data_3TGU
#
_model_server_result.job_id            J0hlLxnwG0X4RFEOjQGU2Q 
_model_server_result.datetime_utc      '2024-10-14 06:22:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3tgu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"EA","auth_seq_id":502}' 
#
_entry.id    3TGU 
#
_exptl.entry_id    3TGU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          19 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3TGU 
_cell.length_a            172.678 
_cell.length_b            183.305 
_cell.length_c            241.944 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3TGU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 19 EA N N 
? 19 FA N N 
? 19 NA N N 
? 19 VA N N 
? 19 WA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 H SG CYS 23 H CYS 24 1_555 H SG CYS 67 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf3 H SG CYS 39 H CYS 40 1_555 H SG CYS 53 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf4 O SG CYS 144 R CYS 144 1_555 O SG CYS 160 R CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 R SG CYS 23 U CYS 24 1_555 R SG CYS 67 U CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf6 R SG CYS 39 U CYS 40 1_555 R SG CYS 53 U CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
covale ? covale1 C C FME 1 C FME 1 1_555 C N ALA 2 C ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 D SG CYS 37 D CYS 37 1_555 DA CAB HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? 
covale ? covale3 D SG CYS 40 D CYS 40 1_555 DA CAC HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.787 ? 
covale ? covale4 I C AME 1 I AME 1 1_555 I N LEU 2 I LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale5 N SG CYS 37 Q CYS 37 1_555 TA CAB HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? 
covale ? covale6 N SG CYS 40 Q CYS 40 1_555 TA CAC HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? 
covale ? covale7 S C AME 1 V AME 1 1_555 S N LEU 2 V LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 V FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 W FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 V FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 W FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 DA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc6 D SD MET 160 D MET 160 1_555 DA FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 GA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 GA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 GA FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 GA FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc11 M NE2 HIS 84 P HIS 84 1_555 LA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc12 M NE2 HIS 98 P HIS 98 1_555 MA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc13 M NE2 HIS 183 P HIS 183 1_555 LA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc14 M NE2 HIS 197 P HIS 197 1_555 MA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
metalc ? metalc15 N NE2 HIS 41 Q HIS 41 1_555 TA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc16 N SD MET 160 Q MET 160 1_555 TA FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc17 O SG CYS 139 R CYS 139 1_555 XA FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc18 O ND1 HIS 141 R HIS 141 1_555 XA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc19 O SG CYS 158 R CYS 158 1_555 XA FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc20 O ND1 HIS 161 R HIS 161 1_555 XA FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 94 n n 
C1 C2 BOG sing 95 n n 
C1 O5 BOG sing 96 n n 
C1 H1 BOG sing 97 n n 
O1 C1' BOG sing 98 n n 
C2 O2 BOG sing 99 n n 
C2 C3 BOG sing 100 n n 
C2 H2 BOG sing 101 n n 
O2 HO2 BOG sing 102 n n 
C3 O3 BOG sing 103 n n 
C3 C4 BOG sing 104 n n 
C3 H3 BOG sing 105 n n 
O3 HO3 BOG sing 106 n n 
C4 O4 BOG sing 107 n n 
C4 C5 BOG sing 108 n n 
C4 H4 BOG sing 109 n n 
O4 HO4 BOG sing 110 n n 
C5 O5 BOG sing 111 n n 
C5 C6 BOG sing 112 n n 
C5 H5 BOG sing 113 n n 
C6 O6 BOG sing 114 n n 
C6 H61 BOG sing 115 n n 
C6 H62 BOG sing 116 n n 
O6 HO6 BOG sing 117 n n 
C1' C2' BOG sing 118 n n 
C1' "H1'1" BOG sing 119 n n 
C1' "H1'2" BOG sing 120 n n 
C2' C3' BOG sing 121 n n 
C2' "H2'1" BOG sing 122 n n 
C2' "H2'2" BOG sing 123 n n 
C3' C4' BOG sing 124 n n 
C3' "H3'1" BOG sing 125 n n 
C3' "H3'2" BOG sing 126 n n 
C4' C5' BOG sing 127 n n 
C4' "H4'1" BOG sing 128 n n 
C4' "H4'2" BOG sing 129 n n 
C5' C6' BOG sing 130 n n 
C5' "H5'1" BOG sing 131 n n 
C5' "H5'2" BOG sing 132 n n 
C6' C7' BOG sing 133 n n 
C6' "H6'1" BOG sing 134 n n 
C6' "H6'2" BOG sing 135 n n 
C7' C8' BOG sing 136 n n 
C7' "H7'1" BOG sing 137 n n 
C7' "H7'2" BOG sing 138 n n 
C8' "H8'1" BOG sing 139 n n 
C8' "H8'2" BOG sing 140 n n 
C8' "H8'3" BOG sing 141 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     3TGU 
_atom_sites.fract_transf_matrix[1][1]    0.005791 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005455 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004133 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 11 UNL A 1 501 4291 UNL UNL . 
V 12 HEM C 1 501 501 HEM HEM . 
W 12 HEM C 1 502 502 HEM HEM . 
X 13 WF3 C 1 503 2001 WF3 WF3 . 
Y 14 UQ C 1 504 2002 UQ UQ . 
Z 15 CDL C 1 505 2003 CDL CDL . 
AA 16 PEE C 1 506 2007 PEE PEE . 
BA 16 PEE C 1 507 2008 PEE PEE . 
CA 17 GOL C 1 508 2011 GOL GOL . 
DA 18 HEC D 1 501 501 HEC HEC . 
EA 19 BOG D 1 502 2009 BOG BOG . 
FA 19 BOG D 1 503 2091 BOG BOG . 
GA 20 FES E 1 501 501 FES FES . 
HA 16 PEE E 1 502 2005 PEE PEE . 
IA 15 CDL G 1 101 2004 CDL CDL . 
JA 11 UNL N 1 501 3291 UNL UNL . 
KA 16 PEE N 1 502 3008 PEE PEE . 
LA 12 HEM P 1 501 501 HEM HEM . 
MA 12 HEM P 1 502 502 HEM HEM . 
NA 19 BOG P 1 503 2010 BOG BOG . 
OA 13 WF3 P 1 504 3001 WF3 WF3 . 
PA 14 UQ P 1 505 3002 UQ UQ . 
QA 15 CDL P 1 506 3004 CDL CDL . 
RA 16 PEE P 1 507 3007 PEE PEE . 
SA 17 GOL P 1 508 3011 GOL GOL . 
TA 18 HEC Q 1 501 501 HEC HEC . 
UA 15 CDL Q 1 502 3003 CDL CDL . 
VA 19 BOG Q 1 503 3009 BOG BOG . 
WA 19 BOG Q 1 504 3091 BOG BOG . 
XA 20 FES R 1 501 501 FES FES . 
YA 16 PEE R 1 502 3005 PEE PEE . 
ZA 21 HOH C 1 601 381 HOH HOH . 
ZA 21 HOH C 2 602 382 HOH HOH . 
ZA 21 HOH C 3 603 383 HOH HOH . 
ZA 21 HOH C 4 604 384 HOH HOH . 
ZA 21 HOH C 5 605 385 HOH HOH . 
ZA 21 HOH C 6 606 386 HOH HOH . 
ZA 21 HOH C 7 607 387 HOH HOH . 
ZA 21 HOH C 8 608 1008 HOH HOH . 
ZA 21 HOH C 9 609 1238 HOH HOH . 
AB 21 HOH E 1 601 1289 HOH HOH . 
BB 21 HOH P 1 601 381 HOH HOH . 
BB 21 HOH P 2 602 382 HOH HOH . 
BB 21 HOH P 3 603 383 HOH HOH . 
BB 21 HOH P 4 604 384 HOH HOH . 
BB 21 HOH P 5 605 385 HOH HOH . 
BB 21 HOH P 6 606 386 HOH HOH . 
BB 21 HOH P 7 607 387 HOH HOH . 
BB 21 HOH P 8 608 388 HOH HOH . 
BB 21 HOH P 9 609 959 HOH HOH . 
BB 21 HOH P 10 610 1239 HOH HOH . 
CB 21 HOH R 1 601 1230 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . EA 19 32.151 139.278 57.297 1 64.02 ? C1 BOG 502 D 1 
HETATM 2 O O1 BOG . . . EA 19 32.316 137.938 56.905 1 64.07 ? O1 BOG 502 D 1 
HETATM 3 C C2 BOG . . . EA 19 33.528 139.925 57.696 1 65.4 ? C2 BOG 502 D 1 
HETATM 4 O O2 BOG . . . EA 19 34.133 139.242 58.789 1 68.48 ? O2 BOG 502 D 1 
HETATM 5 C C3 BOG . . . EA 19 33.317 141.386 58.08 1 69.11 ? C3 BOG 502 D 1 
HETATM 6 O O3 BOG . . . EA 19 34.566 141.978 58.438 1 72.25 ? O3 BOG 502 D 1 
HETATM 7 C C4 BOG . . . EA 19 32.667 142.128 56.882 1 69.77 ? C4 BOG 502 D 1 
HETATM 8 O O4 BOG . . . EA 19 32.442 143.512 57.203 1 69.75 ? O4 BOG 502 D 1 
HETATM 9 C C5 BOG . . . EA 19 31.319 141.437 56.508 1 61.91 ? C5 BOG 502 D 1 
HETATM 10 O O5 BOG . . . EA 19 31.534 140.014 56.196 1 67.08 ? O5 BOG 502 D 1 
HETATM 11 C C6 BOG . . . EA 19 30.645 142.092 55.297 1 72.8 ? C6 BOG 502 D 1 
HETATM 12 O O6 BOG . . . EA 19 31.479 142.075 54.142 1 76.19 ? O6 BOG 502 D 1 
HETATM 13 C C1' BOG . . . EA 19 31.423 136.936 57.445 1 60.04 ? C1' BOG 502 D 1 
HETATM 14 C C2' BOG . . . EA 19 31.476 135.676 56.576 1 51.68 ? C2' BOG 502 D 1 
HETATM 15 C C3' BOG . . . EA 19 31.845 134.443 57.374 1 45.23 ? C3' BOG 502 D 1 
HETATM 16 C C4' BOG . . . EA 19 30.799 133.363 57.149 1 44.27 ? C4' BOG 502 D 1 
HETATM 17 C C5' BOG . . . EA 19 30.912 132.228 58.174 1 47.78 ? C5' BOG 502 D 1 
HETATM 18 C C6' BOG . . . EA 19 29.86 131.14 57.935 1 52.63 ? C6' BOG 502 D 1 
HETATM 19 C C7' BOG . . . EA 19 30.045 129.99 58.908 1 56.17 ? C7' BOG 502 D 1 
HETATM 20 C C8' BOG . . . EA 19 28.987 128.979 58.596 1 57.98 ? C8' BOG 502 D 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    86 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           20 
#