data_3TI1 # _model_server_result.job_id gEXhB9-JdUV8PjhBQ9v-xg _model_server_result.datetime_utc '2024-11-24 04:32:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ti1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":299}' # _entry.id 3TI1 # _exptl.entry_id 3TI1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.474 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carbo xamide' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TI1 _cell.length_a 53.56 _cell.length_b 71.94 _cell.length_c 72.46 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TI1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H27 F N4 O2' _chem_comp.formula_weight 398.474 _chem_comp.id B49 _chem_comp.mon_nstd_flag . _chem_comp.name 'N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carbo xamide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SUNITINIB # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C14 B49 sing 70 n n C4 H4 B49 sing 71 n n C4 H4A B49 sing 72 n n C4 H4B B49 sing 73 n n C5 C6 B49 doub 74 n y C5 C15 B49 sing 75 n y C5 H5 B49 sing 76 n n C6 C16 B49 sing 77 n y C6 H6 B49 sing 78 n n C7 C15 B49 doub 79 n y C7 C17 B49 sing 80 n y C7 H7 B49 sing 81 n n C13 C3 B49 sing 82 n n C13 C18 B49 doub 83 n y C13 C19 B49 sing 84 n y C15 F29 B49 sing 85 n n C17 C20 B49 sing 86 n n C17 C16 B49 doub 87 n y C20 C21 B49 sing 88 n n C20 C12 B49 doub 89 z n C21 N24 B49 sing 90 n n C21 O27 B49 doub 91 n n C22 C19 B49 sing 92 n n C22 N25 B49 sing 93 n n C22 O28 B49 doub 94 n n C3 H3 B49 sing 95 n n C3 H3A B49 sing 96 n n C3 H3B B49 sing 97 n n C12 C18 B49 sing 98 n n C12 H12 B49 sing 99 n n C14 C19 B49 doub 100 n y C14 N23 B49 sing 101 n y C16 N24 B49 sing 102 n n C18 N23 B49 sing 103 n y N23 HN23 B49 sing 104 n n N24 HN24 B49 sing 105 n n N25 HN25 B49 sing 106 n n N25 C37 B49 sing 107 n n C37 C38 B49 sing 108 n n C38 N4 B49 sing 109 n n N4 C39 B49 sing 110 n n N4 C40 B49 sing 111 n n C40 C41 B49 sing 112 n n C39 C42 B49 sing 113 n n C37 H14 B49 sing 114 n n C37 H15 B49 sing 115 n n C38 H16 B49 sing 116 n n C38 H17 B49 sing 117 n n C39 H18 B49 sing 118 n n C39 H19 B49 sing 119 n n C40 H20 B49 sing 120 n n C40 H21 B49 sing 121 n n C41 H22 B49 sing 122 n n C41 H23 B49 sing 123 n n C41 H24 B49 sing 124 n n C42 H25 B49 sing 125 n n C42 H26 B49 sing 126 n n C42 H27 B49 sing 127 n n # _atom_sites.entry_id 3TI1 _atom_sites.fract_transf_matrix[1][1] 0.018671 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0139 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013801 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B49 A 1 299 1 B49 B49 . C 3 EDO A 1 300 1 EDO EDO . D 3 EDO A 1 301 2 EDO EDO . E 3 EDO A 1 302 3 EDO EDO . F 3 EDO A 1 303 4 EDO EDO . G 3 EDO A 1 304 5 EDO EDO . H 3 EDO A 1 305 6 EDO EDO . I 3 EDO A 1 306 7 EDO EDO . J 3 EDO A 1 307 8 EDO EDO . K 4 HOH A 1 308 1 HOH HOH . K 4 HOH A 2 309 2 HOH HOH . K 4 HOH A 3 310 3 HOH HOH . K 4 HOH A 4 311 4 HOH HOH . K 4 HOH A 5 312 5 HOH HOH . K 4 HOH A 6 313 6 HOH HOH . K 4 HOH A 7 314 7 HOH HOH . K 4 HOH A 8 315 8 HOH HOH . K 4 HOH A 9 316 9 HOH HOH . K 4 HOH A 10 317 10 HOH HOH . K 4 HOH A 11 318 11 HOH HOH . K 4 HOH A 12 319 12 HOH HOH . K 4 HOH A 13 320 14 HOH HOH . K 4 HOH A 14 321 15 HOH HOH . K 4 HOH A 15 322 16 HOH HOH . K 4 HOH A 16 323 17 HOH HOH . K 4 HOH A 17 324 18 HOH HOH . K 4 HOH A 18 325 19 HOH HOH . K 4 HOH A 19 326 20 HOH HOH . K 4 HOH A 20 327 21 HOH HOH . K 4 HOH A 21 328 22 HOH HOH . K 4 HOH A 22 329 23 HOH HOH . K 4 HOH A 23 330 24 HOH HOH . K 4 HOH A 24 331 25 HOH HOH . K 4 HOH A 25 332 26 HOH HOH . K 4 HOH A 26 333 27 HOH HOH . K 4 HOH A 27 334 28 HOH HOH . K 4 HOH A 28 335 29 HOH HOH . K 4 HOH A 29 336 31 HOH HOH . K 4 HOH A 30 337 33 HOH HOH . K 4 HOH A 31 338 34 HOH HOH . K 4 HOH A 32 339 35 HOH HOH . K 4 HOH A 33 340 36 HOH HOH . K 4 HOH A 34 341 37 HOH HOH . K 4 HOH A 35 342 38 HOH HOH . K 4 HOH A 36 343 41 HOH HOH . K 4 HOH A 37 344 43 HOH HOH . K 4 HOH A 38 345 44 HOH HOH . K 4 HOH A 39 346 45 HOH HOH . K 4 HOH A 40 347 46 HOH HOH . K 4 HOH A 41 348 47 HOH HOH . K 4 HOH A 42 349 48 HOH HOH . K 4 HOH A 43 350 49 HOH HOH . K 4 HOH A 44 351 50 HOH HOH . K 4 HOH A 45 352 51 HOH HOH . K 4 HOH A 46 353 52 HOH HOH . K 4 HOH A 47 354 53 HOH HOH . K 4 HOH A 48 355 54 HOH HOH . K 4 HOH A 49 356 55 HOH HOH . K 4 HOH A 50 357 56 HOH HOH . K 4 HOH A 51 358 57 HOH HOH . K 4 HOH A 52 359 58 HOH HOH . K 4 HOH A 53 360 59 HOH HOH . K 4 HOH A 54 361 60 HOH HOH . K 4 HOH A 55 362 61 HOH HOH . K 4 HOH A 56 363 63 HOH HOH . K 4 HOH A 57 364 64 HOH HOH . K 4 HOH A 58 365 65 HOH HOH . K 4 HOH A 59 366 66 HOH HOH . K 4 HOH A 60 367 67 HOH HOH . K 4 HOH A 61 368 68 HOH HOH . K 4 HOH A 62 369 69 HOH HOH . K 4 HOH A 63 370 70 HOH HOH . K 4 HOH A 64 371 71 HOH HOH . K 4 HOH A 65 372 72 HOH HOH . K 4 HOH A 66 373 73 HOH HOH . K 4 HOH A 67 374 75 HOH HOH . K 4 HOH A 68 375 76 HOH HOH . K 4 HOH A 69 376 78 HOH HOH . K 4 HOH A 70 377 79 HOH HOH . K 4 HOH A 71 378 82 HOH HOH . K 4 HOH A 72 379 84 HOH HOH . K 4 HOH A 73 380 85 HOH HOH . K 4 HOH A 74 381 86 HOH HOH . K 4 HOH A 75 382 87 HOH HOH . K 4 HOH A 76 383 88 HOH HOH . K 4 HOH A 77 384 91 HOH HOH . K 4 HOH A 78 385 92 HOH HOH . K 4 HOH A 79 386 93 HOH HOH . K 4 HOH A 80 387 94 HOH HOH . K 4 HOH A 81 388 96 HOH HOH . K 4 HOH A 82 389 97 HOH HOH . K 4 HOH A 83 390 98 HOH HOH . K 4 HOH A 84 391 99 HOH HOH . K 4 HOH A 85 392 100 HOH HOH . K 4 HOH A 86 393 102 HOH HOH . K 4 HOH A 87 394 103 HOH HOH . K 4 HOH A 88 395 105 HOH HOH . K 4 HOH A 89 396 106 HOH HOH . K 4 HOH A 90 397 107 HOH HOH . K 4 HOH A 91 398 108 HOH HOH . K 4 HOH A 92 399 109 HOH HOH . K 4 HOH A 93 400 110 HOH HOH . K 4 HOH A 94 401 111 HOH HOH . K 4 HOH A 95 402 112 HOH HOH . K 4 HOH A 96 403 113 HOH HOH . K 4 HOH A 97 404 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 B49 . . . B 2 -88.664 -11.737 -83.751 1 31.87 ? C4 B49 299 A 1 HETATM 2 C C5 B49 . . . B 2 -96.379 -7.005 -87.86 1 28.6 ? C5 B49 299 A 1 HETATM 3 C C6 B49 . . . B 2 -95.498 -7.929 -88.451 1 25.34 ? C6 B49 299 A 1 HETATM 4 C C7 B49 . . . B 2 -95.197 -7.255 -85.753 1 33.3 ? C7 B49 299 A 1 HETATM 5 C C13 B49 . . . B 2 -90.925 -8.954 -82.594 1 35.43 ? C13 B49 299 A 1 HETATM 6 C C15 B49 . . . B 2 -96.229 -6.671 -86.511 1 30.79 ? C15 B49 299 A 1 HETATM 7 C C17 B49 . . . B 2 -94.329 -8.18 -86.351 1 29.49 ? C17 B49 299 A 1 HETATM 8 C C20 B49 . . . B 2 -93.205 -8.908 -85.802 1 27.84 ? C20 B49 299 A 1 HETATM 9 C C21 B49 . . . B 2 -92.669 -9.702 -86.832 1 26.17 ? C21 B49 299 A 1 HETATM 10 C C22 B49 . . . B 2 -88.819 -9.66 -81.2 1 37.52 ? C22 B49 299 A 1 HETATM 11 C C3 B49 . . . B 2 -91.417 -7.853 -81.691 1 37.61 ? C3 B49 299 A 1 HETATM 12 C C12 B49 . . . B 2 -92.811 -8.721 -84.322 1 31.34 ? C12 B49 299 A 1 HETATM 13 C C14 B49 . . . B 2 -89.726 -10.657 -83.508 1 34.64 ? C14 B49 299 A 1 HETATM 14 C C16 B49 . . . B 2 -94.452 -8.523 -87.667 1 26.85 ? C16 B49 299 A 1 HETATM 15 C C18 B49 . . . B 2 -91.534 -9.357 -83.792 1 34.31 ? C18 B49 299 A 1 HETATM 16 C C19 B49 . . . B 2 -89.787 -9.748 -82.405 1 36.11 ? C19 B49 299 A 1 HETATM 17 N N23 B49 . . . B 2 -90.791 -10.401 -84.335 1 32.82 ? N23 B49 299 A 1 HETATM 18 N N24 B49 . . . B 2 -93.416 -9.465 -87.955 1 26.35 ? N24 B49 299 A 1 HETATM 19 N N25 B49 . . . B 2 -89.341 -9.45 -79.849 1 36.66 ? N25 B49 299 A 1 HETATM 20 O O27 B49 . . . B 2 -91.59 -10.559 -86.752 1 26.42 ? O27 B49 299 A 1 HETATM 21 O O28 B49 . . . B 2 -87.578 -9.784 -81.378 1 36.3 ? O28 B49 299 A 1 HETATM 22 F F29 B49 . . . B 2 -97.035 -5.814 -85.908 1 28.4 ? F29 B49 299 A 1 HETATM 23 C C37 B49 . . . B 2 -88.441 -9.382 -78.742 1 41.76 ? C37 B49 299 A 1 HETATM 24 C C38 B49 . . . B 2 -88.638 -8.337 -77.67 1 43.5 ? C38 B49 299 A 1 HETATM 25 N N4 B49 . . . B 2 -88.881 -6.944 -78.059 1 42.38 ? N4 B49 299 A 1 HETATM 26 C C39 B49 . . . B 2 -90.105 -6.45 -77.491 1 41.85 ? C39 B49 299 A 1 HETATM 27 C C40 B49 . . . B 2 -87.784 -6.115 -77.68 1 35.07 ? C40 B49 299 A 1 HETATM 28 C C41 B49 . . . B 2 -87.664 -5.705 -76.209 1 41.01 ? C41 B49 299 A 1 HETATM 29 C C42 B49 . . . B 2 -90.897 -7.32 -76.572 1 47.83 ? C42 B49 299 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #