data_3THT
#
_model_server_result.job_id            MbnM0RL460Dsa0pxDfTPCg 
_model_server_result.datetime_utc      '2024-11-04 18:47:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3tht 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":403}' 
#
_entry.id    3THT 
#
_exptl.entry_id    3THT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              146.098 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-OXOGLUTARIC ACID' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.73 
_cell.angle_gamma         90 
_cell.entry_id            3THT 
_cell.length_a            150.166 
_cell.length_b            73.279 
_cell.length_c            149.814 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3THT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
PISA tetrameric 4 software_defined_assembly 5 
PISA dimeric 2 software_defined_assembly 6 
PISA tetrameric 4 software_defined_assembly 7 
PISA dimeric 2 software_defined_assembly 8 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,Q 1 1 
B,H,I,J,R 2 1 
C,K,L,M,S 3 1 
D,N,O,P,T 4 1 
A,B,E,F,G,H,I,J,Q,R 5 1,2 
A,B,E,F,G,H,I,J,Q,R 6 1 
C,D,K,L,M,N,O,P,S,T 7 1,3 
C,D,K,L,M,N,O,P,S,T 8 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -57.886486 0 138.178831 
3 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -150.166 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 J N N 
? 4 M N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 214 A HIS 238 1_555 F MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? 
metalc ? metalc2 A OD2 ASP 216 A ASP 240 1_555 F MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc3 A ND1 HIS 218 A HIS 242 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc4 A NE2 HIS 268 A HIS 292 1_555 F MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc5 A SG CYS 317 A CYS 341 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? 
metalc ? metalc6 A SG CYS 319 A CYS 343 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc7 A SG CYS 325 A CYS 349 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc8 F MN MN . A MN 402 1_555 G O2 AKG . A AKG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc9 F MN MN . A MN 402 1_555 G O5 AKG . A AKG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
metalc ? metalc10 B NE2 HIS 214 B HIS 238 1_555 I MN MN . B MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc11 B OD1 ASP 216 B ASP 240 1_555 I MN MN . B MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc12 B ND1 HIS 218 B HIS 242 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc13 B NE2 HIS 268 B HIS 292 1_555 I MN MN . B MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc14 B SG CYS 317 B CYS 341 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc15 B SG CYS 319 B CYS 343 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc16 B SG CYS 325 B CYS 349 1_555 H ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc17 I MN MN . B MN 402 1_555 J O5 AKG . B AKG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc18 I MN MN . B MN 402 1_555 J O1 AKG . B AKG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc19 C NE2 HIS 214 C HIS 238 1_555 L MN MN . C MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc20 C OD2 ASP 216 C ASP 240 1_555 L MN MN . C MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc21 C ND1 HIS 218 C HIS 242 1_555 K ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc22 C NE2 HIS 268 C HIS 292 1_555 L MN MN . C MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc23 C SG CYS 317 C CYS 341 1_555 K ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc24 C SG CYS 319 C CYS 343 1_555 K ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc25 C SG CYS 325 C CYS 349 1_555 K ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc26 L MN MN . C MN 402 1_555 M O2 AKG . C AKG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc27 D NE2 HIS 214 D HIS 238 1_555 O MN MN . D MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? 
metalc ? metalc28 D OD1 ASP 216 D ASP 240 1_555 O MN MN . D MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc29 D ND1 HIS 218 D HIS 242 1_555 N ZN ZN . D ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc30 D NE2 HIS 268 D HIS 292 1_555 O MN MN . D MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
metalc ? metalc31 D SG CYS 317 D CYS 341 1_555 N ZN ZN . D ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc32 D SG CYS 319 D CYS 343 1_555 N ZN ZN . D ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc33 D SG CYS 325 D CYS 349 1_555 N ZN ZN . D ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc34 O MN MN . D MN 402 1_555 P O1 AKG . D AKG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc35 O MN MN . D MN 402 1_555 P O5 AKG . D AKG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? 
#
_chem_comp.formula           'C5 H6 O5' 
_chem_comp.formula_weight    146.098 
_chem_comp.id                AKG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-OXOGLUTARIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 AKG doub 1 n n 
C1 O2 AKG sing 2 n n 
C1 C2 AKG sing 3 n n 
O2 HO2 AKG sing 4 n n 
C2 O5 AKG doub 5 n n 
C2 C3 AKG sing 6 n n 
C3 C4 AKG sing 7 n n 
C3 H31 AKG sing 8 n n 
C3 H32 AKG sing 9 n n 
C4 C5 AKG sing 10 n n 
C4 H41 AKG sing 11 n n 
C4 H42 AKG sing 12 n n 
C5 O3 AKG doub 13 n n 
C5 O4 AKG sing 14 n n 
O4 HO4 AKG sing 15 n n 
#
_atom_sites.entry_id                     3THT 
_atom_sites.fract_transf_matrix[1][1]    0.006659 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00279 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013646 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007237 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 401 401 ZN ZN . 
F 3 MN A 1 402 402 MN MN . 
G 4 AKG A 1 403 403 AKG AKG . 
H 2 ZN B 1 401 401 ZN ZN . 
I 3 MN B 1 402 402 MN MN . 
J 4 AKG B 1 403 403 AKG AKG . 
K 2 ZN C 1 401 401 ZN ZN . 
L 3 MN C 1 402 402 MN MN . 
M 4 AKG C 1 403 403 AKG AKG . 
N 2 ZN D 1 401 401 ZN ZN . 
O 3 MN D 1 402 402 MN MN . 
P 4 AKG D 1 403 403 AKG AKG . 
Q 5 HOH A 1 8 8 HOH HOH . 
Q 5 HOH A 2 14 14 HOH HOH . 
Q 5 HOH A 3 15 15 HOH HOH . 
Q 5 HOH A 4 21 21 HOH HOH . 
Q 5 HOH A 5 23 23 HOH HOH . 
Q 5 HOH A 6 370 34 HOH HOH . 
Q 5 HOH A 7 371 38 HOH HOH . 
Q 5 HOH A 8 372 39 HOH HOH . 
Q 5 HOH A 9 373 49 HOH HOH . 
Q 5 HOH A 10 374 53 HOH HOH . 
Q 5 HOH A 11 375 60 HOH HOH . 
Q 5 HOH A 12 376 62 HOH HOH . 
Q 5 HOH A 13 377 63 HOH HOH . 
Q 5 HOH A 14 378 76 HOH HOH . 
Q 5 HOH A 15 379 78 HOH HOH . 
Q 5 HOH A 16 380 80 HOH HOH . 
Q 5 HOH A 17 381 87 HOH HOH . 
Q 5 HOH A 18 382 98 HOH HOH . 
Q 5 HOH A 19 383 99 HOH HOH . 
Q 5 HOH A 20 384 100 HOH HOH . 
R 5 HOH B 1 1 1 HOH HOH . 
R 5 HOH B 2 2 2 HOH HOH . 
R 5 HOH B 3 6 6 HOH HOH . 
R 5 HOH B 4 7 7 HOH HOH . 
R 5 HOH B 5 10 10 HOH HOH . 
R 5 HOH B 6 13 13 HOH HOH . 
R 5 HOH B 7 16 16 HOH HOH . 
R 5 HOH B 8 18 18 HOH HOH . 
R 5 HOH B 9 22 22 HOH HOH . 
R 5 HOH B 10 370 26 HOH HOH . 
R 5 HOH B 11 371 32 HOH HOH . 
R 5 HOH B 12 372 33 HOH HOH . 
R 5 HOH B 13 373 40 HOH HOH . 
R 5 HOH B 14 374 41 HOH HOH . 
R 5 HOH B 15 375 42 HOH HOH . 
R 5 HOH B 16 376 43 HOH HOH . 
R 5 HOH B 17 377 44 HOH HOH . 
R 5 HOH B 18 378 46 HOH HOH . 
R 5 HOH B 19 379 48 HOH HOH . 
R 5 HOH B 20 380 51 HOH HOH . 
R 5 HOH B 21 381 52 HOH HOH . 
R 5 HOH B 22 382 54 HOH HOH . 
R 5 HOH B 23 383 55 HOH HOH . 
R 5 HOH B 24 384 64 HOH HOH . 
R 5 HOH B 25 385 67 HOH HOH . 
R 5 HOH B 26 386 69 HOH HOH . 
R 5 HOH B 27 387 70 HOH HOH . 
R 5 HOH B 28 388 71 HOH HOH . 
R 5 HOH B 29 389 79 HOH HOH . 
R 5 HOH B 30 390 93 HOH HOH . 
R 5 HOH B 31 391 95 HOH HOH . 
S 5 HOH C 1 11 11 HOH HOH . 
S 5 HOH C 2 12 12 HOH HOH . 
S 5 HOH C 3 17 17 HOH HOH . 
S 5 HOH C 4 19 19 HOH HOH . 
S 5 HOH C 5 24 24 HOH HOH . 
S 5 HOH C 6 370 25 HOH HOH . 
S 5 HOH C 7 371 31 HOH HOH . 
S 5 HOH C 8 372 36 HOH HOH . 
S 5 HOH C 9 373 37 HOH HOH . 
S 5 HOH C 10 374 50 HOH HOH . 
S 5 HOH C 11 375 58 HOH HOH . 
S 5 HOH C 12 376 73 HOH HOH . 
S 5 HOH C 13 377 74 HOH HOH . 
S 5 HOH C 14 378 82 HOH HOH . 
S 5 HOH C 15 379 84 HOH HOH . 
S 5 HOH C 16 380 88 HOH HOH . 
S 5 HOH C 17 381 94 HOH HOH . 
S 5 HOH C 18 382 97 HOH HOH . 
T 5 HOH D 1 3 3 HOH HOH . 
T 5 HOH D 2 4 4 HOH HOH . 
T 5 HOH D 3 5 5 HOH HOH . 
T 5 HOH D 4 9 9 HOH HOH . 
T 5 HOH D 5 20 20 HOH HOH . 
T 5 HOH D 6 370 27 HOH HOH . 
T 5 HOH D 7 371 28 HOH HOH . 
T 5 HOH D 8 372 29 HOH HOH . 
T 5 HOH D 9 373 30 HOH HOH . 
T 5 HOH D 10 374 35 HOH HOH . 
T 5 HOH D 11 375 45 HOH HOH . 
T 5 HOH D 12 376 47 HOH HOH . 
T 5 HOH D 13 377 56 HOH HOH . 
T 5 HOH D 14 378 57 HOH HOH . 
T 5 HOH D 15 379 59 HOH HOH . 
T 5 HOH D 16 380 61 HOH HOH . 
T 5 HOH D 17 381 65 HOH HOH . 
T 5 HOH D 18 382 66 HOH HOH . 
T 5 HOH D 19 383 68 HOH HOH . 
T 5 HOH D 20 384 72 HOH HOH . 
T 5 HOH D 21 385 75 HOH HOH . 
T 5 HOH D 22 386 77 HOH HOH . 
T 5 HOH D 23 387 81 HOH HOH . 
T 5 HOH D 24 388 83 HOH HOH . 
T 5 HOH D 25 389 85 HOH HOH . 
T 5 HOH D 26 390 86 HOH HOH . 
T 5 HOH D 27 391 89 HOH HOH . 
T 5 HOH D 28 392 90 HOH HOH . 
T 5 HOH D 29 393 91 HOH HOH . 
T 5 HOH D 30 394 92 HOH HOH . 
T 5 HOH D 31 395 96 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 AKG . . . G 4 -36.166 21.644 40.132 1 51.24 ? C1 AKG 403 A 1 
HETATM 2 O O1 AKG . . . G 4 -36.531 21.862 38.992 1 52.71 ? O1 AKG 403 A 1 
HETATM 3 O O2 AKG . . . G 4 -34.847 21.731 40.419 1 51.69 ? O2 AKG 403 A 1 
HETATM 4 C C2 AKG . . . G 4 -37.171 21.26 41.219 1 49.28 ? C2 AKG 403 A 1 
HETATM 5 O O5 AKG . . . G 4 -37.011 20.206 41.808 1 47.42 ? O5 AKG 403 A 1 
HETATM 6 C C3 AKG . . . G 4 -38.361 22.183 41.55 1 46.93 ? C3 AKG 403 A 1 
HETATM 7 C C4 AKG . . . G 4 -39.153 21.751 42.806 1 46.08 ? C4 AKG 403 A 1 
HETATM 8 C C5 AKG . . . G 4 -40.667 21.852 42.586 1 47.29 ? C5 AKG 403 A 1 
HETATM 9 O O3 AKG . . . G 4 -41.275 21.011 41.958 1 48.06 ? O3 AKG 403 A 1 
HETATM 10 O O4 AKG . . . G 4 -41.355 22.875 43.101 1 47.56 ? O4 AKG 403 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#