data_3TGS # _model_server_result.job_id THbhh_U2GwhWozmrvAzLyg _model_server_result.datetime_utc '2024-11-27 00:14:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tgs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":508}' # _entry.id 3TGS # _exptl.entry_id 3TGS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TGS _cell.length_a 66.96 _cell.length_b 126 _cell.length_c 191.48 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TGS _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 54 1_555 A SG CYS 31 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 76 A CYS 119 1_555 A SG CYS 89 A CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 102 A CYS 218 1_555 A SG CYS 131 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 112 A CYS 228 1_555 A SG CYS 123 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 180 A CYS 296 1_555 A SG CYS 199 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 A SG CYS 245 A CYS 378 1_555 A SG CYS 309 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 A SG CYS 252 A CYS 385 1_555 A SG CYS 282 A CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf8 B SG CYS 11 B CYS 54 1_555 B SG CYS 31 B CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 B SG CYS 76 B CYS 119 1_555 B SG CYS 89 B CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 B SG CYS 102 B CYS 218 1_555 B SG CYS 131 B CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 B SG CYS 112 B CYS 228 1_555 B SG CYS 123 B CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 B SG CYS 180 B CYS 296 1_555 B SG CYS 199 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf13 B SG CYS 245 B CYS 378 1_555 B SG CYS 309 B CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf14 B SG CYS 252 B CYS 385 1_555 B SG CYS 282 B CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 146 A ASN 262 1_555 D C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 160 A ASN 276 1_555 E C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale3 A ND2 ASN 173 A ASN 289 1_555 F C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? covale ? covale4 A ND2 ASN 207 A ASN 339 1_555 G C1 NAG . A NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? covale ? covale5 A ND2 ASN 253 A ASN 386 1_555 H C1 NAG . A NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale6 A ND2 ASN 259 A ASN 392 1_555 J C1 NAG . A NAG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale7 A ND2 ASN 312 A ASN 448 1_555 K C1 NAG . A NAG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale8 B ND2 ASN 118 B ASN 234 1_555 L C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale9 B ND2 ASN 146 B ASN 262 1_555 N C1 NAG . B NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 ? covale ? covale10 B ND2 ASN 173 B ASN 289 1_555 O C1 NAG . B NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale11 B ND2 ASN 253 B ASN 386 1_555 P C1 NAG . B NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.498 ? covale ? covale12 B ND2 ASN 259 B ASN 392 1_555 Q C1 NAG . B NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 285 n n C1 O1 NAG sing 286 n n C1 O5 NAG sing 287 n n C1 H1 NAG sing 288 n n C2 C3 NAG sing 289 n n C2 N2 NAG sing 290 n n C2 H2 NAG sing 291 n n C3 C4 NAG sing 292 n n C3 O3 NAG sing 293 n n C3 H3 NAG sing 294 n n C4 C5 NAG sing 295 n n C4 O4 NAG sing 296 n n C4 H4 NAG sing 297 n n C5 C6 NAG sing 298 n n C5 O5 NAG sing 299 n n C5 H5 NAG sing 300 n n C6 O6 NAG sing 301 n n C6 H61 NAG sing 302 n n C6 H62 NAG sing 303 n n C7 C8 NAG sing 304 n n C7 N2 NAG sing 305 n n C7 O7 NAG doub 306 n n C8 H81 NAG sing 307 n n C8 H82 NAG sing 308 n n C8 H83 NAG sing 309 n n N2 HN2 NAG sing 310 n n O1 HO1 NAG sing 311 n n O3 HO3 NAG sing 312 n n O4 HO4 NAG sing 313 n n O6 HO6 NAG sing 314 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3TGS _atom_sites.fract_transf_matrix[1][1] 0.014934 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007937 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005222 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 501 734 NAG NAG . D 2 NAG A 1 502 762 NAG NAG . E 2 NAG A 1 503 776 NAG NAG . F 2 NAG A 1 504 789 NAG NAG . G 2 NAG A 1 505 839 NAG NAG . H 2 NAG A 1 506 886 NAG NAG . I 3 03G A 1 507 1 03G NBD . J 2 NAG A 1 508 892 NAG NAG . K 2 NAG A 1 509 948 NAG NAG . L 2 NAG B 1 501 734 NAG NAG . M 3 03G B 1 502 1 03G NBD . N 2 NAG B 1 503 762 NAG NAG . O 2 NAG B 1 504 789 NAG NAG . P 2 NAG B 1 505 886 NAG NAG . Q 2 NAG B 1 506 892 NAG NAG . R 4 HOH A 1 601 2 HOH HOH . R 4 HOH A 2 602 3 HOH HOH . R 4 HOH A 3 603 4 HOH HOH . R 4 HOH A 4 604 5 HOH HOH . R 4 HOH A 5 605 7 HOH HOH . R 4 HOH A 6 606 8 HOH HOH . R 4 HOH A 7 607 9 HOH HOH . R 4 HOH A 8 608 15 HOH HOH . R 4 HOH A 9 609 21 HOH HOH . R 4 HOH A 10 610 22 HOH HOH . R 4 HOH A 11 611 25 HOH HOH . R 4 HOH A 12 612 26 HOH HOH . R 4 HOH A 13 613 29 HOH HOH . R 4 HOH A 14 614 31 HOH HOH . R 4 HOH A 15 615 32 HOH HOH . R 4 HOH A 16 616 33 HOH HOH . R 4 HOH A 17 617 35 HOH HOH . R 4 HOH A 18 618 36 HOH HOH . R 4 HOH A 19 619 37 HOH HOH . R 4 HOH A 20 620 38 HOH HOH . R 4 HOH A 21 621 40 HOH HOH . R 4 HOH A 22 622 43 HOH HOH . R 4 HOH A 23 623 45 HOH HOH . R 4 HOH A 24 624 46 HOH HOH . R 4 HOH A 25 625 47 HOH HOH . R 4 HOH A 26 626 49 HOH HOH . R 4 HOH A 27 627 51 HOH HOH . R 4 HOH A 28 628 52 HOH HOH . R 4 HOH A 29 629 54 HOH HOH . R 4 HOH A 30 630 55 HOH HOH . R 4 HOH A 31 631 57 HOH HOH . R 4 HOH A 32 632 58 HOH HOH . R 4 HOH A 33 633 62 HOH HOH . R 4 HOH A 34 634 64 HOH HOH . R 4 HOH A 35 635 65 HOH HOH . R 4 HOH A 36 636 66 HOH HOH . R 4 HOH A 37 637 67 HOH HOH . R 4 HOH A 38 638 71 HOH HOH . R 4 HOH A 39 639 72 HOH HOH . R 4 HOH A 40 640 73 HOH HOH . R 4 HOH A 41 641 76 HOH HOH . R 4 HOH A 42 642 77 HOH HOH . R 4 HOH A 43 643 79 HOH HOH . R 4 HOH A 44 644 80 HOH HOH . R 4 HOH A 45 645 84 HOH HOH . R 4 HOH A 46 646 86 HOH HOH . R 4 HOH A 47 647 87 HOH HOH . R 4 HOH A 48 648 88 HOH HOH . R 4 HOH A 49 649 90 HOH HOH . R 4 HOH A 50 650 92 HOH HOH . R 4 HOH A 51 651 93 HOH HOH . R 4 HOH A 52 652 95 HOH HOH . R 4 HOH A 53 653 96 HOH HOH . R 4 HOH A 54 654 99 HOH HOH . R 4 HOH A 55 655 100 HOH HOH . R 4 HOH A 56 656 101 HOH HOH . R 4 HOH A 57 657 103 HOH HOH . R 4 HOH A 58 658 104 HOH HOH . S 4 HOH B 1 601 1 HOH HOH . S 4 HOH B 2 602 6 HOH HOH . S 4 HOH B 3 603 10 HOH HOH . S 4 HOH B 4 604 11 HOH HOH . S 4 HOH B 5 605 12 HOH HOH . S 4 HOH B 6 606 13 HOH HOH . S 4 HOH B 7 607 14 HOH HOH . S 4 HOH B 8 608 16 HOH HOH . S 4 HOH B 9 609 17 HOH HOH . S 4 HOH B 10 610 18 HOH HOH . S 4 HOH B 11 611 19 HOH HOH . S 4 HOH B 12 612 20 HOH HOH . S 4 HOH B 13 613 23 HOH HOH . S 4 HOH B 14 614 24 HOH HOH . S 4 HOH B 15 615 27 HOH HOH . S 4 HOH B 16 616 28 HOH HOH . S 4 HOH B 17 617 30 HOH HOH . S 4 HOH B 18 618 34 HOH HOH . S 4 HOH B 19 619 39 HOH HOH . S 4 HOH B 20 620 41 HOH HOH . S 4 HOH B 21 621 42 HOH HOH . S 4 HOH B 22 622 44 HOH HOH . S 4 HOH B 23 623 48 HOH HOH . S 4 HOH B 24 624 50 HOH HOH . S 4 HOH B 25 625 53 HOH HOH . S 4 HOH B 26 626 56 HOH HOH . S 4 HOH B 27 627 59 HOH HOH . S 4 HOH B 28 628 60 HOH HOH . S 4 HOH B 29 629 61 HOH HOH . S 4 HOH B 30 630 63 HOH HOH . S 4 HOH B 31 631 68 HOH HOH . S 4 HOH B 32 632 69 HOH HOH . S 4 HOH B 33 633 70 HOH HOH . S 4 HOH B 34 634 74 HOH HOH . S 4 HOH B 35 635 75 HOH HOH . S 4 HOH B 36 636 78 HOH HOH . S 4 HOH B 37 637 81 HOH HOH . S 4 HOH B 38 638 82 HOH HOH . S 4 HOH B 39 639 83 HOH HOH . S 4 HOH B 40 640 85 HOH HOH . S 4 HOH B 41 641 89 HOH HOH . S 4 HOH B 42 642 91 HOH HOH . S 4 HOH B 43 643 94 HOH HOH . S 4 HOH B 44 644 98 HOH HOH . S 4 HOH B 45 645 102 HOH HOH . S 4 HOH B 46 646 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . J 2 -33.618 -4.355 41.596 1 32.16 ? C1 NAG 508 A 1 HETATM 2 C C2 NAG . . . J 2 -33.735 -2.898 41.161 1 43.96 ? C2 NAG 508 A 1 HETATM 3 C C3 NAG . . . J 2 -35.103 -2.327 41.511 1 47 ? C3 NAG 508 A 1 HETATM 4 C C4 NAG . . . J 2 -36.2 -3.229 40.971 1 38.31 ? C4 NAG 508 A 1 HETATM 5 C C5 NAG . . . J 2 -35.98 -4.643 41.495 1 36.34 ? C5 NAG 508 A 1 HETATM 6 C C6 NAG . . . J 2 -37.062 -5.59 40.993 1 39.18 ? C6 NAG 508 A 1 HETATM 7 C C7 NAG . . . J 2 -31.662 -1.619 41.153 1 49.03 ? C7 NAG 508 A 1 HETATM 8 C C8 NAG . . . J 2 -31.981 -0.719 39.995 1 47.38 ? C8 NAG 508 A 1 HETATM 9 N N2 NAG . . . J 2 -32.709 -2.104 41.812 1 49.59 ? N2 NAG 508 A 1 HETATM 10 O O3 NAG . . . J 2 -35.231 -1.012 40.962 1 54.34 ? O3 NAG 508 A 1 HETATM 11 O O4 NAG . . . J 2 -37.482 -2.741 41.377 1 38.45 ? O4 NAG 508 A 1 HETATM 12 O O5 NAG . . . J 2 -34.702 -5.115 41.064 1 32.06 ? O5 NAG 508 A 1 HETATM 13 O O6 NAG . . . J 2 -36.616 -6.941 41.122 1 32.94 ? O6 NAG 508 A 1 HETATM 14 O O7 NAG . . . J 2 -30.516 -1.884 41.476 1 56 ? O7 NAG 508 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 790 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #