data_3TKL # _model_server_result.job_id YZXWKbWROoB06gZKnahWLw _model_server_result.datetime_utc '2024-11-16 16:06:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tkl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 3TKL # _exptl.entry_id 3TKL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.27 _cell.angle_gamma 90 _cell.entry_id 3TKL _cell.length_a 128.823 _cell.length_b 49.709 _cell.length_c 61.702 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TKL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 30 A SER 25 1_555 C MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc2 A OG1 THR 48 A THR 43 1_555 C MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc3 E O HOH . A HOH 192 1_555 C MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc4 E O HOH . A HOH 194 1_555 C MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc5 C MG MG . A MG 300 1_555 D O2B GTP . A GTP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc6 C MG MG . A MG 300 1_555 D O1G GTP . A GTP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3TKL _atom_sites.fract_transf_matrix[1][1] 0.007763 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001267 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020117 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016421 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 300 300 MG MG . D 4 GTP A 1 301 301 GTP GTP . E 5 HOH A 1 192 1 HOH HOH . E 5 HOH A 2 193 2 HOH HOH . E 5 HOH A 3 194 3 HOH HOH . E 5 HOH A 4 195 6 HOH HOH . E 5 HOH A 5 196 7 HOH HOH . E 5 HOH A 6 197 9 HOH HOH . E 5 HOH A 7 198 10 HOH HOH . E 5 HOH A 8 199 11 HOH HOH . E 5 HOH A 9 200 12 HOH HOH . E 5 HOH A 10 201 14 HOH HOH . E 5 HOH A 11 202 17 HOH HOH . E 5 HOH A 12 203 18 HOH HOH . E 5 HOH A 13 204 19 HOH HOH . E 5 HOH A 14 205 20 HOH HOH . E 5 HOH A 15 206 25 HOH HOH . E 5 HOH A 16 207 26 HOH HOH . E 5 HOH A 17 208 29 HOH HOH . E 5 HOH A 18 209 31 HOH HOH . E 5 HOH A 19 210 33 HOH HOH . E 5 HOH A 20 211 34 HOH HOH . E 5 HOH A 21 212 37 HOH HOH . E 5 HOH A 22 213 38 HOH HOH . E 5 HOH A 23 214 39 HOH HOH . E 5 HOH A 24 215 41 HOH HOH . E 5 HOH A 25 216 42 HOH HOH . E 5 HOH A 26 217 43 HOH HOH . E 5 HOH A 27 218 44 HOH HOH . E 5 HOH A 28 219 45 HOH HOH . E 5 HOH A 29 220 48 HOH HOH . E 5 HOH A 30 221 50 HOH HOH . E 5 HOH A 31 222 54 HOH HOH . E 5 HOH A 32 223 56 HOH HOH . E 5 HOH A 33 224 57 HOH HOH . E 5 HOH A 34 225 58 HOH HOH . E 5 HOH A 35 226 59 HOH HOH . E 5 HOH A 36 227 62 HOH HOH . E 5 HOH A 37 228 65 HOH HOH . E 5 HOH A 38 229 66 HOH HOH . E 5 HOH A 39 230 67 HOH HOH . E 5 HOH A 40 231 73 HOH HOH . E 5 HOH A 41 232 76 HOH HOH . E 5 HOH A 42 233 80 HOH HOH . E 5 HOH A 43 234 81 HOH HOH . E 5 HOH A 44 235 85 HOH HOH . E 5 HOH A 45 236 86 HOH HOH . E 5 HOH A 46 237 87 HOH HOH . E 5 HOH A 47 238 88 HOH HOH . E 5 HOH A 48 239 89 HOH HOH . E 5 HOH A 49 240 92 HOH HOH . E 5 HOH A 50 241 93 HOH HOH . E 5 HOH A 51 242 94 HOH HOH . E 5 HOH A 52 243 95 HOH HOH . E 5 HOH A 53 244 98 HOH HOH . E 5 HOH A 54 245 102 HOH HOH . E 5 HOH A 55 246 103 HOH HOH . E 5 HOH A 56 247 105 HOH HOH . E 5 HOH A 57 248 106 HOH HOH . E 5 HOH A 58 249 108 HOH HOH . F 5 HOH B 1 4 4 HOH HOH . F 5 HOH B 2 5 5 HOH HOH . F 5 HOH B 3 8 8 HOH HOH . F 5 HOH B 4 13 13 HOH HOH . F 5 HOH B 5 15 15 HOH HOH . F 5 HOH B 6 16 16 HOH HOH . F 5 HOH B 7 21 21 HOH HOH . F 5 HOH B 8 22 22 HOH HOH . F 5 HOH B 9 23 23 HOH HOH . F 5 HOH B 10 24 24 HOH HOH . F 5 HOH B 11 27 27 HOH HOH . F 5 HOH B 12 28 28 HOH HOH . F 5 HOH B 13 30 30 HOH HOH . F 5 HOH B 14 32 32 HOH HOH . F 5 HOH B 15 35 35 HOH HOH . F 5 HOH B 16 36 36 HOH HOH . F 5 HOH B 17 40 40 HOH HOH . F 5 HOH B 18 46 46 HOH HOH . F 5 HOH B 19 47 47 HOH HOH . F 5 HOH B 20 49 49 HOH HOH . F 5 HOH B 21 51 51 HOH HOH . F 5 HOH B 22 52 52 HOH HOH . F 5 HOH B 23 53 53 HOH HOH . F 5 HOH B 24 55 55 HOH HOH . F 5 HOH B 25 60 60 HOH HOH . F 5 HOH B 26 61 61 HOH HOH . F 5 HOH B 27 63 63 HOH HOH . F 5 HOH B 28 64 64 HOH HOH . F 5 HOH B 29 68 68 HOH HOH . F 5 HOH B 30 69 69 HOH HOH . F 5 HOH B 31 70 70 HOH HOH . F 5 HOH B 32 71 71 HOH HOH . F 5 HOH B 33 72 72 HOH HOH . F 5 HOH B 34 74 74 HOH HOH . F 5 HOH B 35 75 75 HOH HOH . F 5 HOH B 36 77 77 HOH HOH . F 5 HOH B 37 78 78 HOH HOH . F 5 HOH B 38 79 79 HOH HOH . F 5 HOH B 39 82 82 HOH HOH . F 5 HOH B 40 83 83 HOH HOH . F 5 HOH B 41 84 84 HOH HOH . F 5 HOH B 42 90 90 HOH HOH . F 5 HOH B 43 91 91 HOH HOH . F 5 HOH B 44 96 96 HOH HOH . F 5 HOH B 45 97 97 HOH HOH . F 5 HOH B 46 99 99 HOH HOH . F 5 HOH B 47 100 100 HOH HOH . F 5 HOH B 48 101 101 HOH HOH . F 5 HOH B 49 104 104 HOH HOH . F 5 HOH B 50 107 107 HOH HOH . F 5 HOH B 51 109 109 HOH HOH . F 5 HOH B 52 110 110 HOH HOH . F 5 HOH B 53 111 111 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 12.704 _atom_site.Cartn_y -13.931 _atom_site.Cartn_z -18.107 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.84 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 300 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #