data_3THB # _model_server_result.job_id rhFyEpJk5JaJH1ROCOf6iQ _model_server_result.datetime_utc '2024-11-22 19:05:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3thb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3THB # _exptl.entry_id 3THB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 453.003 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '9-chloro-2-({5-[3-(dimethylamino)propyl]-2-methylpyridin-3-yl}amino)-5,7-dihydro-6H-pyrimido[5,4-d][1]benzazepine-6-thi one' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3THB _cell.length_a 67.668 _cell.length_b 67.668 _cell.length_c 154.684 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3THB _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 51.561333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 81 A HIS 93 1_555 B ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc2 A SG CYS 200 A CYS 212 1_555 B ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? # _chem_comp.formula 'C23 H25 Cl N6 S' _chem_comp.formula_weight 453.003 _chem_comp.id 3TA _chem_comp.mon_nstd_flag . _chem_comp.name '9-chloro-2-({5-[3-(dimethylamino)propyl]-2-methylpyridin-3-yl}amino)-5,7-dihydro-6H-pyrimido[5,4-d][1]benzazepine-6-thi one' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MLN0905 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 3TA doub 1 n y C1 C6 3TA sing 2 n y C1 C11 3TA sing 3 n n C13 CL1 3TA sing 4 n n N3 C2 3TA sing 5 n y C2 H2 3TA sing 6 n n N3 C4 3TA doub 7 n y N18 C4 3TA sing 8 n n C4 N5 3TA sing 9 n y N5 C6 3TA doub 10 n y C6 C8 3TA sing 11 n n C8 C7 3TA doub 12 n y C7 N9 3TA sing 13 n n C7 C14 3TA sing 14 n y C8 C15 3TA sing 15 n y C10 N9 3TA sing 16 n n N9 HN9 3TA sing 17 n n C11 C10 3TA sing 18 n n C10 S16 3TA doub 19 n n C11 H11 3TA sing 20 n n C11 H11A 3TA sing 21 n n C15 C12 3TA doub 22 n y C12 C13 3TA sing 23 n y C12 H12 3TA sing 24 n n C14 C13 3TA doub 25 n y C14 H14 3TA sing 26 n n C15 H15 3TA sing 27 n n N18 C19 3TA sing 28 n n N18 HN18 3TA sing 29 n n C24 C19 3TA doub 30 n y C19 C20 3TA sing 31 n y C21 C20 3TA doub 32 n y C20 H20 3TA sing 33 n n C22 C21 3TA sing 34 n y C21 C25 3TA sing 35 n n N23 C22 3TA doub 36 n y C22 H22 3TA sing 37 n n N23 C24 3TA sing 38 n y C31 C24 3TA sing 39 n n C25 C26 3TA sing 40 n n C25 H25 3TA sing 41 n n C25 H25A 3TA sing 42 n n C26 C27 3TA sing 43 n n C26 H26 3TA sing 44 n n C26 H26A 3TA sing 45 n n N28 C27 3TA sing 46 n n C27 H27 3TA sing 47 n n C27 H27A 3TA sing 48 n n N28 C29 3TA sing 49 n n N28 C30 3TA sing 50 n n C29 H29 3TA sing 51 n n C29 H29A 3TA sing 52 n n C29 H29B 3TA sing 53 n n C30 H30 3TA sing 54 n n C30 H30A 3TA sing 55 n n C30 H30B 3TA sing 56 n n C31 H31 3TA sing 57 n n C31 H31A 3TA sing 58 n n C31 H31B 3TA sing 59 n n # _atom_sites.entry_id 3THB _atom_sites.fract_transf_matrix[1][1] 0.014778 _atom_sites.fract_transf_matrix[1][2] 0.008532 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017064 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006465 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 502 502 ZN ZN . C 3 3TA A 1 1 1 3TA 3TA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3TA . . . C 3 -43.704 14.592 10.192 1 93.88 ? C1 3TA 1 A 1 HETATM 2 CL CL1 3TA . . . C 3 -43.387 9.234 14.507 1 111.01 ? CL1 3TA 1 A 1 HETATM 3 C C2 3TA . . . C 3 -43.972 15.287 9.02 1 94.86 ? C2 3TA 1 A 1 HETATM 4 N N3 3TA . . . C 3 -44.459 14.639 7.971 1 92.56 ? N3 3TA 1 A 1 HETATM 5 C C4 3TA . . . C 3 -44.695 13.324 8.024 1 91.17 ? C4 3TA 1 A 1 HETATM 6 N N5 3TA . . . C 3 -44.451 12.626 9.143 1 94.33 ? N5 3TA 1 A 1 HETATM 7 C C6 3TA . . . C 3 -43.973 13.239 10.234 1 95.39 ? C6 3TA 1 A 1 HETATM 8 C C7 3TA . . . C 3 -42.771 12.535 12.278 1 96.71 ? C7 3TA 1 A 1 HETATM 9 C C8 3TA . . . C 3 -43.749 12.377 11.296 1 97.88 ? C8 3TA 1 A 1 HETATM 10 N N9 3TA . . . C 3 -41.872 13.528 12.368 1 91.76 ? N9 3TA 1 A 1 HETATM 11 C C10 3TA . . . C 3 -41.935 14.799 11.94 1 89.49 ? C10 3TA 1 A 1 HETATM 12 C C11 3TA . . . C 3 -43.151 15.465 11.312 1 90.94 ? C11 3TA 1 A 1 HETATM 13 C C12 3TA . . . C 3 -44.476 10.317 12.3 1 100.47 ? C12 3TA 1 A 1 HETATM 14 C C13 3TA . . . C 3 -43.5 10.458 13.284 1 100.85 ? C13 3TA 1 A 1 HETATM 15 C C14 3TA . . . C 3 -42.639 11.564 13.274 1 97.86 ? C14 3TA 1 A 1 HETATM 16 C C15 3TA . . . C 3 -44.603 11.277 11.301 1 99.71 ? C15 3TA 1 A 1 HETATM 17 S S16 3TA . . . C 3 -40.511 15.809 12.138 1 87.85 ? S16 3TA 1 A 1 HETATM 18 N N18 3TA . . . C 3 -45.169 12.721 6.951 1 91.18 ? N18 3TA 1 A 1 HETATM 19 C C19 3TA . . . C 3 -45.661 11.478 6.964 1 92.3 ? C19 3TA 1 A 1 HETATM 20 C C20 3TA . . . C 3 -44.899 10.399 7.407 1 85.76 ? C20 3TA 1 A 1 HETATM 21 C C21 3TA . . . C 3 -45.474 9.131 7.387 1 89.35 ? C21 3TA 1 A 1 HETATM 22 C C22 3TA . . . C 3 -46.775 8.977 6.918 1 89.62 ? C22 3TA 1 A 1 HETATM 23 N N23 3TA . . . C 3 -47.479 10.01 6.504 1 92.9 ? N23 3TA 1 A 1 HETATM 24 C C24 3TA . . . C 3 -46.962 11.244 6.507 1 94.35 ? C24 3TA 1 A 1 HETATM 25 C C25 3TA . . . C 3 -44.702 7.88 7.855 1 89.27 ? C25 3TA 1 A 1 HETATM 26 C C26 3TA . . . C 3 -44.683 7.695 9.373 1 86.25 ? C26 3TA 1 A 1 HETATM 27 C C27 3TA . . . C 3 -43.952 6.409 9.792 1 87.61 ? C27 3TA 1 A 1 HETATM 28 N N28 3TA . . . C 3 -42.583 6.25 9.225 1 91.77 ? N28 3TA 1 A 1 HETATM 29 C C29 3TA . . . C 3 -41.629 7.351 9.513 1 79.11 ? C29 3TA 1 A 1 HETATM 30 C C30 3TA . . . C 3 -42.031 4.981 9.75 1 91.47 ? C30 3TA 1 A 1 HETATM 31 C C31 3TA . . . C 3 -47.836 12.39 6.006 1 98.11 ? C31 3TA 1 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #