data_3TGT # _model_server_result.job_id qT7OqMsWaDwGcKZu67T0Kw _model_server_result.datetime_utc '2024-11-23 02:41:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tgt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":892}' # _entry.id 3TGT # _exptl.entry_id 3TGT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TGT _cell.length_a 63.556 _cell.length_b 66.944 _cell.length_c 88.029 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TGT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 54 1_555 A SG CYS 31 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf2 A SG CYS 76 A CYS 119 1_555 A SG CYS 89 A CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 102 A CYS 218 1_555 A SG CYS 131 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 A SG CYS 112 A CYS 228 1_555 A SG CYS 123 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf5 A SG CYS 180 A CYS 296 1_555 A SG CYS 199 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf6 A SG CYS 245 A CYS 378 1_555 A SG CYS 306 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 A SG CYS 252 A CYS 385 1_555 A SG CYS 279 A CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf8 A SG CYS 262 A CYS 395 1_555 A SG CYS 271 A CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 118 A ASN 234 1_555 B C1 NAG . A NAG 734 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? covale ? covale2 A ND2 ASN 125 A ASN 241 1_555 C C1 NAG . A NAG 741 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 A ND2 ASN 146 A ASN 262 1_555 D C1 NAG . A NAG 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale4 A ND2 ASN 160 A ASN 276 1_555 E C1 NAG . A NAG 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale5 A ND2 ASN 173 A ASN 289 1_555 F C1 NAG . A NAG 789 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale6 A ND2 ASN 179 A ASN 295 1_555 G C1 NAG . A NAG 795 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale7 A ND2 ASN 202 A ASN 334 1_555 H C1 NAG . A NAG 834 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale8 A ND2 ASN 253 A ASN 386 1_555 I C1 NAG . A NAG 886 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale9 A ND2 ASN 259 A ASN 392 1_555 J C1 NAG . A NAG 892 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale10 A ND2 ASN 309 A ASN 448 1_555 K C1 NAG . A NAG 948 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 270 n n C1 O1 NAG sing 271 n n C1 O5 NAG sing 272 n n C1 H1 NAG sing 273 n n C2 C3 NAG sing 274 n n C2 N2 NAG sing 275 n n C2 H2 NAG sing 276 n n C3 C4 NAG sing 277 n n C3 O3 NAG sing 278 n n C3 H3 NAG sing 279 n n C4 C5 NAG sing 280 n n C4 O4 NAG sing 281 n n C4 H4 NAG sing 282 n n C5 C6 NAG sing 283 n n C5 O5 NAG sing 284 n n C5 H5 NAG sing 285 n n C6 O6 NAG sing 286 n n C6 H61 NAG sing 287 n n C6 H62 NAG sing 288 n n C7 C8 NAG sing 289 n n C7 N2 NAG sing 290 n n C7 O7 NAG doub 291 n n C8 H81 NAG sing 292 n n C8 H82 NAG sing 293 n n C8 H83 NAG sing 294 n n N2 HN2 NAG sing 295 n n O1 HO1 NAG sing 296 n n O3 HO3 NAG sing 297 n n O4 HO4 NAG sing 298 n n O6 HO6 NAG sing 299 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3TGT _atom_sites.fract_transf_matrix[1][1] 0.015734 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014938 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01136 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 734 734 NAG NAG . C 2 NAG A 1 741 741 NAG NAG . D 2 NAG A 1 762 762 NAG NAG . E 2 NAG A 1 776 776 NAG NAG . F 2 NAG A 1 789 789 NAG NAG . G 2 NAG A 1 795 795 NAG NAG . H 2 NAG A 1 834 834 NAG NAG . I 2 NAG A 1 886 886 NAG NAG . J 2 NAG A 1 892 892 NAG NAG . K 2 NAG A 1 948 948 NAG NAG . L 3 EPE A 1 1 1 EPE EPE . M 4 HOH A 1 2 2 HOH HOH . M 4 HOH A 2 3 3 HOH HOH . M 4 HOH A 3 4 4 HOH HOH . M 4 HOH A 4 5 5 HOH HOH . M 4 HOH A 5 6 6 HOH HOH . M 4 HOH A 6 7 7 HOH HOH . M 4 HOH A 7 8 8 HOH HOH . M 4 HOH A 8 9 9 HOH HOH . M 4 HOH A 9 10 10 HOH HOH . M 4 HOH A 10 11 11 HOH HOH . M 4 HOH A 11 12 12 HOH HOH . M 4 HOH A 12 13 13 HOH HOH . M 4 HOH A 13 14 14 HOH HOH . M 4 HOH A 14 15 15 HOH HOH . M 4 HOH A 15 16 16 HOH HOH . M 4 HOH A 16 17 17 HOH HOH . M 4 HOH A 17 18 18 HOH HOH . M 4 HOH A 18 19 19 HOH HOH . M 4 HOH A 19 20 20 HOH HOH . M 4 HOH A 20 21 21 HOH HOH . M 4 HOH A 21 22 22 HOH HOH . M 4 HOH A 22 23 23 HOH HOH . M 4 HOH A 23 24 24 HOH HOH . M 4 HOH A 24 25 25 HOH HOH . M 4 HOH A 25 26 26 HOH HOH . M 4 HOH A 26 27 27 HOH HOH . M 4 HOH A 27 28 28 HOH HOH . M 4 HOH A 28 29 29 HOH HOH . M 4 HOH A 29 30 30 HOH HOH . M 4 HOH A 30 31 31 HOH HOH . M 4 HOH A 31 32 32 HOH HOH . M 4 HOH A 32 33 33 HOH HOH . M 4 HOH A 33 34 34 HOH HOH . M 4 HOH A 34 35 35 HOH HOH . M 4 HOH A 35 36 36 HOH HOH . M 4 HOH A 36 37 37 HOH HOH . M 4 HOH A 37 38 38 HOH HOH . M 4 HOH A 38 39 39 HOH HOH . M 4 HOH A 39 40 40 HOH HOH . M 4 HOH A 40 41 41 HOH HOH . M 4 HOH A 41 42 42 HOH HOH . M 4 HOH A 42 43 43 HOH HOH . M 4 HOH A 43 125 125 HOH HOH . M 4 HOH A 44 126 126 HOH HOH . M 4 HOH A 45 127 127 HOH HOH . M 4 HOH A 46 128 128 HOH HOH . M 4 HOH A 47 129 129 HOH HOH . M 4 HOH A 48 130 130 HOH HOH . M 4 HOH A 49 131 131 HOH HOH . M 4 HOH A 50 132 132 HOH HOH . M 4 HOH A 51 133 133 HOH HOH . M 4 HOH A 52 134 134 HOH HOH . M 4 HOH A 53 135 135 HOH HOH . M 4 HOH A 54 136 136 HOH HOH . M 4 HOH A 55 137 137 HOH HOH . M 4 HOH A 56 138 138 HOH HOH . M 4 HOH A 57 139 139 HOH HOH . M 4 HOH A 58 140 140 HOH HOH . M 4 HOH A 59 141 141 HOH HOH . M 4 HOH A 60 142 142 HOH HOH . M 4 HOH A 61 143 143 HOH HOH . M 4 HOH A 62 144 144 HOH HOH . M 4 HOH A 63 145 145 HOH HOH . M 4 HOH A 64 146 146 HOH HOH . M 4 HOH A 65 147 147 HOH HOH . M 4 HOH A 66 148 148 HOH HOH . M 4 HOH A 67 493 1 HOH HOH . M 4 HOH A 68 494 44 HOH HOH . M 4 HOH A 69 495 45 HOH HOH . M 4 HOH A 70 496 46 HOH HOH . M 4 HOH A 71 497 47 HOH HOH . M 4 HOH A 72 498 48 HOH HOH . M 4 HOH A 73 499 49 HOH HOH . M 4 HOH A 74 500 50 HOH HOH . M 4 HOH A 75 501 51 HOH HOH . M 4 HOH A 76 502 52 HOH HOH . M 4 HOH A 77 503 53 HOH HOH . M 4 HOH A 78 504 54 HOH HOH . M 4 HOH A 79 505 55 HOH HOH . M 4 HOH A 80 506 56 HOH HOH . M 4 HOH A 81 507 57 HOH HOH . M 4 HOH A 82 508 58 HOH HOH . M 4 HOH A 83 509 59 HOH HOH . M 4 HOH A 84 510 60 HOH HOH . M 4 HOH A 85 511 61 HOH HOH . M 4 HOH A 86 512 62 HOH HOH . M 4 HOH A 87 513 63 HOH HOH . M 4 HOH A 88 514 64 HOH HOH . M 4 HOH A 89 515 65 HOH HOH . M 4 HOH A 90 516 66 HOH HOH . M 4 HOH A 91 517 67 HOH HOH . M 4 HOH A 92 518 68 HOH HOH . M 4 HOH A 93 519 69 HOH HOH . M 4 HOH A 94 520 70 HOH HOH . M 4 HOH A 95 521 71 HOH HOH . M 4 HOH A 96 522 72 HOH HOH . M 4 HOH A 97 523 73 HOH HOH . M 4 HOH A 98 524 74 HOH HOH . M 4 HOH A 99 525 75 HOH HOH . M 4 HOH A 100 526 76 HOH HOH . M 4 HOH A 101 527 77 HOH HOH . M 4 HOH A 102 528 78 HOH HOH . M 4 HOH A 103 529 79 HOH HOH . M 4 HOH A 104 530 80 HOH HOH . M 4 HOH A 105 531 81 HOH HOH . M 4 HOH A 106 532 82 HOH HOH . M 4 HOH A 107 533 83 HOH HOH . M 4 HOH A 108 534 84 HOH HOH . M 4 HOH A 109 535 85 HOH HOH . M 4 HOH A 110 536 86 HOH HOH . M 4 HOH A 111 537 87 HOH HOH . M 4 HOH A 112 538 88 HOH HOH . M 4 HOH A 113 539 89 HOH HOH . M 4 HOH A 114 540 90 HOH HOH . M 4 HOH A 115 541 91 HOH HOH . M 4 HOH A 116 542 92 HOH HOH . M 4 HOH A 117 543 93 HOH HOH . M 4 HOH A 118 544 94 HOH HOH . M 4 HOH A 119 545 95 HOH HOH . M 4 HOH A 120 546 96 HOH HOH . M 4 HOH A 121 547 97 HOH HOH . M 4 HOH A 122 548 98 HOH HOH . M 4 HOH A 123 549 99 HOH HOH . M 4 HOH A 124 550 100 HOH HOH . M 4 HOH A 125 551 101 HOH HOH . M 4 HOH A 126 552 102 HOH HOH . M 4 HOH A 127 553 103 HOH HOH . M 4 HOH A 128 554 104 HOH HOH . M 4 HOH A 129 555 105 HOH HOH . M 4 HOH A 130 556 106 HOH HOH . M 4 HOH A 131 557 107 HOH HOH . M 4 HOH A 132 558 108 HOH HOH . M 4 HOH A 133 559 109 HOH HOH . M 4 HOH A 134 560 110 HOH HOH . M 4 HOH A 135 561 111 HOH HOH . M 4 HOH A 136 562 112 HOH HOH . M 4 HOH A 137 563 113 HOH HOH . M 4 HOH A 138 564 114 HOH HOH . M 4 HOH A 139 565 115 HOH HOH . M 4 HOH A 140 566 116 HOH HOH . M 4 HOH A 141 567 117 HOH HOH . M 4 HOH A 142 568 118 HOH HOH . M 4 HOH A 143 569 119 HOH HOH . M 4 HOH A 144 570 120 HOH HOH . M 4 HOH A 145 571 121 HOH HOH . M 4 HOH A 146 572 122 HOH HOH . M 4 HOH A 147 573 123 HOH HOH . M 4 HOH A 148 574 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . J 2 22.341 -35.489 -16.029 1 89.32 ? C1 NAG 892 A 1 HETATM 2 C C2 NAG . . . J 2 20.99 -35.986 -16.526 1 98.2 ? C2 NAG 892 A 1 HETATM 3 C C3 NAG . . . J 2 21.026 -37.486 -16.788 1 102.81 ? C3 NAG 892 A 1 HETATM 4 C C4 NAG . . . J 2 22.187 -37.867 -17.7 1 102.05 ? C4 NAG 892 A 1 HETATM 5 C C5 NAG . . . J 2 23.447 -37.017 -17.522 1 99 ? C5 NAG 892 A 1 HETATM 6 C C6 NAG . . . J 2 24.238 -36.997 -18.832 1 98.52 ? C6 NAG 892 A 1 HETATM 7 C C7 NAG . . . J 2 18.93 -34.87 -16.046 1 98.02 ? C7 NAG 892 A 1 HETATM 8 C C8 NAG . . . J 2 19.155 -34.237 -17.389 1 96.28 ? C8 NAG 892 A 1 HETATM 9 N N2 NAG . . . J 2 19.919 -35.643 -15.611 1 99.67 ? N2 NAG 892 A 1 HETATM 10 O O3 NAG . . . J 2 19.823 -37.864 -17.423 1 104.48 ? O3 NAG 892 A 1 HETATM 11 O O4 NAG . . . J 2 22.523 -39.219 -17.459 1 103.13 ? O4 NAG 892 A 1 HETATM 12 O O5 NAG . . . J 2 23.211 -35.671 -17.128 1 94.75 ? O5 NAG 892 A 1 HETATM 13 O O6 NAG . . . J 2 25.431 -37.743 -18.703 1 97.38 ? O6 NAG 892 A 1 HETATM 14 O O7 NAG . . . J 2 17.893 -34.676 -15.413 1 96.48 ? O7 NAG 892 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #