data_3TH3
#
_model_server_result.job_id            YSX2EzBwPt3uIQvLuaXCsA 
_model_server_result.datetime_utc      '2024-11-19 07:18:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3th3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    3TH3 
#
_exptl.entry_id    3TH3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              164.156 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            alpha-L-fucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.19 
_cell.angle_gamma         90 
_cell.entry_id            3TH3 
_cell.length_a            78.079 
_cell.length_b            68.894 
_cell.length_c            79.153 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3TH3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 50 L CYS 50 1_555 A SG CYS 61 L CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf2 A SG CYS 55 L CYS 55 1_555 A SG CYS 70 L CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? 
disulf ? disulf3 A SG CYS 72 L CYS 72 1_555 A SG CYS 81 L CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf4 A SG CYS 91 L CYS 91 1_555 A SG CYS 102 L CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf5 A SG CYS 98 L CYS 98 1_555 A SG CYS 112 L CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf6 A SG CYS 114 L CYS 114 1_555 A SG CYS 127 L CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
disulf ? disulf7 A SG CYS 135 L CYS 135 1_555 B SG CYS 110 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
disulf ? disulf8 B SG CYS 7 H CYS 22 1_555 B SG CYS 12 H CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf9 B SG CYS 26 H CYS 42 1_555 B SG CYS 42 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf10 B SG CYS 158 H CYS 168 1_555 B SG CYS 177 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf11 B SG CYS 188 H CYS 191 1_555 B SG CYS 216 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf12 C SG CYS 44 T CYS 49 1_555 C SG CYS 52 T CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
disulf ? disulf13 C SG CYS 181 T CYS 186 1_555 C SG CYS 204 T CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
covale ? covale1 A OG SER 52 L SER 52 1_555 F C1 BGC . L BGC 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale2 A OG SER 60 L SER 60 1_555 D C1 FUC . L FUC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
metalc ? metalc1 A O GLY 47 L GLY 47 1_555 E CA CA . L CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? 
metalc ? metalc2 A OE1 GLN 49 L GLN 49 1_555 E CA CA . L CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc3 A OD1 ASP 63 L ASP 63 1_555 E CA CA . L CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc4 A OD2 ASP 63 L ASP 63 1_555 E CA CA . L CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.035 ? 
metalc ? metalc5 A O GLN 64 L GLN 64 1_555 E CA CA . L CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc6 E CA CA . L CA 202 1_555 J O HOH . L HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? 
metalc ? metalc7 B OE2 GLU 58 H GLU 70 1_555 H CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc8 B O ASP 60 H ASP 72 1_555 H CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? 
metalc ? metalc9 B O GLU 63 H GLU 75 1_555 H CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
metalc ? metalc10 B OE1 GLU 68 H GLU 80 1_555 H CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc11 H CA CA . H CA 302 1_555 K O HOH . H HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? 
metalc ? metalc12 H CA CA . H CA 302 1_555 K O HOH . H HOH 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
#
_chem_comp.formula           'C6 H12 O5' 
_chem_comp.formula_weight    164.156 
_chem_comp.id                FUC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              alpha-L-fucopyranose 
_chem_comp.type              'l-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     alpha-L-fucose;6-deoxy-alpha-L-galactopyranose;L-fucose;fucose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 FUC sing 209 n n 
C1 O1 FUC sing 210 n n 
C1 O5 FUC sing 211 n n 
C1 H1 FUC sing 212 n n 
C2 C3 FUC sing 213 n n 
C2 O2 FUC sing 214 n n 
C2 H2 FUC sing 215 n n 
C3 C4 FUC sing 216 n n 
C3 O3 FUC sing 217 n n 
C3 H3 FUC sing 218 n n 
C4 C5 FUC sing 219 n n 
C4 O4 FUC sing 220 n n 
C4 H4 FUC sing 221 n n 
C5 C6 FUC sing 222 n n 
C5 O5 FUC sing 223 n n 
C5 H5 FUC sing 224 n n 
C6 H61 FUC sing 225 n n 
C6 H62 FUC sing 226 n n 
C6 H63 FUC sing 227 n n 
O1 HO1 FUC sing 228 n n 
O2 HO2 FUC sing 229 n n 
O3 HO3 FUC sing 230 n n 
O4 HO4 FUC sing 231 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
FUC LFucpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
FUC a-L-fucopyranose 'COMMON NAME' GMML 1 
FUC a-L-Fucp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
FUC Fuc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3TH3 
_atom_sites.fract_transf_matrix[1][1]    0.012808 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000266 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014515 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012636 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 FUC L 1 201 3 FUC FUC . 
E 5 CA L 1 202 2 CA CA . 
F 6 BGC L 1 203 1 BGC GLC . 
G 7 0GE H 1 301 1 0GE 0GE . 
H 5 CA H 1 302 1 CA CA . 
I 8 CL H 1 303 3 CL CL . 
J 9 HOH L 1 301 91 HOH HOH . 
J 9 HOH L 2 302 180 HOH HOH . 
J 9 HOH L 3 303 76 HOH HOH . 
J 9 HOH L 4 304 184 HOH HOH . 
J 9 HOH L 5 305 100 HOH HOH . 
J 9 HOH L 6 306 181 HOH HOH . 
J 9 HOH L 7 307 182 HOH HOH . 
J 9 HOH L 8 308 135 HOH HOH . 
J 9 HOH L 9 309 145 HOH HOH . 
J 9 HOH L 10 310 34 HOH HOH . 
J 9 HOH L 11 311 30 HOH HOH . 
J 9 HOH L 12 312 167 HOH HOH . 
J 9 HOH L 13 313 183 HOH HOH . 
J 9 HOH L 14 314 155 HOH HOH . 
J 9 HOH L 15 315 39 HOH HOH . 
J 9 HOH L 16 316 69 HOH HOH . 
J 9 HOH L 17 317 57 HOH HOH . 
J 9 HOH L 18 318 89 HOH HOH . 
J 9 HOH L 19 319 142 HOH HOH . 
K 9 HOH H 1 401 80 HOH HOH . 
K 9 HOH H 2 402 15 HOH HOH . 
K 9 HOH H 3 403 19 HOH HOH . 
K 9 HOH H 4 404 29 HOH HOH . 
K 9 HOH H 5 405 159 HOH HOH . 
K 9 HOH H 6 406 131 HOH HOH . 
K 9 HOH H 7 407 105 HOH HOH . 
K 9 HOH H 8 408 18 HOH HOH . 
K 9 HOH H 9 409 156 HOH HOH . 
K 9 HOH H 10 410 64 HOH HOH . 
K 9 HOH H 11 411 90 HOH HOH . 
K 9 HOH H 12 412 24 HOH HOH . 
K 9 HOH H 13 413 129 HOH HOH . 
K 9 HOH H 14 414 44 HOH HOH . 
K 9 HOH H 15 415 27 HOH HOH . 
K 9 HOH H 16 416 13 HOH HOH . 
K 9 HOH H 17 417 103 HOH HOH . 
K 9 HOH H 18 418 71 HOH HOH . 
K 9 HOH H 19 419 158 HOH HOH . 
K 9 HOH H 20 420 62 HOH HOH . 
K 9 HOH H 21 421 171 HOH HOH . 
K 9 HOH H 22 422 43 HOH HOH . 
K 9 HOH H 23 423 128 HOH HOH . 
K 9 HOH H 24 424 93 HOH HOH . 
K 9 HOH H 25 425 98 HOH HOH . 
K 9 HOH H 26 426 3 HOH HOH . 
K 9 HOH H 27 427 119 HOH HOH . 
K 9 HOH H 28 428 2 HOH HOH . 
K 9 HOH H 29 429 5 HOH HOH . 
K 9 HOH H 30 430 32 HOH HOH . 
K 9 HOH H 31 431 52 HOH HOH . 
K 9 HOH H 32 432 4 HOH HOH . 
K 9 HOH H 33 433 11 HOH HOH . 
K 9 HOH H 34 434 149 HOH HOH . 
K 9 HOH H 35 435 163 HOH HOH . 
K 9 HOH H 36 436 59 HOH HOH . 
K 9 HOH H 37 437 51 HOH HOH . 
K 9 HOH H 38 438 117 HOH HOH . 
K 9 HOH H 39 439 50 HOH HOH . 
K 9 HOH H 40 440 113 HOH HOH . 
K 9 HOH H 41 441 164 HOH HOH . 
K 9 HOH H 42 442 157 HOH HOH . 
K 9 HOH H 43 443 20 HOH HOH . 
K 9 HOH H 44 444 9 HOH HOH . 
K 9 HOH H 45 445 33 HOH HOH . 
K 9 HOH H 46 446 160 HOH HOH . 
K 9 HOH H 47 447 125 HOH HOH . 
K 9 HOH H 48 448 122 HOH HOH . 
K 9 HOH H 49 449 54 HOH HOH . 
K 9 HOH H 50 450 21 HOH HOH . 
K 9 HOH H 51 451 36 HOH HOH . 
K 9 HOH H 52 452 147 HOH HOH . 
K 9 HOH H 53 453 7 HOH HOH . 
K 9 HOH H 54 454 175 HOH HOH . 
L 9 HOH T 1 301 138 HOH HOH . 
L 9 HOH T 2 302 14 HOH HOH . 
L 9 HOH T 3 303 78 HOH HOH . 
L 9 HOH T 4 304 65 HOH HOH . 
L 9 HOH T 5 305 38 HOH HOH . 
L 9 HOH T 6 306 168 HOH HOH . 
L 9 HOH T 7 307 178 HOH HOH . 
L 9 HOH T 8 308 140 HOH HOH . 
L 9 HOH T 9 309 170 HOH HOH . 
L 9 HOH T 10 310 179 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 FUC . . . D 4 -10.647 -3.444 32.967 1 86.64 ? C1 FUC 201 L 1 
HETATM 2 C C2 FUC . . . D 4 -11.122 -4.719 33.662 1 86.5 ? C2 FUC 201 L 1 
HETATM 3 C C3 FUC . . . D 4 -11.008 -5.874 32.673 1 86.66 ? C3 FUC 201 L 1 
HETATM 4 C C4 FUC . . . D 4 -9.585 -5.985 32.115 1 86.88 ? C4 FUC 201 L 1 
HETATM 5 C C5 FUC . . . D 4 -8.931 -4.63 31.834 1 87.52 ? C5 FUC 201 L 1 
HETATM 6 C C6 FUC . . . D 4 -7.417 -4.819 31.754 1 88.3 ? C6 FUC 201 L 1 
HETATM 7 O O2 FUC . . . D 4 -12.45 -4.598 34.101 1 85.97 ? O2 FUC 201 L 1 
HETATM 8 O O3 FUC . . . D 4 -11.387 -7.069 33.312 1 86.43 ? O3 FUC 201 L 1 
HETATM 9 O O4 FUC . . . D 4 -8.76 -6.675 33.02 1 86.02 ? O4 FUC 201 L 1 
HETATM 10 O O5 FUC . . . D 4 -9.252 -3.644 32.819 1 87.2 ? O5 FUC 201 L 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           354 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#