data_3TK5 # _model_server_result.job_id M2VtLZG161o52GXG4PSj2w _model_server_result.datetime_utc '2024-10-18 16:31:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tk5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":261}' # _entry.id 3TK5 # _exptl.entry_id 3TK5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TK5 _cell.length_a 56.278 _cell.length_b 71.928 _cell.length_c 78.775 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TK5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 48 B CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf6 B SG CYS 5 B CYS 89 1_555 B SG CYS 16 B CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf7 B SG CYS 12 B CYS 96 1_555 B SG CYS 25 B CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 B SG CYS 27 B CYS 111 1_555 B SG CYS 40 B CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc1 F O HOH . A HOH 9 1_555 D CA CA . A CA 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc2 A OD1 ASP 56 A ASP 70 1_555 D CA CA . A CA 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc3 A O ASN 58 A ASN 72 1_555 D CA CA . A CA 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc4 A O GLN 61 A GLN 75 1_555 D CA CA . A CA 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc5 A OE2 GLU 66 A GLU 80 1_555 D CA CA . A CA 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc6 A O TYR 173 A TYR 185 1_555 C CA CA . A CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc7 A O ASP 174 A ASP 185 1_555 C CA CA . A CA 261 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc8 A O ARG 211 A ARG 222 1_555 C CA CA . A CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc9 A O LYS 214 A LYS 224 1_555 C CA CA . A CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc10 C CA CA . A CA 261 1_555 F O HOH . A HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc11 C CA CA . A CA 261 1_555 F O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc12 D CA CA . A CA 262 1_555 F O HOH . A HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3TK5 _atom_sites.fract_transf_matrix[1][1] 0.017769 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013903 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012694 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 261 261 CA CA . D 3 CA A 1 262 262 CA CA . E 4 D1Q A 1 700 700 D1Q D10 . F 5 HOH A 1 2 2 HOH HOH . F 5 HOH A 2 3 3 HOH HOH . F 5 HOH A 3 4 4 HOH HOH . F 5 HOH A 4 5 5 HOH HOH . F 5 HOH A 5 6 6 HOH HOH . F 5 HOH A 6 7 7 HOH HOH . F 5 HOH A 7 9 9 HOH HOH . F 5 HOH A 8 10 10 HOH HOH . F 5 HOH A 9 11 11 HOH HOH . F 5 HOH A 10 12 12 HOH HOH . F 5 HOH A 11 13 13 HOH HOH . F 5 HOH A 12 14 14 HOH HOH . F 5 HOH A 13 15 15 HOH HOH . F 5 HOH A 14 244 244 HOH HOH . F 5 HOH A 15 245 245 HOH HOH . F 5 HOH A 16 246 246 HOH HOH . F 5 HOH A 17 247 247 HOH HOH . F 5 HOH A 18 248 248 HOH HOH . F 5 HOH A 19 249 249 HOH HOH . F 5 HOH A 20 250 250 HOH HOH . F 5 HOH A 21 251 251 HOH HOH . F 5 HOH A 22 252 16 HOH HOH . F 5 HOH A 23 253 17 HOH HOH . F 5 HOH A 24 254 254 HOH HOH . F 5 HOH A 25 255 255 HOH HOH . F 5 HOH A 26 256 18 HOH HOH . F 5 HOH A 27 257 19 HOH HOH . F 5 HOH A 28 258 20 HOH HOH . F 5 HOH A 29 259 22 HOH HOH . F 5 HOH A 30 260 23 HOH HOH . F 5 HOH A 31 263 24 HOH HOH . F 5 HOH A 32 264 25 HOH HOH . F 5 HOH A 33 265 26 HOH HOH . F 5 HOH A 34 266 27 HOH HOH . F 5 HOH A 35 267 28 HOH HOH . F 5 HOH A 36 268 30 HOH HOH . F 5 HOH A 37 269 31 HOH HOH . F 5 HOH A 38 270 32 HOH HOH . F 5 HOH A 39 271 33 HOH HOH . F 5 HOH A 40 272 34 HOH HOH . F 5 HOH A 41 273 35 HOH HOH . F 5 HOH A 42 274 36 HOH HOH . F 5 HOH A 43 275 39 HOH HOH . F 5 HOH A 44 276 40 HOH HOH . F 5 HOH A 45 277 41 HOH HOH . F 5 HOH A 46 278 42 HOH HOH . F 5 HOH A 47 279 44 HOH HOH . F 5 HOH A 48 280 48 HOH HOH . F 5 HOH A 49 281 50 HOH HOH . F 5 HOH A 50 282 51 HOH HOH . F 5 HOH A 51 283 52 HOH HOH . F 5 HOH A 52 284 53 HOH HOH . F 5 HOH A 53 285 54 HOH HOH . F 5 HOH A 54 286 55 HOH HOH . F 5 HOH A 55 287 56 HOH HOH . F 5 HOH A 56 288 57 HOH HOH . F 5 HOH A 57 289 58 HOH HOH . F 5 HOH A 58 290 59 HOH HOH . F 5 HOH A 59 291 60 HOH HOH . F 5 HOH A 60 292 62 HOH HOH . F 5 HOH A 61 293 63 HOH HOH . F 5 HOH A 62 294 64 HOH HOH . F 5 HOH A 63 295 68 HOH HOH . F 5 HOH A 64 296 69 HOH HOH . F 5 HOH A 65 297 70 HOH HOH . F 5 HOH A 66 298 71 HOH HOH . F 5 HOH A 67 299 73 HOH HOH . F 5 HOH A 68 300 74 HOH HOH . F 5 HOH A 69 301 75 HOH HOH . F 5 HOH A 70 302 76 HOH HOH . F 5 HOH A 71 303 78 HOH HOH . F 5 HOH A 72 304 79 HOH HOH . F 5 HOH A 73 305 81 HOH HOH . F 5 HOH A 74 306 82 HOH HOH . F 5 HOH A 75 307 83 HOH HOH . F 5 HOH A 76 308 86 HOH HOH . F 5 HOH A 77 309 87 HOH HOH . F 5 HOH A 78 310 88 HOH HOH . F 5 HOH A 79 311 89 HOH HOH . F 5 HOH A 80 312 93 HOH HOH . F 5 HOH A 81 313 94 HOH HOH . F 5 HOH A 82 314 95 HOH HOH . F 5 HOH A 83 315 96 HOH HOH . F 5 HOH A 84 316 98 HOH HOH . F 5 HOH A 85 317 101 HOH HOH . F 5 HOH A 86 318 104 HOH HOH . F 5 HOH A 87 319 105 HOH HOH . F 5 HOH A 88 320 107 HOH HOH . F 5 HOH A 89 321 108 HOH HOH . F 5 HOH A 90 322 111 HOH HOH . F 5 HOH A 91 323 113 HOH HOH . F 5 HOH A 92 324 114 HOH HOH . F 5 HOH A 93 325 115 HOH HOH . F 5 HOH A 94 326 116 HOH HOH . F 5 HOH A 95 327 117 HOH HOH . F 5 HOH A 96 328 119 HOH HOH . F 5 HOH A 97 329 123 HOH HOH . F 5 HOH A 98 330 126 HOH HOH . F 5 HOH A 99 331 127 HOH HOH . F 5 HOH A 100 332 128 HOH HOH . F 5 HOH A 101 333 129 HOH HOH . F 5 HOH A 102 334 130 HOH HOH . F 5 HOH A 103 335 131 HOH HOH . F 5 HOH A 104 336 132 HOH HOH . F 5 HOH A 105 337 133 HOH HOH . F 5 HOH A 106 338 135 HOH HOH . F 5 HOH A 107 339 137 HOH HOH . F 5 HOH A 108 340 138 HOH HOH . F 5 HOH A 109 341 139 HOH HOH . F 5 HOH A 110 342 142 HOH HOH . F 5 HOH A 111 343 144 HOH HOH . F 5 HOH A 112 344 147 HOH HOH . F 5 HOH A 113 345 150 HOH HOH . F 5 HOH A 114 346 151 HOH HOH . F 5 HOH A 115 347 152 HOH HOH . F 5 HOH A 116 348 154 HOH HOH . F 5 HOH A 117 349 155 HOH HOH . F 5 HOH A 118 350 156 HOH HOH . F 5 HOH A 119 351 157 HOH HOH . F 5 HOH A 120 352 159 HOH HOH . F 5 HOH A 121 353 160 HOH HOH . F 5 HOH A 122 354 161 HOH HOH . F 5 HOH A 123 355 162 HOH HOH . F 5 HOH A 124 356 163 HOH HOH . F 5 HOH A 125 357 164 HOH HOH . F 5 HOH A 126 358 165 HOH HOH . F 5 HOH A 127 359 166 HOH HOH . F 5 HOH A 128 360 167 HOH HOH . F 5 HOH A 129 361 168 HOH HOH . F 5 HOH A 130 362 169 HOH HOH . F 5 HOH A 131 363 171 HOH HOH . F 5 HOH A 132 364 172 HOH HOH . F 5 HOH A 133 365 174 HOH HOH . F 5 HOH A 134 366 175 HOH HOH . F 5 HOH A 135 367 177 HOH HOH . F 5 HOH A 136 368 179 HOH HOH . F 5 HOH A 137 369 180 HOH HOH . F 5 HOH A 138 370 183 HOH HOH . F 5 HOH A 139 371 184 HOH HOH . F 5 HOH A 140 372 185 HOH HOH . F 5 HOH A 141 373 186 HOH HOH . F 5 HOH A 142 374 187 HOH HOH . F 5 HOH A 143 375 188 HOH HOH . F 5 HOH A 144 376 190 HOH HOH . F 5 HOH A 145 377 191 HOH HOH . F 5 HOH A 146 378 192 HOH HOH . F 5 HOH A 147 379 204 HOH HOH . F 5 HOH A 148 380 207 HOH HOH . F 5 HOH A 149 381 208 HOH HOH . F 5 HOH A 150 382 212 HOH HOH . F 5 HOH A 151 383 218 HOH HOH . F 5 HOH A 152 384 220 HOH HOH . F 5 HOH A 153 385 222 HOH HOH . F 5 HOH A 154 386 224 HOH HOH . F 5 HOH A 155 387 227 HOH HOH . F 5 HOH A 156 388 233 HOH HOH . F 5 HOH A 157 389 234 HOH HOH . F 5 HOH A 158 390 236 HOH HOH . F 5 HOH A 159 391 243 HOH HOH . F 5 HOH A 160 392 215 HOH HOH . G 5 HOH B 1 8 8 HOH HOH . G 5 HOH B 2 37 37 HOH HOH . G 5 HOH B 3 45 45 HOH HOH . G 5 HOH B 4 46 46 HOH HOH . G 5 HOH B 5 61 61 HOH HOH . G 5 HOH B 6 65 65 HOH HOH . G 5 HOH B 7 67 67 HOH HOH . G 5 HOH B 8 72 72 HOH HOH . G 5 HOH B 9 77 77 HOH HOH . G 5 HOH B 10 80 80 HOH HOH . G 5 HOH B 11 84 84 HOH HOH . G 5 HOH B 12 139 85 HOH HOH . G 5 HOH B 13 140 140 HOH HOH . G 5 HOH B 14 141 90 HOH HOH . G 5 HOH B 15 142 91 HOH HOH . G 5 HOH B 16 143 143 HOH HOH . G 5 HOH B 17 144 97 HOH HOH . G 5 HOH B 18 145 145 HOH HOH . G 5 HOH B 19 146 99 HOH HOH . G 5 HOH B 20 147 100 HOH HOH . G 5 HOH B 21 148 102 HOH HOH . G 5 HOH B 22 149 103 HOH HOH . G 5 HOH B 23 150 106 HOH HOH . G 5 HOH B 24 151 109 HOH HOH . G 5 HOH B 25 152 112 HOH HOH . G 5 HOH B 26 153 118 HOH HOH . G 5 HOH B 27 154 120 HOH HOH . G 5 HOH B 28 155 121 HOH HOH . G 5 HOH B 29 156 125 HOH HOH . G 5 HOH B 30 157 134 HOH HOH . G 5 HOH B 31 158 136 HOH HOH . G 5 HOH B 32 170 170 HOH HOH . G 5 HOH B 33 173 173 HOH HOH . G 5 HOH B 34 176 176 HOH HOH . G 5 HOH B 35 178 178 HOH HOH . G 5 HOH B 36 181 181 HOH HOH . G 5 HOH B 37 182 182 HOH HOH . G 5 HOH B 38 193 193 HOH HOH . G 5 HOH B 39 194 194 HOH HOH . G 5 HOH B 40 195 195 HOH HOH . G 5 HOH B 41 196 196 HOH HOH . G 5 HOH B 42 198 198 HOH HOH . G 5 HOH B 43 199 199 HOH HOH . G 5 HOH B 44 203 203 HOH HOH . G 5 HOH B 45 211 211 HOH HOH . G 5 HOH B 46 217 217 HOH HOH . G 5 HOH B 47 219 219 HOH HOH . G 5 HOH B 48 231 231 HOH HOH . G 5 HOH B 49 237 237 HOH HOH . G 5 HOH B 50 241 241 HOH HOH . G 5 HOH B 51 242 242 HOH HOH . G 5 HOH B 52 252 252 HOH HOH . G 5 HOH B 53 253 253 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 9.418 _atom_site.Cartn_y 1.259 _atom_site.Cartn_z 33.759 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 61.47 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 261 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #