data_3THO
#
_model_server_result.job_id            tuxQ14TXwm6gHUqhJc1ohA 
_model_server_result.datetime_utc      '2025-03-04 07:25:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3tho 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":2}' 
#
_entry.id    3THO 
#
_exptl.entry_id    3THO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3THO 
_cell.length_a            121.772 
_cell.length_b            121.772 
_cell.length_c            135.126 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3THO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 2 1,2 
A,C,D,E,F,G,H,I,J,Q 3 1,2 
B,K,L,M,N,O,P,R 3 3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 45.042 
3 'crystal symmetry operation' 3_445 -x+y-1,-x-1,z+1/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -60.886 -105.457645 45.042 
4 'crystal symmetry operation' 4_565 y,x+1,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -60.886 105.457645 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 K N N 
? 7 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 334 A CYS 804 1_555 A SG CYS 360 A CYS 830 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc1 A OE1 GLU 328 A GLU 798 1_555 D MG MG . A MG 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? 
metalc ? metalc2 D MG MG . A MG 853 1_555 C O2A ADP . A ADP 1452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? 
metalc ? metalc3 K MN MN . B MN 1 1_555 B OD2 ASP 8 B ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? 
metalc ? metalc4 K MN MN . B MN 1 1_555 B NE2 HIS 10 B HIS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? 
metalc ? metalc5 K MN MN . B MN 1 1_555 B OD2 ASP 52 B ASP 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? 
metalc ? metalc6 L MN MN . B MN 2 1_555 B OD2 ASP 52 B ASP 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc7 L MN MN . B MN 2 1_555 B OD1 ASN 87 B ASN 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
metalc ? metalc8 L MN MN . B MN 2 1_555 B NE2 HIS 174 B HIS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc9 L MN MN . B MN 2 1_555 B ND1 HIS 210 B HIS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3THO 
_atom_sites.fract_transf_matrix[1][1]    0.008212 
_atom_sites.fract_transf_matrix[1][2]    0.004741 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009482 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0074 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ADP A 1 1452 1452 ADP ADP . 
D 4 MG A 1 853 1 MG MG . 
E 5 SO4 A 1 854 2 SO4 SO4 . 
F 5 SO4 A 1 855 3 SO4 SO4 . 
G 5 SO4 A 1 856 6 SO4 SO4 . 
H 5 SO4 A 1 857 8 SO4 SO4 . 
I 5 SO4 A 1 858 9 SO4 SO4 . 
J 6 PO4 A 1 859 1 PO4 PO4 . 
K 7 MN B 1 1 1 MN MN . 
L 7 MN B 1 2 2 MN MN . 
M 5 SO4 B 1 386 1 SO4 SO4 . 
N 5 SO4 B 1 4 4 SO4 SO4 . 
O 5 SO4 B 1 5 5 SO4 SO4 . 
P 5 SO4 B 1 387 7 SO4 SO4 . 
Q 8 HOH A 1 860 9 HOH HOH . 
Q 8 HOH A 2 861 11 HOH HOH . 
Q 8 HOH A 3 862 12 HOH HOH . 
Q 8 HOH A 4 863 13 HOH HOH . 
Q 8 HOH A 5 864 15 HOH HOH . 
Q 8 HOH A 6 865 16 HOH HOH . 
Q 8 HOH A 7 866 20 HOH HOH . 
Q 8 HOH A 8 867 21 HOH HOH . 
Q 8 HOH A 9 868 23 HOH HOH . 
Q 8 HOH A 10 869 24 HOH HOH . 
Q 8 HOH A 11 870 30 HOH HOH . 
Q 8 HOH A 12 871 34 HOH HOH . 
Q 8 HOH A 13 872 38 HOH HOH . 
Q 8 HOH A 14 873 39 HOH HOH . 
Q 8 HOH A 15 874 40 HOH HOH . 
Q 8 HOH A 16 875 42 HOH HOH . 
Q 8 HOH A 17 876 43 HOH HOH . 
Q 8 HOH A 18 877 44 HOH HOH . 
R 8 HOH B 1 3 3 HOH HOH . 
R 8 HOH B 2 6 6 HOH HOH . 
R 8 HOH B 3 388 1 HOH HOH . 
R 8 HOH B 4 389 2 HOH HOH . 
R 8 HOH B 5 390 4 HOH HOH . 
R 8 HOH B 6 391 5 HOH HOH . 
R 8 HOH B 7 392 7 HOH HOH . 
R 8 HOH B 8 393 8 HOH HOH . 
R 8 HOH B 9 394 10 HOH HOH . 
R 8 HOH B 10 395 14 HOH HOH . 
R 8 HOH B 11 396 17 HOH HOH . 
R 8 HOH B 12 397 18 HOH HOH . 
R 8 HOH B 13 398 19 HOH HOH . 
R 8 HOH B 14 399 22 HOH HOH . 
R 8 HOH B 15 400 25 HOH HOH . 
R 8 HOH B 16 401 26 HOH HOH . 
R 8 HOH B 17 402 27 HOH HOH . 
R 8 HOH B 18 403 28 HOH HOH . 
R 8 HOH B 19 404 29 HOH HOH . 
R 8 HOH B 20 405 31 HOH HOH . 
R 8 HOH B 21 406 32 HOH HOH . 
R 8 HOH B 22 407 33 HOH HOH . 
R 8 HOH B 23 408 35 HOH HOH . 
R 8 HOH B 24 409 37 HOH HOH . 
R 8 HOH B 25 410 41 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         L 
_atom_site.label_entity_id       7 
_atom_site.Cartn_x               -68.444 
_atom_site.Cartn_y               3.08 
_atom_site.Cartn_z               4.021 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        38.26 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           2 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           584 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#