data_3TH7 # _model_server_result.job_id V5ZHFSe7VD7TxFYITjvB3Q _model_server_result.datetime_utc '2024-10-18 16:22:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3th7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":400}' # _entry.id 3TH7 # _exptl.entry_id 3TH7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3TH7 _cell.length_a 90.406 _cell.length_b 90.406 _cell.length_c 69.741 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TH7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1,2,3 B,E,F,H 2 1,4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 2_455 -y-1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -90.406 0 0 5 'crystal symmetry operation' 3_445 -x+y-1,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -45.203 -78.293893 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 101 A HIS 101 1_555 D CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc2 A OD1 ASP 124 A ASP 124 1_555 C CO CO . A CO 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc3 A OD2 ASP 124 A ASP 124 1_555 D CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? metalc ? metalc4 A ND1 HIS 126 A HIS 126 1_555 C CO CO . A CO 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc5 A OD2 ASP 128 A ASP 128 1_555 D CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc6 A OD2 ASP 232 A ASP 232 1_555 C CO CO . A CO 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc7 A OD2 ASP 232 A ASP 232 1_555 D CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc8 A OD1 ASP 234 A ASP 234 1_555 C CO CO . A CO 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc9 A OD2 ASP 234 A ASP 234 1_555 C CO CO . A CO 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc10 G O HOH . A HOH 333 1_555 D CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc11 B ND1 HIS 101 B HIS 101 1_555 E CO CO . B CO 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc12 B OD2 ASP 124 B ASP 124 1_555 E CO CO . B CO 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc13 B OD1 ASP 124 B ASP 124 1_555 F CO CO . B CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc14 B ND1 HIS 126 B HIS 126 1_555 F CO CO . B CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc15 B OD2 ASP 128 B ASP 128 1_555 E CO CO . B CO 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc16 B OD2 ASP 232 B ASP 232 1_555 E CO CO . B CO 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc17 B OD2 ASP 232 B ASP 232 1_555 F CO CO . B CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc18 B OD1 ASP 234 B ASP 234 1_555 F CO CO . B CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc19 B OD2 ASP 234 B ASP 234 1_555 F CO CO . B CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3TH7 _atom_sites.fract_transf_matrix[1][1] 0.011061 _atom_sites.fract_transf_matrix[1][2] 0.006386 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014339 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CO A 1 400 400 CO CO . D 2 CO A 1 401 401 CO CO . E 2 CO B 1 400 400 CO CO . F 2 CO B 1 401 401 CO CO . G 3 HOH A 1 323 1 HOH HOH . G 3 HOH A 2 324 2 HOH HOH . G 3 HOH A 3 325 3 HOH HOH . G 3 HOH A 4 326 6 HOH HOH . G 3 HOH A 5 327 8 HOH HOH . G 3 HOH A 6 328 9 HOH HOH . G 3 HOH A 7 329 10 HOH HOH . G 3 HOH A 8 330 11 HOH HOH . G 3 HOH A 9 331 13 HOH HOH . G 3 HOH A 10 332 15 HOH HOH . G 3 HOH A 11 333 17 HOH HOH . G 3 HOH A 12 334 18 HOH HOH . G 3 HOH A 13 335 19 HOH HOH . G 3 HOH A 14 336 20 HOH HOH . G 3 HOH A 15 337 22 HOH HOH . G 3 HOH A 16 338 23 HOH HOH . G 3 HOH A 17 339 25 HOH HOH . G 3 HOH A 18 340 26 HOH HOH . G 3 HOH A 19 341 27 HOH HOH . G 3 HOH A 20 342 28 HOH HOH . G 3 HOH A 21 343 31 HOH HOH . G 3 HOH A 22 344 33 HOH HOH . G 3 HOH A 23 345 34 HOH HOH . G 3 HOH A 24 346 36 HOH HOH . G 3 HOH A 25 347 37 HOH HOH . G 3 HOH A 26 348 40 HOH HOH . G 3 HOH A 27 349 45 HOH HOH . G 3 HOH A 28 350 47 HOH HOH . G 3 HOH A 29 351 50 HOH HOH . G 3 HOH A 30 352 51 HOH HOH . G 3 HOH A 31 353 52 HOH HOH . G 3 HOH A 32 354 54 HOH HOH . G 3 HOH A 33 355 56 HOH HOH . G 3 HOH A 34 356 58 HOH HOH . G 3 HOH A 35 357 59 HOH HOH . G 3 HOH A 36 358 60 HOH HOH . G 3 HOH A 37 359 61 HOH HOH . G 3 HOH A 38 360 65 HOH HOH . G 3 HOH A 39 361 66 HOH HOH . G 3 HOH A 40 362 67 HOH HOH . G 3 HOH A 41 363 70 HOH HOH . G 3 HOH A 42 364 72 HOH HOH . G 3 HOH A 43 365 74 HOH HOH . G 3 HOH A 44 366 75 HOH HOH . G 3 HOH A 45 367 77 HOH HOH . G 3 HOH A 46 368 78 HOH HOH . G 3 HOH A 47 369 79 HOH HOH . G 3 HOH A 48 370 80 HOH HOH . G 3 HOH A 49 371 81 HOH HOH . G 3 HOH A 50 372 85 HOH HOH . G 3 HOH A 51 373 86 HOH HOH . G 3 HOH A 52 374 87 HOH HOH . G 3 HOH A 53 375 89 HOH HOH . G 3 HOH A 54 376 90 HOH HOH . G 3 HOH A 55 377 91 HOH HOH . G 3 HOH A 56 378 93 HOH HOH . G 3 HOH A 57 379 94 HOH HOH . G 3 HOH A 58 380 96 HOH HOH . G 3 HOH A 59 381 97 HOH HOH . G 3 HOH A 60 382 99 HOH HOH . G 3 HOH A 61 383 100 HOH HOH . G 3 HOH A 62 384 101 HOH HOH . G 3 HOH A 63 385 102 HOH HOH . G 3 HOH A 64 386 103 HOH HOH . G 3 HOH A 65 387 104 HOH HOH . G 3 HOH A 66 388 105 HOH HOH . G 3 HOH A 67 389 106 HOH HOH . G 3 HOH A 68 390 107 HOH HOH . G 3 HOH A 69 391 108 HOH HOH . G 3 HOH A 70 392 109 HOH HOH . H 3 HOH B 1 323 4 HOH HOH . H 3 HOH B 2 324 5 HOH HOH . H 3 HOH B 3 325 7 HOH HOH . H 3 HOH B 4 326 12 HOH HOH . H 3 HOH B 5 327 14 HOH HOH . H 3 HOH B 6 328 16 HOH HOH . H 3 HOH B 7 329 21 HOH HOH . H 3 HOH B 8 330 24 HOH HOH . H 3 HOH B 9 331 29 HOH HOH . H 3 HOH B 10 332 30 HOH HOH . H 3 HOH B 11 333 32 HOH HOH . H 3 HOH B 12 334 35 HOH HOH . H 3 HOH B 13 335 38 HOH HOH . H 3 HOH B 14 336 39 HOH HOH . H 3 HOH B 15 337 41 HOH HOH . H 3 HOH B 16 338 42 HOH HOH . H 3 HOH B 17 339 43 HOH HOH . H 3 HOH B 18 340 44 HOH HOH . H 3 HOH B 19 341 46 HOH HOH . H 3 HOH B 20 342 48 HOH HOH . H 3 HOH B 21 343 49 HOH HOH . H 3 HOH B 22 344 53 HOH HOH . H 3 HOH B 23 345 55 HOH HOH . H 3 HOH B 24 346 57 HOH HOH . H 3 HOH B 25 347 62 HOH HOH . H 3 HOH B 26 348 63 HOH HOH . H 3 HOH B 27 349 64 HOH HOH . H 3 HOH B 28 350 68 HOH HOH . H 3 HOH B 29 351 69 HOH HOH . H 3 HOH B 30 352 71 HOH HOH . H 3 HOH B 31 353 73 HOH HOH . H 3 HOH B 32 354 76 HOH HOH . H 3 HOH B 33 355 82 HOH HOH . H 3 HOH B 34 356 83 HOH HOH . H 3 HOH B 35 357 84 HOH HOH . H 3 HOH B 36 358 88 HOH HOH . H 3 HOH B 37 359 92 HOH HOH . H 3 HOH B 38 360 95 HOH HOH . H 3 HOH B 39 361 98 HOH HOH . H 3 HOH B 40 362 110 HOH HOH . H 3 HOH B 41 363 111 HOH HOH . H 3 HOH B 42 364 112 HOH HOH . H 3 HOH B 43 365 113 HOH HOH . H 3 HOH B 44 366 114 HOH HOH . H 3 HOH B 45 367 115 HOH HOH . H 3 HOH B 46 368 116 HOH HOH . H 3 HOH B 47 369 117 HOH HOH . H 3 HOH B 48 370 118 HOH HOH . H 3 HOH B 49 371 119 HOH HOH . H 3 HOH B 50 372 120 HOH HOH . H 3 HOH B 51 373 121 HOH HOH . H 3 HOH B 52 374 122 HOH HOH . H 3 HOH B 53 375 123 HOH HOH . H 3 HOH B 54 376 124 HOH HOH . H 3 HOH B 55 377 125 HOH HOH . H 3 HOH B 56 378 126 HOH HOH . H 3 HOH B 57 379 127 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x -23.03 _atom_site.Cartn_y -20.591 _atom_site.Cartn_z 37.971 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.71 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 400 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #