data_3TIF
#
_model_server_result.job_id            nK4TISSLezTRJxMLh9LJkA 
_model_server_result.datetime_utc      '2024-11-30 09:40:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3tif 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":1237}' 
#
_entry.id    3TIF 
#
_exptl.entry_id    3TIF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3TIF 
_cell.length_a            80.649 
_cell.length_b            106.347 
_cell.length_c            117.232 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3TIF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_654 -x+1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 80.649 0 -58.616 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 45 A SER 45 1_555 G NA NA . A NA 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? 
metalc ? metalc2 A OE1 GLN 90 A GLN 90 1_555 G NA NA . A NA 238 1_555 ? A ? ? ? ? ? ? ? ? ? ? 3.059 ? 
metalc ? metalc3 A OE1 GLN 171 A GLN 171 1_555 G NA NA . A NA 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? 
metalc ? metalc4 C O1B ADP . A ADP 236 1_555 G NA NA . A NA 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? 
metalc ? metalc5 D O3 PI . A PI 237 1_555 G NA NA . A NA 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? 
metalc ? metalc6 H O3B ADP . B ADP 1 1_555 K NA NA . B NA 1237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? 
metalc ? metalc7 M O HOH . B HOH 7 1_555 K NA NA . B NA 1237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc8 M O HOH . B HOH 76 1_555 K NA NA . B NA 1237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? 
metalc ? metalc9 B OG SER 45 B SER 1045 1_555 K NA NA . B NA 1237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? 
metalc ? metalc10 B OE1 GLN 90 B GLN 1090 1_555 K NA NA . B NA 1237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? 
metalc ? metalc11 I O3 PI . B PI 1236 1_555 K NA NA . B NA 1237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3TIF 
_atom_sites.fract_transf_matrix[1][1]    0.012399 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009403 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00853 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADP A 1 236 174 ADP ADP . 
D 3 PI A 1 237 1 PI PI . 
E 4 IPA A 1 1600 1600 IPA IPA . 
F 4 IPA A 1 1602 1602 IPA IPA . 
G 5 NA A 1 238 2 NA NA . 
H 2 ADP B 1 1 1 ADP ADP . 
I 3 PI B 1 1236 1 PI PI . 
J 4 IPA B 1 1601 1601 IPA IPA . 
K 5 NA B 1 1237 1 NA NA . 
L 6 HOH A 1 239 3 HOH HOH . 
L 6 HOH A 2 240 4 HOH HOH . 
L 6 HOH A 3 241 5 HOH HOH . 
L 6 HOH A 4 242 8 HOH HOH . 
L 6 HOH A 5 243 13 HOH HOH . 
L 6 HOH A 6 244 14 HOH HOH . 
L 6 HOH A 7 245 15 HOH HOH . 
L 6 HOH A 8 246 18 HOH HOH . 
L 6 HOH A 9 247 21 HOH HOH . 
L 6 HOH A 10 248 22 HOH HOH . 
L 6 HOH A 11 249 23 HOH HOH . 
L 6 HOH A 12 250 24 HOH HOH . 
L 6 HOH A 13 251 25 HOH HOH . 
L 6 HOH A 14 252 28 HOH HOH . 
L 6 HOH A 15 253 29 HOH HOH . 
L 6 HOH A 16 254 31 HOH HOH . 
L 6 HOH A 17 255 32 HOH HOH . 
L 6 HOH A 18 256 33 HOH HOH . 
L 6 HOH A 19 257 36 HOH HOH . 
L 6 HOH A 20 258 42 HOH HOH . 
L 6 HOH A 21 259 43 HOH HOH . 
L 6 HOH A 22 260 45 HOH HOH . 
L 6 HOH A 23 261 46 HOH HOH . 
L 6 HOH A 24 262 48 HOH HOH . 
L 6 HOH A 25 263 49 HOH HOH . 
L 6 HOH A 26 264 50 HOH HOH . 
L 6 HOH A 27 265 53 HOH HOH . 
L 6 HOH A 28 266 54 HOH HOH . 
L 6 HOH A 29 267 56 HOH HOH . 
L 6 HOH A 30 268 58 HOH HOH . 
L 6 HOH A 31 269 59 HOH HOH . 
L 6 HOH A 32 270 61 HOH HOH . 
L 6 HOH A 33 271 62 HOH HOH . 
L 6 HOH A 34 272 64 HOH HOH . 
L 6 HOH A 35 273 65 HOH HOH . 
L 6 HOH A 36 274 66 HOH HOH . 
L 6 HOH A 37 275 67 HOH HOH . 
L 6 HOH A 38 276 71 HOH HOH . 
L 6 HOH A 39 277 72 HOH HOH . 
L 6 HOH A 40 278 73 HOH HOH . 
L 6 HOH A 41 279 75 HOH HOH . 
L 6 HOH A 42 280 77 HOH HOH . 
L 6 HOH A 43 281 78 HOH HOH . 
L 6 HOH A 44 282 80 HOH HOH . 
L 6 HOH A 45 283 82 HOH HOH . 
L 6 HOH A 46 284 84 HOH HOH . 
L 6 HOH A 47 285 85 HOH HOH . 
L 6 HOH A 48 286 90 HOH HOH . 
L 6 HOH A 49 287 91 HOH HOH . 
L 6 HOH A 50 288 92 HOH HOH . 
L 6 HOH A 51 289 93 HOH HOH . 
L 6 HOH A 52 290 94 HOH HOH . 
L 6 HOH A 53 291 95 HOH HOH . 
L 6 HOH A 54 292 96 HOH HOH . 
L 6 HOH A 55 293 97 HOH HOH . 
L 6 HOH A 56 294 98 HOH HOH . 
L 6 HOH A 57 295 101 HOH HOH . 
L 6 HOH A 58 296 103 HOH HOH . 
L 6 HOH A 59 297 104 HOH HOH . 
L 6 HOH A 60 298 105 HOH HOH . 
L 6 HOH A 61 299 106 HOH HOH . 
L 6 HOH A 62 300 113 HOH HOH . 
L 6 HOH A 63 301 117 HOH HOH . 
L 6 HOH A 64 302 118 HOH HOH . 
L 6 HOH A 65 303 120 HOH HOH . 
L 6 HOH A 66 304 123 HOH HOH . 
L 6 HOH A 67 305 127 HOH HOH . 
L 6 HOH A 68 306 128 HOH HOH . 
L 6 HOH A 69 307 130 HOH HOH . 
L 6 HOH A 70 308 135 HOH HOH . 
L 6 HOH A 71 309 137 HOH HOH . 
L 6 HOH A 72 310 138 HOH HOH . 
L 6 HOH A 73 311 140 HOH HOH . 
L 6 HOH A 74 312 141 HOH HOH . 
L 6 HOH A 75 313 145 HOH HOH . 
L 6 HOH A 76 314 147 HOH HOH . 
L 6 HOH A 77 315 149 HOH HOH . 
L 6 HOH A 78 316 155 HOH HOH . 
L 6 HOH A 79 317 157 HOH HOH . 
L 6 HOH A 80 318 160 HOH HOH . 
L 6 HOH A 81 319 161 HOH HOH . 
L 6 HOH A 82 320 163 HOH HOH . 
L 6 HOH A 83 321 166 HOH HOH . 
L 6 HOH A 84 322 168 HOH HOH . 
L 6 HOH A 85 323 169 HOH HOH . 
L 6 HOH A 86 324 171 HOH HOH . 
L 6 HOH A 87 325 172 HOH HOH . 
L 6 HOH A 88 326 173 HOH HOH . 
L 6 HOH A 89 327 177 HOH HOH . 
L 6 HOH A 90 328 180 HOH HOH . 
L 6 HOH A 91 329 181 HOH HOH . 
L 6 HOH A 92 330 182 HOH HOH . 
L 6 HOH A 93 331 183 HOH HOH . 
L 6 HOH A 94 332 184 HOH HOH . 
L 6 HOH A 95 333 185 HOH HOH . 
L 6 HOH A 96 334 188 HOH HOH . 
L 6 HOH A 97 335 191 HOH HOH . 
L 6 HOH A 98 336 196 HOH HOH . 
L 6 HOH A 99 337 197 HOH HOH . 
L 6 HOH A 100 338 198 HOH HOH . 
L 6 HOH A 101 339 201 HOH HOH . 
L 6 HOH A 102 340 204 HOH HOH . 
L 6 HOH A 103 341 208 HOH HOH . 
L 6 HOH A 104 342 210 HOH HOH . 
M 6 HOH B 1 2 2 HOH HOH . 
M 6 HOH B 2 6 6 HOH HOH . 
M 6 HOH B 3 7 7 HOH HOH . 
M 6 HOH B 4 9 9 HOH HOH . 
M 6 HOH B 5 10 10 HOH HOH . 
M 6 HOH B 6 11 11 HOH HOH . 
M 6 HOH B 7 12 12 HOH HOH . 
M 6 HOH B 8 16 16 HOH HOH . 
M 6 HOH B 9 17 17 HOH HOH . 
M 6 HOH B 10 19 19 HOH HOH . 
M 6 HOH B 11 20 20 HOH HOH . 
M 6 HOH B 12 26 26 HOH HOH . 
M 6 HOH B 13 27 27 HOH HOH . 
M 6 HOH B 14 30 30 HOH HOH . 
M 6 HOH B 15 34 34 HOH HOH . 
M 6 HOH B 16 35 35 HOH HOH . 
M 6 HOH B 17 37 37 HOH HOH . 
M 6 HOH B 18 38 38 HOH HOH . 
M 6 HOH B 19 39 39 HOH HOH . 
M 6 HOH B 20 40 40 HOH HOH . 
M 6 HOH B 21 41 41 HOH HOH . 
M 6 HOH B 22 44 44 HOH HOH . 
M 6 HOH B 23 47 47 HOH HOH . 
M 6 HOH B 24 51 51 HOH HOH . 
M 6 HOH B 25 52 52 HOH HOH . 
M 6 HOH B 26 55 55 HOH HOH . 
M 6 HOH B 27 57 57 HOH HOH . 
M 6 HOH B 28 60 60 HOH HOH . 
M 6 HOH B 29 63 63 HOH HOH . 
M 6 HOH B 30 68 68 HOH HOH . 
M 6 HOH B 31 69 69 HOH HOH . 
M 6 HOH B 32 70 70 HOH HOH . 
M 6 HOH B 33 74 74 HOH HOH . 
M 6 HOH B 34 76 76 HOH HOH . 
M 6 HOH B 35 79 79 HOH HOH . 
M 6 HOH B 36 81 81 HOH HOH . 
M 6 HOH B 37 83 83 HOH HOH . 
M 6 HOH B 38 86 86 HOH HOH . 
M 6 HOH B 39 87 87 HOH HOH . 
M 6 HOH B 40 88 88 HOH HOH . 
M 6 HOH B 41 89 89 HOH HOH . 
M 6 HOH B 42 99 99 HOH HOH . 
M 6 HOH B 43 100 100 HOH HOH . 
M 6 HOH B 44 102 102 HOH HOH . 
M 6 HOH B 45 107 107 HOH HOH . 
M 6 HOH B 46 108 108 HOH HOH . 
M 6 HOH B 47 109 109 HOH HOH . 
M 6 HOH B 48 110 110 HOH HOH . 
M 6 HOH B 49 111 111 HOH HOH . 
M 6 HOH B 50 112 112 HOH HOH . 
M 6 HOH B 51 114 114 HOH HOH . 
M 6 HOH B 52 115 115 HOH HOH . 
M 6 HOH B 53 116 116 HOH HOH . 
M 6 HOH B 54 119 119 HOH HOH . 
M 6 HOH B 55 121 121 HOH HOH . 
M 6 HOH B 56 122 122 HOH HOH . 
M 6 HOH B 57 124 124 HOH HOH . 
M 6 HOH B 58 125 125 HOH HOH . 
M 6 HOH B 59 126 126 HOH HOH . 
M 6 HOH B 60 129 129 HOH HOH . 
M 6 HOH B 61 131 131 HOH HOH . 
M 6 HOH B 62 132 132 HOH HOH . 
M 6 HOH B 63 133 133 HOH HOH . 
M 6 HOH B 64 134 134 HOH HOH . 
M 6 HOH B 65 136 136 HOH HOH . 
M 6 HOH B 66 139 139 HOH HOH . 
M 6 HOH B 67 142 142 HOH HOH . 
M 6 HOH B 68 143 143 HOH HOH . 
M 6 HOH B 69 144 144 HOH HOH . 
M 6 HOH B 70 146 146 HOH HOH . 
M 6 HOH B 71 148 148 HOH HOH . 
M 6 HOH B 72 150 150 HOH HOH . 
M 6 HOH B 73 151 151 HOH HOH . 
M 6 HOH B 74 152 152 HOH HOH . 
M 6 HOH B 75 153 153 HOH HOH . 
M 6 HOH B 76 154 154 HOH HOH . 
M 6 HOH B 77 156 156 HOH HOH . 
M 6 HOH B 78 158 158 HOH HOH . 
M 6 HOH B 79 159 159 HOH HOH . 
M 6 HOH B 80 162 162 HOH HOH . 
M 6 HOH B 81 164 164 HOH HOH . 
M 6 HOH B 82 165 165 HOH HOH . 
M 6 HOH B 83 167 167 HOH HOH . 
M 6 HOH B 84 170 170 HOH HOH . 
M 6 HOH B 85 174 174 HOH HOH . 
M 6 HOH B 86 175 175 HOH HOH . 
M 6 HOH B 87 176 176 HOH HOH . 
M 6 HOH B 88 178 178 HOH HOH . 
M 6 HOH B 89 179 179 HOH HOH . 
M 6 HOH B 90 186 186 HOH HOH . 
M 6 HOH B 91 187 187 HOH HOH . 
M 6 HOH B 92 189 189 HOH HOH . 
M 6 HOH B 93 190 190 HOH HOH . 
M 6 HOH B 94 192 192 HOH HOH . 
M 6 HOH B 95 193 193 HOH HOH . 
M 6 HOH B 96 194 194 HOH HOH . 
M 6 HOH B 97 195 195 HOH HOH . 
M 6 HOH B 98 199 199 HOH HOH . 
M 6 HOH B 99 200 200 HOH HOH . 
M 6 HOH B 100 202 202 HOH HOH . 
M 6 HOH B 101 203 203 HOH HOH . 
M 6 HOH B 102 205 205 HOH HOH . 
M 6 HOH B 103 206 206 HOH HOH . 
M 6 HOH B 104 207 207 HOH HOH . 
M 6 HOH B 105 209 209 HOH HOH . 
M 6 HOH B 106 211 211 HOH HOH . 
M 6 HOH B 107 1238 1 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         K 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               31.512 
_atom_site.Cartn_y               26.918 
_atom_site.Cartn_z               -15.512 
_atom_site.occupancy             0.69 
_atom_site.B_iso_or_equiv        29.66 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1237 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           228 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#