data_3THK # _model_server_result.job_id 0C5pOhc520ykOE9NvS0uqg _model_server_result.datetime_utc '2024-11-12 20:56:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3thk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":85}' # _entry.id 3THK # _exptl.entry_id 3THK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3THK _cell.length_a 36.38 _cell.length_b 36.38 _cell.length_c 112.14 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3THK _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,H,J 1 1 B,D,F,G,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BME sing 70 n n C1 O1 BME sing 71 n n C1 H11 BME sing 72 n n C1 H12 BME sing 73 n n C2 S2 BME sing 74 n n C2 H21 BME sing 75 n n C2 H22 BME sing 76 n n O1 HO1 BME sing 77 n n S2 HS2 BME sing 78 n n # _atom_sites.entry_id 3THK _atom_sites.fract_transf_matrix[1][1] 0.027488 _atom_sites.fract_transf_matrix[1][2] 0.01587 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.03174 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008917 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 BME A 1 84 84 BME BME . F 4 SO4 B 1 84 84 SO4 SO4 . G 3 BME B 1 85 85 BME BME . H 5 HOH A 1 85 85 HOH HOH . H 5 HOH A 2 86 86 HOH HOH . H 5 HOH A 3 87 87 HOH HOH . H 5 HOH A 4 88 88 HOH HOH . H 5 HOH A 5 89 89 HOH HOH . H 5 HOH A 6 90 90 HOH HOH . H 5 HOH A 7 91 91 HOH HOH . H 5 HOH A 8 92 92 HOH HOH . H 5 HOH A 9 93 93 HOH HOH . H 5 HOH A 10 94 94 HOH HOH . H 5 HOH A 11 95 95 HOH HOH . H 5 HOH A 12 96 96 HOH HOH . H 5 HOH A 13 97 97 HOH HOH . H 5 HOH A 14 98 98 HOH HOH . H 5 HOH A 15 99 99 HOH HOH . H 5 HOH A 16 100 100 HOH HOH . H 5 HOH A 17 102 102 HOH HOH . H 5 HOH A 18 103 103 HOH HOH . H 5 HOH A 19 104 104 HOH HOH . H 5 HOH A 20 105 105 HOH HOH . H 5 HOH A 21 106 106 HOH HOH . H 5 HOH A 22 107 107 HOH HOH . H 5 HOH A 23 108 108 HOH HOH . H 5 HOH A 24 109 109 HOH HOH . H 5 HOH A 25 110 110 HOH HOH . H 5 HOH A 26 111 111 HOH HOH . H 5 HOH A 27 112 112 HOH HOH . H 5 HOH A 28 113 113 HOH HOH . I 5 HOH B 1 86 86 HOH HOH . I 5 HOH B 2 87 87 HOH HOH . I 5 HOH B 3 88 88 HOH HOH . I 5 HOH B 4 89 89 HOH HOH . I 5 HOH B 5 90 90 HOH HOH . I 5 HOH B 6 91 91 HOH HOH . I 5 HOH B 7 92 92 HOH HOH . I 5 HOH B 8 94 94 HOH HOH . I 5 HOH B 9 95 95 HOH HOH . I 5 HOH B 10 97 97 HOH HOH . I 5 HOH B 11 98 98 HOH HOH . I 5 HOH B 12 99 99 HOH HOH . I 5 HOH B 13 100 100 HOH HOH . I 5 HOH B 14 101 101 HOH HOH . J 5 HOH C 1 101 101 HOH HOH . K 5 HOH D 1 93 93 HOH HOH . K 5 HOH D 2 96 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . . . G 3 6.375 14.132 0.823 1 79.87 ? C1 BME 85 B 1 HETATM 2 C C2 BME . . . G 3 6.581 14.79 2.188 1 79.78 ? C2 BME 85 B 1 HETATM 3 O O1 BME . . . G 3 6.022 12.758 1.004 1 79.75 ? O1 BME 85 B 1 HETATM 4 S S2 BME . . . G 3 8.35 14.832 2.585 1 79.96 ? S2 BME 85 B 1 # _model_server_stats.io_time_ms 91 _model_server_stats.parse_time_ms 62 _model_server_stats.create_model_time_ms 103 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #