_atom_sites.fract_transf_matrix[1][1]    0.014934 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007937 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005222 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 501 734 NAG NAG . 
D 2 NAG A 1 502 762 NAG NAG . 
E 2 NAG A 1 503 776 NAG NAG . 
F 2 NAG A 1 504 789 NAG NAG . 
G 2 NAG A 1 505 839 NAG NAG . 
H 2 NAG A 1 506 886 NAG NAG . 
I 3 03G A 1 507 1 03G NBD . 
J 2 NAG A 1 508 892 NAG NAG . 
K 2 NAG A 1 509 948 NAG NAG . 
L 2 NAG B 1 501 734 NAG NAG . 
M 3 03G B 1 502 1 03G NBD . 
N 2 NAG B 1 503 762 NAG NAG . 
O 2 NAG B 1 504 789 NAG NAG . 
P 2 NAG B 1 505 886 NAG NAG . 
Q 2 NAG B 1 506 892 NAG NAG . 
R 4 HOH A 1 601 2 HOH HOH . 
R 4 HOH A 2 602 3 HOH HOH . 
R 4 HOH A 3 603 4 HOH HOH . 
R 4 HOH A 4 604 5 HOH HOH . 
R 4 HOH A 5 605 7 HOH HOH . 
R 4 HOH A 6 606 8 HOH HOH . 
R 4 HOH A 7 607 9 HOH HOH . 
R 4 HOH A 8 608 15 HOH HOH . 
R 4 HOH A 9 609 21 HOH HOH . 
R 4 HOH A 10 610 22 HOH HOH . 
R 4 HOH A 11 611 25 HOH HOH . 
R 4 HOH A 12 612 26 HOH HOH . 
R 4 HOH A 13 613 29 HOH HOH . 
R 4 HOH A 14 614 31 HOH HOH . 
R 4 HOH A 15 615 32 HOH HOH . 
R 4 HOH A 16 616 33 HOH HOH . 
R 4 HOH A 17 617 35 HOH HOH . 
R 4 HOH A 18 618 36 HOH HOH . 
R 4 HOH A 19 619 37 HOH HOH . 
R 4 HOH A 20 620 38 HOH HOH . 
R 4 HOH A 21 621 40 HOH HOH . 
R 4 HOH A 22 622 43 HOH HOH . 
R 4 HOH A 23 623 45 HOH HOH . 
R 4 HOH A 24 624 46 HOH HOH . 
R 4 HOH A 25 625 47 HOH HOH . 
R 4 HOH A 26 626 49 HOH HOH . 
R 4 HOH A 27 627 51 HOH HOH . 
R 4 HOH A 28 628 52 HOH HOH . 
R 4 HOH A 29 629 54 HOH HOH . 
R 4 HOH A 30 630 55 HOH HOH . 
R 4 HOH A 31 631 57 HOH HOH . 
R 4 HOH A 32 632 58 HOH HOH . 
R 4 HOH A 33 633 62 HOH HOH . 
R 4 HOH A 34 634 64 HOH HOH . 
R 4 HOH A 35 635 65 HOH HOH . 
R 4 HOH A 36 636 66 HOH HOH . 
R 4 HOH A 37 637 67 HOH HOH . 
R 4 HOH A 38 638 71 HOH HOH . 
R 4 HOH A 39 639 72 HOH HOH . 
R 4 HOH A 40 640 73 HOH HOH . 
R 4 HOH A 41 641 76 HOH HOH . 
R 4 HOH A 42 642 77 HOH HOH . 
R 4 HOH A 43 643 79 HOH HOH . 
R 4 HOH A 44 644 80 HOH HOH . 
R 4 HOH A 45 645 84 HOH HOH . 
R 4 HOH A 46 646 86 HOH HOH . 
R 4 HOH A 47 647 87 HOH HOH . 
R 4 HOH A 48 648 88 HOH HOH . 
R 4 HOH A 49 649 90 HOH HOH . 
R 4 HOH A 50 650 92 HOH HOH . 
R 4 HOH A 51 651 93 HOH HOH . 
R 4 HOH A 52 652 95 HOH HOH . 
R 4 HOH A 53 653 96 HOH HOH . 
R 4 HOH A 54 654 99 HOH HOH . 
R 4 HOH A 55 655 100 HOH HOH . 
R 4 HOH A 56 656 101 HOH HOH . 
R 4 HOH A 57 657 103 HOH HOH . 
R 4 HOH A 58 658 104 HOH HOH . 
S 4 HOH B 1 601 1 HOH HOH . 
S 4 HOH B 2 602 6 HOH HOH . 
S 4 HOH B 3 603 10 HOH HOH . 
S 4 HOH B 4 604 11 HOH HOH . 
S 4 HOH B 5 605 12 HOH HOH . 
S 4 HOH B 6 606 13 HOH HOH . 
S 4 HOH B 7 607 14 HOH HOH . 
S 4 HOH B 8 608 16 HOH HOH . 
S 4 HOH B 9 609 17 HOH HOH . 
S 4 HOH B 10 610 18 HOH HOH . 
S 4 HOH B 11 611 19 HOH HOH . 
S 4 HOH B 12 612 20 HOH HOH . 
S 4 HOH B 13 613 23 HOH HOH . 
S 4 HOH B 14 614 24 HOH HOH . 
S 4 HOH B 15 615 27 HOH HOH . 
S 4 HOH B 16 616 28 HOH HOH . 
S 4 HOH B 17 617 30 HOH HOH . 
S 4 HOH B 18 618 34 HOH HOH . 
S 4 HOH B 19 619 39 HOH HOH . 
S 4 HOH B 20 620 41 HOH HOH . 
S 4 HOH B 21 621 42 HOH HOH . 
S 4 HOH B 22 622 44 HOH HOH . 
S 4 HOH B 23 623 48 HOH HOH . 
S 4 HOH B 24 624 50 HOH HOH . 
S 4 HOH B 25 625 53 HOH HOH . 
S 4 HOH B 26 626 56 HOH HOH . 
S 4 HOH B 27 627 59 HOH HOH . 
S 4 HOH B 28 628 60 HOH HOH . 
S 4 HOH B 29 629 61 HOH HOH . 
S 4 HOH B 30 630 63 HOH HOH . 
S 4 HOH B 31 631 68 HOH HOH . 
S 4 HOH B 32 632 69 HOH HOH . 
S 4 HOH B 33 633 70 HOH HOH . 
S 4 HOH B 34 634 74 HOH HOH . 
S 4 HOH B 35 635 75 HOH HOH . 
S 4 HOH B 36 636 78 HOH HOH . 
S 4 HOH B 37 637 81 HOH HOH . 
S 4 HOH B 38 638 82 HOH HOH . 
S 4 HOH B 39 639 83 HOH HOH . 
S 4 HOH B 40 640 85 HOH HOH . 
S 4 HOH B 41 641 89 HOH HOH . 
S 4 HOH B 42 642 91 HOH HOH . 
S 4 HOH B 43 643 94 HOH HOH . 
S 4 HOH B 44 644 98 HOH HOH . 
S 4 HOH B 45 645 102 HOH HOH . 
S 4 HOH B 46 646 105 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 2 -21.387 -21.811 24.613 1 31.2 ? C1 NAG 502 A 1 
HETATM 2 C C2 NAG . . . D 2 -22.392 -21.529 23.504 1 34.87 ? C2 NAG 502 A 1 
HETATM 3 C C3 NAG . . . D 2 -23.466 -22.601 23.508 1 43.33 ? C3 NAG 502 A 1 
HETATM 4 C C4 NAG . . . D 2 -22.803 -23.956 23.324 1 35.72 ? C4 NAG 502 A 1 
HETATM 5 C C5 NAG . . . D 2 -21.75 -24.166 24.408 1 40.08 ? C5 NAG 502 A 1 
HETATM 6 C C6 NAG . . . D 2 -21.016 -25.486 24.207 1 47.55 ? C6 NAG 502 A 1 
HETATM 7 C C7 NAG . . . D 2 -22.766 -19.271 22.745 1 44 ? C7 NAG 502 A 1 
HETATM 8 C C8 NAG . . . D 2 -23.081 -19.641 21.325 1 54.17 ? C8 NAG 502 A 1 
HETATM 9 N N2 NAG . . . D 2 -22.986 -20.219 23.647 1 35.64 ? N2 NAG 502 A 1 
HETATM 10 O O3 NAG . . . D 2 -24.41 -22.348 22.461 1 51.06 ? O3 NAG 502 A 1 
HETATM 11 O O4 NAG . . . D 2 -23.802 -24.975 23.395 1 32.9 ? O4 NAG 502 A 1 
HETATM 12 O O5 NAG . . . D 2 -20.793 -23.097 24.394 1 36.31 ? O5 NAG 502 A 1 
HETATM 13 O O6 NAG . . . D 2 -20.246 -25.435 23.001 1 56.59 ? O6 NAG 502 A 1 
HETATM 14 O O7 NAG . . . D 2 -22.336 -18.171 23.054 1 41.74 ? O7 NAG 502 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#