data_3TII # _model_server_result.job_id acl00GrB9usZqpFD0PI_WA _model_server_result.datetime_utc '2024-11-28 18:27:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tii # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":700}' # _entry.id 3TII # _exptl.entry_id 3TII _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.11 _cell.angle_gamma 90 _cell.entry_id 3TII _cell.length_a 44.416 _cell.length_b 74.663 _cell.length_c 117.328 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TII _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,L 1 1 B,G,H,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 17 A TYR 14 1_555 D MG MG . A MG 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc2 A O ASN 66 A ASN 63 1_555 D MG MG . A MG 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.882 ? metalc ? metalc3 A OH TYR 312 A TYR 309 1_555 E MG MG . A MG 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc4 E MG MG . A MG 382 1_555 L O HOH . A HOH 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc5 F MG MG . A MG 383 1_555 C O2B ANP . A ANP 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? metalc ? metalc6 F MG MG . A MG 383 1_555 C O3G ANP . A ANP 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc7 F MG MG . A MG 383 1_555 C O2A ANP . A ANP 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc8 B OD2 ASP 11 B ASP 8 1_555 K MG MG . B MG 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc9 B OH TYR 17 B TYR 14 1_555 H MG MG . B MG 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc10 B O ASN 66 B ASN 63 1_555 H MG MG . B MG 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc11 B OH TYR 67 B TYR 64 1_555 K MG MG . B MG 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc12 B OH TYR 312 B TYR 309 1_555 I MG MG . B MG 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc13 B OE1 GLU 334 B GLU 331 1_555 J MG MG . B MG 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc14 J MG MG . B MG 383 1_555 G O2B ANP . B ANP 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc15 J MG MG . B MG 383 1_555 G O2G ANP . B ANP 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc16 J MG MG . B MG 383 1_555 G O2A ANP . B ANP 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc17 K MG MG . B MG 384 1_555 M O HOH . B HOH 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 3TII _atom_sites.fract_transf_matrix[1][1] 0.022514 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000043 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013394 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008523 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 700 700 ANP ATP . D 3 MG A 1 381 2 MG MG2 . E 3 MG A 1 382 5 MG MG2 . F 3 MG A 1 383 7 MG MG2 . G 2 ANP B 1 710 710 ANP ATP . H 3 MG B 1 381 1 MG MG2 . I 3 MG B 1 382 3 MG MG2 . J 3 MG B 1 383 4 MG MG2 . K 3 MG B 1 384 6 MG MG2 . L 4 HOH A 1 384 2 HOH HOH . L 4 HOH A 2 385 3 HOH HOH . L 4 HOH A 3 386 9 HOH HOH . L 4 HOH A 4 387 15 HOH HOH . L 4 HOH A 5 388 16 HOH HOH . L 4 HOH A 6 389 17 HOH HOH . L 4 HOH A 7 390 19 HOH HOH . L 4 HOH A 8 391 20 HOH HOH . L 4 HOH A 9 392 21 HOH HOH . L 4 HOH A 10 393 22 HOH HOH . L 4 HOH A 11 394 23 HOH HOH . L 4 HOH A 12 395 24 HOH HOH . L 4 HOH A 13 396 25 HOH HOH . L 4 HOH A 14 397 33 HOH HOH . L 4 HOH A 15 398 35 HOH HOH . L 4 HOH A 16 399 36 HOH HOH . L 4 HOH A 17 400 37 HOH HOH . M 4 HOH B 1 385 4 HOH HOH . M 4 HOH B 2 386 5 HOH HOH . M 4 HOH B 3 387 10 HOH HOH . M 4 HOH B 4 388 12 HOH HOH . M 4 HOH B 5 389 13 HOH HOH . M 4 HOH B 6 390 14 HOH HOH . M 4 HOH B 7 391 26 HOH HOH . M 4 HOH B 8 392 27 HOH HOH . M 4 HOH B 9 393 28 HOH HOH . M 4 HOH B 10 394 29 HOH HOH . M 4 HOH B 11 395 31 HOH HOH . M 4 HOH B 12 396 32 HOH HOH . M 4 HOH B 13 397 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 2 18.982 -7.755 -5.274 1 107.21 ? PG ANP 700 A 1 HETATM 2 O O1G ANP . . . C 2 19.903 -7.297 -6.386 1 106.68 ? O1G ANP 700 A 1 HETATM 3 O O2G ANP . . . C 2 19.599 -8.828 -4.404 1 107.4 ? O2G ANP 700 A 1 HETATM 4 O O3G ANP . . . C 2 18.573 -6.579 -4.381 1 106.17 ? O3G ANP 700 A 1 HETATM 5 P PB ANP . . . C 2 16.212 -7.989 -6.118 1 107.14 ? PB ANP 700 A 1 HETATM 6 O O1B ANP . . . C 2 15.38 -9.066 -6.737 1 106.61 ? O1B ANP 700 A 1 HETATM 7 O O2B ANP . . . C 2 15.748 -7.716 -4.721 1 104.48 ? O2B ANP 700 A 1 HETATM 8 N N3B ANP . . . C 2 17.62 -8.415 -5.975 1 106.37 ? N3B ANP 700 A 1 HETATM 9 P PA ANP . . . C 2 15.868 -5.183 -7.099 1 99.58 ? PA ANP 700 A 1 HETATM 10 O O1A ANP . . . C 2 14.458 -4.834 -7.421 1 98.11 ? O1A ANP 700 A 1 HETATM 11 O O2A ANP . . . C 2 16.367 -4.681 -5.798 1 99.54 ? O2A ANP 700 A 1 HETATM 12 O O3A ANP . . . C 2 16.083 -6.768 -7.097 1 103.09 ? O3A ANP 700 A 1 HETATM 13 O O5' ANP . . . C 2 16.747 -4.659 -8.353 1 96.94 ? O5' ANP 700 A 1 HETATM 14 C C5' ANP . . . C 2 18.173 -4.848 -8.335 1 89.81 ? C5' ANP 700 A 1 HETATM 15 C C4' ANP . . . C 2 18.759 -3.437 -8.667 1 84.36 ? C4' ANP 700 A 1 HETATM 16 O O4' ANP . . . C 2 18.087 -2.896 -9.812 1 80.66 ? O4' ANP 700 A 1 HETATM 17 C C3' ANP . . . C 2 18.55 -2.365 -7.56 1 82.97 ? C3' ANP 700 A 1 HETATM 18 O O3' ANP . . . C 2 19.599 -2.372 -6.541 1 84.35 ? O3' ANP 700 A 1 HETATM 19 C C2' ANP . . . C 2 18.454 -1.059 -8.358 1 80.41 ? C2' ANP 700 A 1 HETATM 20 O O2' ANP . . . C 2 19.874 -0.631 -8.399 1 80.45 ? O2' ANP 700 A 1 HETATM 21 C C1' ANP . . . C 2 18.059 -1.429 -9.792 1 78.45 ? C1' ANP 700 A 1 HETATM 22 N N9 ANP . . . C 2 16.67 -0.992 -10.097 1 75.62 ? N9 ANP 700 A 1 HETATM 23 C C8 ANP . . . C 2 15.502 -1.638 -9.724 1 74.05 ? C8 ANP 700 A 1 HETATM 24 N N7 ANP . . . C 2 14.402 -1.053 -10.118 1 71.87 ? N7 ANP 700 A 1 HETATM 25 C C5 ANP . . . C 2 14.852 0.057 -10.794 1 71.72 ? C5 ANP 700 A 1 HETATM 26 C C6 ANP . . . C 2 14.188 1.113 -11.475 1 70.65 ? C6 ANP 700 A 1 HETATM 27 N N6 ANP . . . C 2 12.875 1.195 -11.554 1 69.14 ? N6 ANP 700 A 1 HETATM 28 N N1 ANP . . . C 2 14.955 2.08 -12.055 1 70.65 ? N1 ANP 700 A 1 HETATM 29 C C2 ANP . . . C 2 16.299 2.004 -11.977 1 69.92 ? C2 ANP 700 A 1 HETATM 30 N N3 ANP . . . C 2 17.042 1.056 -11.365 1 70.29 ? N3 ANP 700 A 1 HETATM 31 C C4 ANP . . . C 2 16.248 0.107 -10.798 1 72.78 ? C4 ANP 700 A 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 31 #