data_3TKL
#
_model_server_result.job_id            OpVa2JIQSaT1Eo1CL2FCnQ 
_model_server_result.datetime_utc      '2024-11-16 16:05:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3tkl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    3TKL 
#
_exptl.entry_id    3TKL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.27 
_cell.angle_gamma         90 
_cell.entry_id            3TKL 
_cell.length_a            128.823 
_cell.length_b            49.709 
_cell.length_c            61.702 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3TKL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 30 A SER 25 1_555 C MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc2 A OG1 THR 48 A THR 43 1_555 C MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc3 E O HOH . A HOH 192 1_555 C MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc4 E O HOH . A HOH 194 1_555 C MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc5 C MG MG . A MG 300 1_555 D O2B GTP . A GTP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc6 C MG MG . A MG 300 1_555 D O1G GTP . A GTP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 129 n n 
PG O2G GTP sing 130 n n 
PG O3G GTP sing 131 n n 
PG O3B GTP sing 132 n n 
O2G HOG2 GTP sing 133 n n 
O3G HOG3 GTP sing 134 n n 
O3B PB GTP sing 135 n n 
PB O1B GTP doub 136 n n 
PB O2B GTP sing 137 n n 
PB O3A GTP sing 138 n n 
O2B HOB2 GTP sing 139 n n 
O3A PA GTP sing 140 n n 
PA O1A GTP doub 141 n n 
PA O2A GTP sing 142 n n 
PA O5' GTP sing 143 n n 
O2A HOA2 GTP sing 144 n n 
O5' C5' GTP sing 145 n n 
C5' C4' GTP sing 146 n n 
C5' H5' GTP sing 147 n n 
C5' "H5''" GTP sing 148 n n 
C4' O4' GTP sing 149 n n 
C4' C3' GTP sing 150 n n 
C4' H4' GTP sing 151 n n 
O4' C1' GTP sing 152 n n 
C3' O3' GTP sing 153 n n 
C3' C2' GTP sing 154 n n 
C3' H3' GTP sing 155 n n 
O3' HO3' GTP sing 156 n n 
C2' O2' GTP sing 157 n n 
C2' C1' GTP sing 158 n n 
C2' H2' GTP sing 159 n n 
O2' HO2' GTP sing 160 n n 
C1' N9 GTP sing 161 n n 
C1' H1' GTP sing 162 n n 
N9 C8 GTP sing 163 n y 
N9 C4 GTP sing 164 n y 
C8 N7 GTP doub 165 n y 
C8 H8 GTP sing 166 n n 
N7 C5 GTP sing 167 n y 
C5 C6 GTP sing 168 n n 
C5 C4 GTP doub 169 n y 
C6 O6 GTP doub 170 n n 
C6 N1 GTP sing 171 n n 
N1 C2 GTP sing 172 n n 
N1 HN1 GTP sing 173 n n 
C2 N2 GTP sing 174 n n 
C2 N3 GTP doub 175 n n 
N2 HN21 GTP sing 176 n n 
N2 HN22 GTP sing 177 n n 
N3 C4 GTP sing 178 n n 
#
_atom_sites.entry_id                     3TKL 
_atom_sites.fract_transf_matrix[1][1]    0.007763 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001267 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020117 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016421 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MG A 1 300 300 MG MG . 
D 4 GTP A 1 301 301 GTP GTP . 
E 5 HOH A 1 192 1 HOH HOH . 
E 5 HOH A 2 193 2 HOH HOH . 
E 5 HOH A 3 194 3 HOH HOH . 
E 5 HOH A 4 195 6 HOH HOH . 
E 5 HOH A 5 196 7 HOH HOH . 
E 5 HOH A 6 197 9 HOH HOH . 
E 5 HOH A 7 198 10 HOH HOH . 
E 5 HOH A 8 199 11 HOH HOH . 
E 5 HOH A 9 200 12 HOH HOH . 
E 5 HOH A 10 201 14 HOH HOH . 
E 5 HOH A 11 202 17 HOH HOH . 
E 5 HOH A 12 203 18 HOH HOH . 
E 5 HOH A 13 204 19 HOH HOH . 
E 5 HOH A 14 205 20 HOH HOH . 
E 5 HOH A 15 206 25 HOH HOH . 
E 5 HOH A 16 207 26 HOH HOH . 
E 5 HOH A 17 208 29 HOH HOH . 
E 5 HOH A 18 209 31 HOH HOH . 
E 5 HOH A 19 210 33 HOH HOH . 
E 5 HOH A 20 211 34 HOH HOH . 
E 5 HOH A 21 212 37 HOH HOH . 
E 5 HOH A 22 213 38 HOH HOH . 
E 5 HOH A 23 214 39 HOH HOH . 
E 5 HOH A 24 215 41 HOH HOH . 
E 5 HOH A 25 216 42 HOH HOH . 
E 5 HOH A 26 217 43 HOH HOH . 
E 5 HOH A 27 218 44 HOH HOH . 
E 5 HOH A 28 219 45 HOH HOH . 
E 5 HOH A 29 220 48 HOH HOH . 
E 5 HOH A 30 221 50 HOH HOH . 
E 5 HOH A 31 222 54 HOH HOH . 
E 5 HOH A 32 223 56 HOH HOH . 
E 5 HOH A 33 224 57 HOH HOH . 
E 5 HOH A 34 225 58 HOH HOH . 
E 5 HOH A 35 226 59 HOH HOH . 
E 5 HOH A 36 227 62 HOH HOH . 
E 5 HOH A 37 228 65 HOH HOH . 
E 5 HOH A 38 229 66 HOH HOH . 
E 5 HOH A 39 230 67 HOH HOH . 
E 5 HOH A 40 231 73 HOH HOH . 
E 5 HOH A 41 232 76 HOH HOH . 
E 5 HOH A 42 233 80 HOH HOH . 
E 5 HOH A 43 234 81 HOH HOH . 
E 5 HOH A 44 235 85 HOH HOH . 
E 5 HOH A 45 236 86 HOH HOH . 
E 5 HOH A 46 237 87 HOH HOH . 
E 5 HOH A 47 238 88 HOH HOH . 
E 5 HOH A 48 239 89 HOH HOH . 
E 5 HOH A 49 240 92 HOH HOH . 
E 5 HOH A 50 241 93 HOH HOH . 
E 5 HOH A 51 242 94 HOH HOH . 
E 5 HOH A 52 243 95 HOH HOH . 
E 5 HOH A 53 244 98 HOH HOH . 
E 5 HOH A 54 245 102 HOH HOH . 
E 5 HOH A 55 246 103 HOH HOH . 
E 5 HOH A 56 247 105 HOH HOH . 
E 5 HOH A 57 248 106 HOH HOH . 
E 5 HOH A 58 249 108 HOH HOH . 
F 5 HOH B 1 4 4 HOH HOH . 
F 5 HOH B 2 5 5 HOH HOH . 
F 5 HOH B 3 8 8 HOH HOH . 
F 5 HOH B 4 13 13 HOH HOH . 
F 5 HOH B 5 15 15 HOH HOH . 
F 5 HOH B 6 16 16 HOH HOH . 
F 5 HOH B 7 21 21 HOH HOH . 
F 5 HOH B 8 22 22 HOH HOH . 
F 5 HOH B 9 23 23 HOH HOH . 
F 5 HOH B 10 24 24 HOH HOH . 
F 5 HOH B 11 27 27 HOH HOH . 
F 5 HOH B 12 28 28 HOH HOH . 
F 5 HOH B 13 30 30 HOH HOH . 
F 5 HOH B 14 32 32 HOH HOH . 
F 5 HOH B 15 35 35 HOH HOH . 
F 5 HOH B 16 36 36 HOH HOH . 
F 5 HOH B 17 40 40 HOH HOH . 
F 5 HOH B 18 46 46 HOH HOH . 
F 5 HOH B 19 47 47 HOH HOH . 
F 5 HOH B 20 49 49 HOH HOH . 
F 5 HOH B 21 51 51 HOH HOH . 
F 5 HOH B 22 52 52 HOH HOH . 
F 5 HOH B 23 53 53 HOH HOH . 
F 5 HOH B 24 55 55 HOH HOH . 
F 5 HOH B 25 60 60 HOH HOH . 
F 5 HOH B 26 61 61 HOH HOH . 
F 5 HOH B 27 63 63 HOH HOH . 
F 5 HOH B 28 64 64 HOH HOH . 
F 5 HOH B 29 68 68 HOH HOH . 
F 5 HOH B 30 69 69 HOH HOH . 
F 5 HOH B 31 70 70 HOH HOH . 
F 5 HOH B 32 71 71 HOH HOH . 
F 5 HOH B 33 72 72 HOH HOH . 
F 5 HOH B 34 74 74 HOH HOH . 
F 5 HOH B 35 75 75 HOH HOH . 
F 5 HOH B 36 77 77 HOH HOH . 
F 5 HOH B 37 78 78 HOH HOH . 
F 5 HOH B 38 79 79 HOH HOH . 
F 5 HOH B 39 82 82 HOH HOH . 
F 5 HOH B 40 83 83 HOH HOH . 
F 5 HOH B 41 84 84 HOH HOH . 
F 5 HOH B 42 90 90 HOH HOH . 
F 5 HOH B 43 91 91 HOH HOH . 
F 5 HOH B 44 96 96 HOH HOH . 
F 5 HOH B 45 97 97 HOH HOH . 
F 5 HOH B 46 99 99 HOH HOH . 
F 5 HOH B 47 100 100 HOH HOH . 
F 5 HOH B 48 101 101 HOH HOH . 
F 5 HOH B 49 104 104 HOH HOH . 
F 5 HOH B 50 107 107 HOH HOH . 
F 5 HOH B 51 109 109 HOH HOH . 
F 5 HOH B 52 110 110 HOH HOH . 
F 5 HOH B 53 111 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . D 4 10.927 -11.417 -19.154 1 21.01 ? PG GTP 301 A 1 
HETATM 2 O O1G GTP . . . D 4 11.308 -12.36 -18.013 1 23.39 ? O1G GTP 301 A 1 
HETATM 3 O O2G GTP . . . D 4 11.931 -10.259 -19.074 1 23.05 ? O2G GTP 301 A 1 
HETATM 4 O O3G GTP . . . D 4 9.512 -10.955 -18.974 1 20.8 ? O3G GTP 301 A 1 
HETATM 5 O O3B GTP . . . D 4 11.06 -12.155 -20.601 1 23.16 ? O3B GTP 301 A 1 
HETATM 6 P PB GTP . . . D 4 12.213 -12.977 -21.185 1 15.77 ? PB GTP 301 A 1 
HETATM 7 O O1B GTP . . . D 4 13.121 -12.097 -21.991 1 19.1 ? O1B GTP 301 A 1 
HETATM 8 O O2B GTP . . . D 4 12.962 -13.748 -20.164 1 18.99 ? O2B GTP 301 A 1 
HETATM 9 O O3A GTP . . . D 4 11.522 -13.997 -22.246 1 19.74 ? O3A GTP 301 A 1 
HETATM 10 P PA GTP . . . D 4 11.55 -15.557 -22.05 1 18.77 ? PA GTP 301 A 1 
HETATM 11 O O1A GTP . . . D 4 13.04 -16.001 -22.089 1 18.11 ? O1A GTP 301 A 1 
HETATM 12 O O2A GTP . . . D 4 10.782 -15.982 -20.8 1 18.76 ? O2A GTP 301 A 1 
HETATM 13 O O5' GTP . . . D 4 10.863 -16.091 -23.346 1 20.19 ? O5' GTP 301 A 1 
HETATM 14 C C5' GTP . . . D 4 9.755 -15.501 -23.827 1 22.08 ? C5' GTP 301 A 1 
HETATM 15 C C4' GTP . . . D 4 8.97 -16.312 -24.748 1 22.42 ? C4' GTP 301 A 1 
HETATM 16 O O4' GTP . . . D 4 9.535 -16.17 -26.073 1 22.91 ? O4' GTP 301 A 1 
HETATM 17 C C3' GTP . . . D 4 9.111 -17.753 -24.41 1 22.91 ? C3' GTP 301 A 1 
HETATM 18 O O3' GTP . . . D 4 8.024 -18.207 -23.682 1 22.28 ? O3' GTP 301 A 1 
HETATM 19 C C2' GTP . . . D 4 9.134 -18.429 -25.701 1 23.14 ? C2' GTP 301 A 1 
HETATM 20 O O2' GTP . . . D 4 7.86 -18.749 -26.086 1 33.56 ? O2' GTP 301 A 1 
HETATM 21 C C1' GTP . . . D 4 9.628 -17.433 -26.674 1 24.28 ? C1' GTP 301 A 1 
HETATM 22 N N9 GTP . . . D 4 10.958 -17.722 -27.14 1 19.43 ? N9 GTP 301 A 1 
HETATM 23 C C8 GTP . . . D 4 12.094 -17.588 -26.514 1 18.71 ? C8 GTP 301 A 1 
HETATM 24 N N7 GTP . . . D 4 13.071 -17.935 -27.176 1 18.64 ? N7 GTP 301 A 1 
HETATM 25 C C5 GTP . . . D 4 12.73 -18.379 -28.378 1 22.86 ? C5 GTP 301 A 1 
HETATM 26 C C6 GTP . . . D 4 13.292 -18.878 -29.529 1 19.03 ? C6 GTP 301 A 1 
HETATM 27 O O6 GTP . . . D 4 14.691 -19.038 -29.642 1 20.1 ? O6 GTP 301 A 1 
HETATM 28 N N1 GTP . . . D 4 12.519 -19.233 -30.58 1 23.93 ? N1 GTP 301 A 1 
HETATM 29 C C2 GTP . . . D 4 11.165 -19.102 -30.558 1 20.65 ? C2 GTP 301 A 1 
HETATM 30 N N2 GTP . . . D 4 10.408 -19.474 -31.653 1 18.94 ? N2 GTP 301 A 1 
HETATM 31 N N3 GTP . . . D 4 10.57 -18.626 -29.471 1 21.51 ? N3 GTP 301 A 1 
HETATM 32 C C4 GTP . . . D 4 11.271 -18.273 -28.402 1 18.61 ? C4 GTP 301 A 1 
#
_model_server_stats.io_time_ms              46 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           32 
#