data_3TKJ # _model_server_result.job_id tsOy5OyZCbttF4iqqShv9g _model_server_result.datetime_utc '2024-12-29 12:39:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tkj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 3TKJ # _exptl.entry_id 3TKJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TKJ _cell.length_a 111.682 _cell.length_b 111.371 _cell.length_c 119.5 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TKJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 66 A LEU 55 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc2 A O GLU 67 A GLU 56 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc3 A O ASP 69 A ASP 58 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc4 A O PHE 72 A PHE 61 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc5 A O ALA 74 A ALA 63 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc6 A O CYS 76 A CYS 65 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc7 B O LEU 66 B LEU 55 1_555 F NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc8 B O GLU 67 B GLU 56 1_555 F NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc9 B O ASP 69 B ASP 58 1_555 F NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc10 B O PHE 72 B PHE 61 1_555 F NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc11 B O ALA 74 B ALA 63 1_555 F NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc12 B O CYS 76 B CYS 65 1_555 F NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3TKJ _atom_sites.fract_transf_matrix[1][1] 0.008954 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008979 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008368 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 401 1 NA NA . D 3 TAM A 1 402 1 TAM TAM . E 4 SO4 A 1 403 1 SO4 SO4 . F 2 NA B 1 401 1 NA NA . G 3 TAM B 1 402 1 TAM TAM . H 4 SO4 B 1 403 2 SO4 SO4 . I 5 HOH A 1 501 5 HOH HOH . I 5 HOH A 2 502 7 HOH HOH . I 5 HOH A 3 503 8 HOH HOH . I 5 HOH A 4 504 12 HOH HOH . I 5 HOH A 5 505 13 HOH HOH . I 5 HOH A 6 506 16 HOH HOH . I 5 HOH A 7 507 17 HOH HOH . I 5 HOH A 8 508 25 HOH HOH . I 5 HOH A 9 509 30 HOH HOH . I 5 HOH A 10 510 32 HOH HOH . I 5 HOH A 11 511 33 HOH HOH . I 5 HOH A 12 512 35 HOH HOH . I 5 HOH A 13 513 36 HOH HOH . I 5 HOH A 14 514 40 HOH HOH . I 5 HOH A 15 515 42 HOH HOH . I 5 HOH A 16 516 43 HOH HOH . I 5 HOH A 17 517 44 HOH HOH . I 5 HOH A 18 518 46 HOH HOH . I 5 HOH A 19 519 47 HOH HOH . I 5 HOH A 20 520 48 HOH HOH . I 5 HOH A 21 521 50 HOH HOH . I 5 HOH A 22 522 54 HOH HOH . I 5 HOH A 23 523 55 HOH HOH . I 5 HOH A 24 524 56 HOH HOH . I 5 HOH A 25 525 57 HOH HOH . I 5 HOH A 26 526 58 HOH HOH . I 5 HOH A 27 527 59 HOH HOH . I 5 HOH A 28 528 60 HOH HOH . I 5 HOH A 29 529 63 HOH HOH . I 5 HOH A 30 530 64 HOH HOH . I 5 HOH A 31 531 66 HOH HOH . I 5 HOH A 32 532 68 HOH HOH . I 5 HOH A 33 533 69 HOH HOH . I 5 HOH A 34 534 71 HOH HOH . I 5 HOH A 35 535 73 HOH HOH . I 5 HOH A 36 536 75 HOH HOH . I 5 HOH A 37 537 76 HOH HOH . I 5 HOH A 38 538 77 HOH HOH . I 5 HOH A 39 539 78 HOH HOH . I 5 HOH A 40 540 79 HOH HOH . I 5 HOH A 41 541 80 HOH HOH . I 5 HOH A 42 542 81 HOH HOH . I 5 HOH A 43 543 82 HOH HOH . I 5 HOH A 44 544 83 HOH HOH . I 5 HOH A 45 545 87 HOH HOH . I 5 HOH A 46 546 88 HOH HOH . I 5 HOH A 47 547 89 HOH HOH . I 5 HOH A 48 548 91 HOH HOH . I 5 HOH A 49 549 94 HOH HOH . I 5 HOH A 50 550 95 HOH HOH . I 5 HOH A 51 551 97 HOH HOH . I 5 HOH A 52 552 103 HOH HOH . I 5 HOH A 53 553 105 HOH HOH . I 5 HOH A 54 554 107 HOH HOH . I 5 HOH A 55 555 108 HOH HOH . I 5 HOH A 56 556 109 HOH HOH . I 5 HOH A 57 557 110 HOH HOH . I 5 HOH A 58 558 111 HOH HOH . I 5 HOH A 59 559 112 HOH HOH . I 5 HOH A 60 560 114 HOH HOH . I 5 HOH A 61 561 117 HOH HOH . I 5 HOH A 62 562 122 HOH HOH . I 5 HOH A 63 563 124 HOH HOH . I 5 HOH A 64 564 128 HOH HOH . I 5 HOH A 65 565 129 HOH HOH . I 5 HOH A 66 566 131 HOH HOH . I 5 HOH A 67 567 132 HOH HOH . I 5 HOH A 68 568 133 HOH HOH . I 5 HOH A 69 569 135 HOH HOH . I 5 HOH A 70 570 136 HOH HOH . I 5 HOH A 71 571 137 HOH HOH . I 5 HOH A 72 572 138 HOH HOH . I 5 HOH A 73 573 139 HOH HOH . I 5 HOH A 74 574 142 HOH HOH . I 5 HOH A 75 575 143 HOH HOH . I 5 HOH A 76 576 144 HOH HOH . I 5 HOH A 77 577 147 HOH HOH . I 5 HOH A 78 578 149 HOH HOH . I 5 HOH A 79 579 150 HOH HOH . I 5 HOH A 80 580 151 HOH HOH . I 5 HOH A 81 581 152 HOH HOH . I 5 HOH A 82 582 159 HOH HOH . I 5 HOH A 83 583 160 HOH HOH . I 5 HOH A 84 584 161 HOH HOH . I 5 HOH A 85 585 162 HOH HOH . I 5 HOH A 86 586 169 HOH HOH . I 5 HOH A 87 587 170 HOH HOH . I 5 HOH A 88 588 172 HOH HOH . I 5 HOH A 89 589 173 HOH HOH . I 5 HOH A 90 590 174 HOH HOH . I 5 HOH A 91 591 176 HOH HOH . I 5 HOH A 92 592 180 HOH HOH . I 5 HOH A 93 593 181 HOH HOH . I 5 HOH A 94 594 183 HOH HOH . I 5 HOH A 95 595 184 HOH HOH . I 5 HOH A 96 596 186 HOH HOH . I 5 HOH A 97 597 188 HOH HOH . I 5 HOH A 98 598 190 HOH HOH . I 5 HOH A 99 599 192 HOH HOH . I 5 HOH A 100 600 193 HOH HOH . I 5 HOH A 101 601 194 HOH HOH . I 5 HOH A 102 602 195 HOH HOH . I 5 HOH A 103 603 198 HOH HOH . I 5 HOH A 104 604 199 HOH HOH . I 5 HOH A 105 605 200 HOH HOH . I 5 HOH A 106 606 203 HOH HOH . I 5 HOH A 107 607 204 HOH HOH . I 5 HOH A 108 608 206 HOH HOH . I 5 HOH A 109 609 211 HOH HOH . I 5 HOH A 110 610 212 HOH HOH . J 5 HOH B 1 501 2 HOH HOH . J 5 HOH B 2 502 3 HOH HOH . J 5 HOH B 3 503 4 HOH HOH . J 5 HOH B 4 504 6 HOH HOH . J 5 HOH B 5 505 9 HOH HOH . J 5 HOH B 6 506 10 HOH HOH . J 5 HOH B 7 507 11 HOH HOH . J 5 HOH B 8 508 14 HOH HOH . J 5 HOH B 9 509 15 HOH HOH . J 5 HOH B 10 510 18 HOH HOH . J 5 HOH B 11 511 19 HOH HOH . J 5 HOH B 12 512 20 HOH HOH . J 5 HOH B 13 513 21 HOH HOH . J 5 HOH B 14 514 22 HOH HOH . J 5 HOH B 15 515 23 HOH HOH . J 5 HOH B 16 516 24 HOH HOH . J 5 HOH B 17 517 26 HOH HOH . J 5 HOH B 18 518 27 HOH HOH . J 5 HOH B 19 519 28 HOH HOH . J 5 HOH B 20 520 29 HOH HOH . J 5 HOH B 21 521 31 HOH HOH . J 5 HOH B 22 522 34 HOH HOH . J 5 HOH B 23 523 37 HOH HOH . J 5 HOH B 24 524 38 HOH HOH . J 5 HOH B 25 525 39 HOH HOH . J 5 HOH B 26 526 41 HOH HOH . J 5 HOH B 27 527 45 HOH HOH . J 5 HOH B 28 528 49 HOH HOH . J 5 HOH B 29 529 51 HOH HOH . J 5 HOH B 30 530 52 HOH HOH . J 5 HOH B 31 531 53 HOH HOH . J 5 HOH B 32 532 61 HOH HOH . J 5 HOH B 33 533 62 HOH HOH . J 5 HOH B 34 534 65 HOH HOH . J 5 HOH B 35 535 67 HOH HOH . J 5 HOH B 36 536 70 HOH HOH . J 5 HOH B 37 537 72 HOH HOH . J 5 HOH B 38 538 74 HOH HOH . J 5 HOH B 39 539 84 HOH HOH . J 5 HOH B 40 540 85 HOH HOH . J 5 HOH B 41 541 86 HOH HOH . J 5 HOH B 42 542 90 HOH HOH . J 5 HOH B 43 543 92 HOH HOH . J 5 HOH B 44 544 93 HOH HOH . J 5 HOH B 45 545 96 HOH HOH . J 5 HOH B 46 546 98 HOH HOH . J 5 HOH B 47 547 99 HOH HOH . J 5 HOH B 48 548 100 HOH HOH . J 5 HOH B 49 549 101 HOH HOH . J 5 HOH B 50 550 102 HOH HOH . J 5 HOH B 51 551 104 HOH HOH . J 5 HOH B 52 552 106 HOH HOH . J 5 HOH B 53 553 113 HOH HOH . J 5 HOH B 54 554 115 HOH HOH . J 5 HOH B 55 555 116 HOH HOH . J 5 HOH B 56 556 118 HOH HOH . J 5 HOH B 57 557 119 HOH HOH . J 5 HOH B 58 558 120 HOH HOH . J 5 HOH B 59 559 121 HOH HOH . J 5 HOH B 60 560 123 HOH HOH . J 5 HOH B 61 561 125 HOH HOH . J 5 HOH B 62 562 126 HOH HOH . J 5 HOH B 63 563 127 HOH HOH . J 5 HOH B 64 564 130 HOH HOH . J 5 HOH B 65 565 134 HOH HOH . J 5 HOH B 66 566 140 HOH HOH . J 5 HOH B 67 567 141 HOH HOH . J 5 HOH B 68 568 145 HOH HOH . J 5 HOH B 69 569 146 HOH HOH . J 5 HOH B 70 570 148 HOH HOH . J 5 HOH B 71 571 153 HOH HOH . J 5 HOH B 72 572 154 HOH HOH . J 5 HOH B 73 573 155 HOH HOH . J 5 HOH B 74 574 156 HOH HOH . J 5 HOH B 75 575 157 HOH HOH . J 5 HOH B 76 576 158 HOH HOH . J 5 HOH B 77 577 163 HOH HOH . J 5 HOH B 78 578 164 HOH HOH . J 5 HOH B 79 579 165 HOH HOH . J 5 HOH B 80 580 166 HOH HOH . J 5 HOH B 81 581 167 HOH HOH . J 5 HOH B 82 582 168 HOH HOH . J 5 HOH B 83 583 171 HOH HOH . J 5 HOH B 84 584 175 HOH HOH . J 5 HOH B 85 585 177 HOH HOH . J 5 HOH B 86 586 178 HOH HOH . J 5 HOH B 87 587 179 HOH HOH . J 5 HOH B 88 588 182 HOH HOH . J 5 HOH B 89 589 185 HOH HOH . J 5 HOH B 90 590 187 HOH HOH . J 5 HOH B 91 591 189 HOH HOH . J 5 HOH B 92 592 191 HOH HOH . J 5 HOH B 93 593 196 HOH HOH . J 5 HOH B 94 594 197 HOH HOH . J 5 HOH B 95 595 201 HOH HOH . J 5 HOH B 96 596 202 HOH HOH . J 5 HOH B 97 597 205 HOH HOH . J 5 HOH B 98 598 207 HOH HOH . J 5 HOH B 99 599 208 HOH HOH . J 5 HOH B 100 600 209 HOH HOH . J 5 HOH B 101 601 210 HOH HOH . J 5 HOH B 102 602 213 HOH HOH . J 5 HOH B 103 603 214 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 43.373 _atom_site.Cartn_y 6.839 _atom_site.Cartn_z 22.007 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.05 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 896 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #