data_3TH3 # _model_server_result.job_id pF8jHsJ07M_rnlhPYBqlIw _model_server_result.datetime_utc '2024-11-19 07:34:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3th3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":302}' # _entry.id 3TH3 # _exptl.entry_id 3TH3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.19 _cell.angle_gamma 90 _cell.entry_id 3TH3 _cell.length_a 78.079 _cell.length_b 68.894 _cell.length_c 79.153 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TH3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 50 L CYS 50 1_555 A SG CYS 61 L CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 55 L CYS 55 1_555 A SG CYS 70 L CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? disulf ? disulf3 A SG CYS 72 L CYS 72 1_555 A SG CYS 81 L CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf4 A SG CYS 91 L CYS 91 1_555 A SG CYS 102 L CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf5 A SG CYS 98 L CYS 98 1_555 A SG CYS 112 L CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf6 A SG CYS 114 L CYS 114 1_555 A SG CYS 127 L CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf7 A SG CYS 135 L CYS 135 1_555 B SG CYS 110 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf8 B SG CYS 7 H CYS 22 1_555 B SG CYS 12 H CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf9 B SG CYS 26 H CYS 42 1_555 B SG CYS 42 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf10 B SG CYS 158 H CYS 168 1_555 B SG CYS 177 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf11 B SG CYS 188 H CYS 191 1_555 B SG CYS 216 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf12 C SG CYS 44 T CYS 49 1_555 C SG CYS 52 T CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? disulf ? disulf13 C SG CYS 181 T CYS 186 1_555 C SG CYS 204 T CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A OG SER 52 L SER 52 1_555 F C1 BGC . L BGC 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 A OG SER 60 L SER 60 1_555 D C1 FUC . L FUC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? metalc ? metalc1 A O GLY 47 L GLY 47 1_555 E CA CA . L CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc2 A OE1 GLN 49 L GLN 49 1_555 E CA CA . L CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc3 A OD1 ASP 63 L ASP 63 1_555 E CA CA . L CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc4 A OD2 ASP 63 L ASP 63 1_555 E CA CA . L CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.035 ? metalc ? metalc5 A O GLN 64 L GLN 64 1_555 E CA CA . L CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc6 E CA CA . L CA 202 1_555 J O HOH . L HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc7 B OE2 GLU 58 H GLU 70 1_555 H CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc8 B O ASP 60 H ASP 72 1_555 H CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc9 B O GLU 63 H GLU 75 1_555 H CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc10 B OE1 GLU 68 H GLU 80 1_555 H CA CA . H CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc11 H CA CA . H CA 302 1_555 K O HOH . H HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc12 H CA CA . H CA 302 1_555 K O HOH . H HOH 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3TH3 _atom_sites.fract_transf_matrix[1][1] 0.012808 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000266 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012636 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 FUC L 1 201 3 FUC FUC . E 5 CA L 1 202 2 CA CA . F 6 BGC L 1 203 1 BGC GLC . G 7 0GE H 1 301 1 0GE 0GE . H 5 CA H 1 302 1 CA CA . I 8 CL H 1 303 3 CL CL . J 9 HOH L 1 301 91 HOH HOH . J 9 HOH L 2 302 180 HOH HOH . J 9 HOH L 3 303 76 HOH HOH . J 9 HOH L 4 304 184 HOH HOH . J 9 HOH L 5 305 100 HOH HOH . J 9 HOH L 6 306 181 HOH HOH . J 9 HOH L 7 307 182 HOH HOH . J 9 HOH L 8 308 135 HOH HOH . J 9 HOH L 9 309 145 HOH HOH . J 9 HOH L 10 310 34 HOH HOH . J 9 HOH L 11 311 30 HOH HOH . J 9 HOH L 12 312 167 HOH HOH . J 9 HOH L 13 313 183 HOH HOH . J 9 HOH L 14 314 155 HOH HOH . J 9 HOH L 15 315 39 HOH HOH . J 9 HOH L 16 316 69 HOH HOH . J 9 HOH L 17 317 57 HOH HOH . J 9 HOH L 18 318 89 HOH HOH . J 9 HOH L 19 319 142 HOH HOH . K 9 HOH H 1 401 80 HOH HOH . K 9 HOH H 2 402 15 HOH HOH . K 9 HOH H 3 403 19 HOH HOH . K 9 HOH H 4 404 29 HOH HOH . K 9 HOH H 5 405 159 HOH HOH . K 9 HOH H 6 406 131 HOH HOH . K 9 HOH H 7 407 105 HOH HOH . K 9 HOH H 8 408 18 HOH HOH . K 9 HOH H 9 409 156 HOH HOH . K 9 HOH H 10 410 64 HOH HOH . K 9 HOH H 11 411 90 HOH HOH . K 9 HOH H 12 412 24 HOH HOH . K 9 HOH H 13 413 129 HOH HOH . K 9 HOH H 14 414 44 HOH HOH . K 9 HOH H 15 415 27 HOH HOH . K 9 HOH H 16 416 13 HOH HOH . K 9 HOH H 17 417 103 HOH HOH . K 9 HOH H 18 418 71 HOH HOH . K 9 HOH H 19 419 158 HOH HOH . K 9 HOH H 20 420 62 HOH HOH . K 9 HOH H 21 421 171 HOH HOH . K 9 HOH H 22 422 43 HOH HOH . K 9 HOH H 23 423 128 HOH HOH . K 9 HOH H 24 424 93 HOH HOH . K 9 HOH H 25 425 98 HOH HOH . K 9 HOH H 26 426 3 HOH HOH . K 9 HOH H 27 427 119 HOH HOH . K 9 HOH H 28 428 2 HOH HOH . K 9 HOH H 29 429 5 HOH HOH . K 9 HOH H 30 430 32 HOH HOH . K 9 HOH H 31 431 52 HOH HOH . K 9 HOH H 32 432 4 HOH HOH . K 9 HOH H 33 433 11 HOH HOH . K 9 HOH H 34 434 149 HOH HOH . K 9 HOH H 35 435 163 HOH HOH . K 9 HOH H 36 436 59 HOH HOH . K 9 HOH H 37 437 51 HOH HOH . K 9 HOH H 38 438 117 HOH HOH . K 9 HOH H 39 439 50 HOH HOH . K 9 HOH H 40 440 113 HOH HOH . K 9 HOH H 41 441 164 HOH HOH . K 9 HOH H 42 442 157 HOH HOH . K 9 HOH H 43 443 20 HOH HOH . K 9 HOH H 44 444 9 HOH HOH . K 9 HOH H 45 445 33 HOH HOH . K 9 HOH H 46 446 160 HOH HOH . K 9 HOH H 47 447 125 HOH HOH . K 9 HOH H 48 448 122 HOH HOH . K 9 HOH H 49 449 54 HOH HOH . K 9 HOH H 50 450 21 HOH HOH . K 9 HOH H 51 451 36 HOH HOH . K 9 HOH H 52 452 147 HOH HOH . K 9 HOH H 53 453 7 HOH HOH . K 9 HOH H 54 454 175 HOH HOH . L 9 HOH T 1 301 138 HOH HOH . L 9 HOH T 2 302 14 HOH HOH . L 9 HOH T 3 303 78 HOH HOH . L 9 HOH T 4 304 65 HOH HOH . L 9 HOH T 5 305 38 HOH HOH . L 9 HOH T 6 306 168 HOH HOH . L 9 HOH T 7 307 178 HOH HOH . L 9 HOH T 8 308 140 HOH HOH . L 9 HOH T 9 309 170 HOH HOH . L 9 HOH T 10 310 179 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 5 _atom_site.Cartn_x 46.525 _atom_site.Cartn_y -2.331 _atom_site.Cartn_z -0.164 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 63.46 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id H _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #