data_3TIN # _model_server_result.job_id yokeCDwhsx2aKm4hWGNRzw _model_server_result.datetime_utc '2024-11-28 16:10:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tin # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":702}' # _entry.id 3TIN # _exptl.entry_id 3TIN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.83 _cell.angle_gamma 90 _cell.entry_id 3TIN _cell.length_a 116.97 _cell.length_b 75.72 _cell.length_c 44.23 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TIN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 17 A TYR 14 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? metalc ? metalc2 A O ASN 66 A ASN 63 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc3 A OH TYR 312 A TYR 309 1_555 D MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 3TIN _atom_sites.fract_transf_matrix[1][1] 0.008549 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000124 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013207 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022611 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 702 701 ADP ADP . C 3 MG A 1 602 601 MG MG . D 3 MG A 1 603 602 MG MG . E 3 MG A 1 604 603 MG MG . F 4 HOH A 1 502 501 HOH HOH . F 4 HOH A 2 503 502 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 22.641 8.022 17.492 1 162.65 ? PB ADP 702 A 1 HETATM 2 O O1B ADP . . . B 2 22.923 7.584 16.103 1 163.2 ? O1B ADP 702 A 1 HETATM 3 O O2B ADP . . . B 2 21.903 9.455 17.462 1 160.32 ? O2B ADP 702 A 1 HETATM 4 O O3B ADP . . . B 2 24.014 8.159 18.322 1 161.3 ? O3B ADP 702 A 1 HETATM 5 P PA ADP . . . B 2 22.392 5.498 18.257 1 154.18 ? PA ADP 702 A 1 HETATM 6 O O1A ADP . . . B 2 22.654 5.018 16.868 1 151.8 ? O1A ADP 702 A 1 HETATM 7 O O2A ADP . . . B 2 23.781 5.598 19.069 1 152.22 ? O2A ADP 702 A 1 HETATM 8 O O3A ADP . . . B 2 21.668 6.946 18.215 1 157.81 ? O3A ADP 702 A 1 HETATM 9 O O5' ADP . . . B 2 21.398 4.461 19 1 146.82 ? O5' ADP 702 A 1 HETATM 10 C C5' ADP . . . B 2 22.048 3.185 19.059 1 137.5 ? C5' ADP 702 A 1 HETATM 11 C C4' ADP . . . B 2 21.135 2.179 19.767 1 127.56 ? C4' ADP 702 A 1 HETATM 12 O O4' ADP . . . B 2 19.89 2.033 19.025 1 119.68 ? O4' ADP 702 A 1 HETATM 13 C C3' ADP . . . B 2 21.817 0.799 19.857 1 123.45 ? C3' ADP 702 A 1 HETATM 14 O O3' ADP . . . B 2 22.192 0.497 21.206 1 124.7 ? O3' ADP 702 A 1 HETATM 15 C C2' ADP . . . B 2 20.808 -0.214 19.298 1 119.76 ? C2' ADP 702 A 1 HETATM 16 O O2' ADP . . . B 2 20.484 -1.224 20.266 1 116.48 ? O2' ADP 702 A 1 HETATM 17 C C1' ADP . . . B 2 19.566 0.617 18.875 1 113.32 ? C1' ADP 702 A 1 HETATM 18 N N9 ADP . . . B 2 19.224 0.32 17.465 1 99.77 ? N9 ADP 702 A 1 HETATM 19 C C8 ADP . . . B 2 19.676 0.983 16.354 1 97.1 ? C8 ADP 702 A 1 HETATM 20 N N7 ADP . . . B 2 19.178 0.454 15.275 1 90.3 ? N7 ADP 702 A 1 HETATM 21 C C5 ADP . . . B 2 18.377 -0.578 15.614 1 84.41 ? C5 ADP 702 A 1 HETATM 22 C C6 ADP . . . B 2 17.582 -1.512 14.899 1 79.82 ? C6 ADP 702 A 1 HETATM 23 N N6 ADP . . . B 2 17.519 -1.477 13.516 1 80.3 ? N6 ADP 702 A 1 HETATM 24 N N1 ADP . . . B 2 16.89 -2.437 15.592 1 72.43 ? N1 ADP 702 A 1 HETATM 25 C C2 ADP . . . B 2 16.937 -2.495 16.925 1 80.89 ? C2 ADP 702 A 1 HETATM 26 N N3 ADP . . . B 2 17.67 -1.641 17.634 1 84.86 ? N3 ADP 702 A 1 HETATM 27 C C4 ADP . . . B 2 18.395 -0.68 17.029 1 88.49 ? C4 ADP 702 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 378 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #