data_3TKW # _model_server_result.job_id NNth9anE25NVdiYIireY0Q _model_server_result.datetime_utc '2024-11-24 10:28:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tkw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 3TKW # _exptl.entry_id 3TKW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TKW _cell.length_a 59.317 _cell.length_b 86.223 _cell.length_c 45.951 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TKW _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 64 A ASP 60 1_555 D NA NA . A NA 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc2 D NA NA . A NA 611 1_555 J O HOH . A HOH 1027 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc3 D NA NA . A NA 611 1_555 J O HOH . A HOH 1054 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc4 D NA NA . A NA 611 1_555 J O HOH . A HOH 1062 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc5 D NA NA . A NA 611 1_555 J O HOH . A HOH 1078 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc6 D NA NA . A NA 611 1_555 J O HOH . A HOH 1080 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 207 n n C1 C2 GOL sing 208 n n C1 H11 GOL sing 209 n n C1 H12 GOL sing 210 n n O1 HO1 GOL sing 211 n n C2 O2 GOL sing 212 n n C2 C3 GOL sing 213 n n C2 H2 GOL sing 214 n n O2 HO2 GOL sing 215 n n C3 O3 GOL sing 216 n n C3 H31 GOL sing 217 n n C3 H32 GOL sing 218 n n O3 HO3 GOL sing 219 n n # _atom_sites.entry_id 3TKW _atom_sites.fract_transf_matrix[1][1] 0.016859 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011598 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021762 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 601 601 CL CL . D 3 NA A 1 611 611 NA NA . E 4 017 B 1 401 401 017 017 . F 5 GOL B 1 501 501 GOL GOL . G 5 GOL B 1 502 502 GOL GOL . H 2 CL B 1 602 602 CL CL . I 2 CL B 1 603 603 CL CL . J 6 HOH A 1 1001 1001 HOH HOH . J 6 HOH A 2 1004 1004 HOH HOH . J 6 HOH A 3 1009 1009 HOH HOH . J 6 HOH A 4 1010 1010 HOH HOH . J 6 HOH A 5 1011 1011 HOH HOH . J 6 HOH A 6 1012 1012 HOH HOH . J 6 HOH A 7 1013 1013 HOH HOH . J 6 HOH A 8 1015 1015 HOH HOH . J 6 HOH A 9 1017 1017 HOH HOH . J 6 HOH A 10 1018 1018 HOH HOH . J 6 HOH A 11 1022 1022 HOH HOH . J 6 HOH A 12 1025 1025 HOH HOH . J 6 HOH A 13 1027 1027 HOH HOH . J 6 HOH A 14 1028 1028 HOH HOH . J 6 HOH A 15 1030 1030 HOH HOH . J 6 HOH A 16 1031 1031 HOH HOH . J 6 HOH A 17 1033 1033 HOH HOH . J 6 HOH A 18 1035 1035 HOH HOH . J 6 HOH A 19 1038 1038 HOH HOH . J 6 HOH A 20 1041 1041 HOH HOH . J 6 HOH A 21 1043 1043 HOH HOH . J 6 HOH A 22 1047 1047 HOH HOH . J 6 HOH A 23 1050 1050 HOH HOH . J 6 HOH A 24 1054 1054 HOH HOH . J 6 HOH A 25 1056 1056 HOH HOH . J 6 HOH A 26 1057 1057 HOH HOH . J 6 HOH A 27 1061 1061 HOH HOH . J 6 HOH A 28 1062 1062 HOH HOH . J 6 HOH A 29 1063 1063 HOH HOH . J 6 HOH A 30 1064 1064 HOH HOH . J 6 HOH A 31 1065 1065 HOH HOH . J 6 HOH A 32 1066 1066 HOH HOH . J 6 HOH A 33 1070 1070 HOH HOH . J 6 HOH A 34 1075 1075 HOH HOH . J 6 HOH A 35 1077 1077 HOH HOH . J 6 HOH A 36 1078 1078 HOH HOH . J 6 HOH A 37 1080 1080 HOH HOH . J 6 HOH A 38 1082 1082 HOH HOH . J 6 HOH A 39 1083 1083 HOH HOH . J 6 HOH A 40 1084 1084 HOH HOH . J 6 HOH A 41 1087 1087 HOH HOH . J 6 HOH A 42 1089 1089 HOH HOH . J 6 HOH A 43 1090 1090 HOH HOH . J 6 HOH A 44 1092 1092 HOH HOH . J 6 HOH A 45 1099 1099 HOH HOH . J 6 HOH A 46 1103 1103 HOH HOH . J 6 HOH A 47 1104 1104 HOH HOH . J 6 HOH A 48 1106 1106 HOH HOH . J 6 HOH A 49 1109 1109 HOH HOH . J 6 HOH A 50 1111 1111 HOH HOH . J 6 HOH A 51 1112 1112 HOH HOH . J 6 HOH A 52 1113 1113 HOH HOH . J 6 HOH A 53 1114 1114 HOH HOH . J 6 HOH A 54 1117 1117 HOH HOH . J 6 HOH A 55 1120 1120 HOH HOH . J 6 HOH A 56 1122 1122 HOH HOH . J 6 HOH A 57 1124 1124 HOH HOH . J 6 HOH A 58 1126 1126 HOH HOH . J 6 HOH A 59 1128 1128 HOH HOH . J 6 HOH A 60 1133 1133 HOH HOH . K 6 HOH B 1 1002 1002 HOH HOH . K 6 HOH B 2 1003 1003 HOH HOH . K 6 HOH B 3 1005 1005 HOH HOH . K 6 HOH B 4 1006 1006 HOH HOH . K 6 HOH B 5 1007 1007 HOH HOH . K 6 HOH B 6 1008 1008 HOH HOH . K 6 HOH B 7 1014 1014 HOH HOH . K 6 HOH B 8 1016 1016 HOH HOH . K 6 HOH B 9 1019 1019 HOH HOH . K 6 HOH B 10 1020 1020 HOH HOH . K 6 HOH B 11 1021 1021 HOH HOH . K 6 HOH B 12 1023 1023 HOH HOH . K 6 HOH B 13 1024 1024 HOH HOH . K 6 HOH B 14 1026 1026 HOH HOH . K 6 HOH B 15 1029 1029 HOH HOH . K 6 HOH B 16 1032 1032 HOH HOH . K 6 HOH B 17 1034 1034 HOH HOH . K 6 HOH B 18 1036 1036 HOH HOH . K 6 HOH B 19 1037 1037 HOH HOH . K 6 HOH B 20 1039 1039 HOH HOH . K 6 HOH B 21 1040 1040 HOH HOH . K 6 HOH B 22 1042 1042 HOH HOH . K 6 HOH B 23 1044 1044 HOH HOH . K 6 HOH B 24 1045 1045 HOH HOH . K 6 HOH B 25 1046 1046 HOH HOH . K 6 HOH B 26 1048 1048 HOH HOH . K 6 HOH B 27 1049 1049 HOH HOH . K 6 HOH B 28 1051 1051 HOH HOH . K 6 HOH B 29 1052 1052 HOH HOH . K 6 HOH B 30 1053 1053 HOH HOH . K 6 HOH B 31 1055 1055 HOH HOH . K 6 HOH B 32 1058 1058 HOH HOH . K 6 HOH B 33 1059 1059 HOH HOH . K 6 HOH B 34 1060 1060 HOH HOH . K 6 HOH B 35 1067 1067 HOH HOH . K 6 HOH B 36 1068 1068 HOH HOH . K 6 HOH B 37 1069 1069 HOH HOH . K 6 HOH B 38 1071 1071 HOH HOH . K 6 HOH B 39 1072 1072 HOH HOH . K 6 HOH B 40 1073 1073 HOH HOH . K 6 HOH B 41 1074 1074 HOH HOH . K 6 HOH B 42 1076 1076 HOH HOH . K 6 HOH B 43 1079 1079 HOH HOH . K 6 HOH B 44 1081 1081 HOH HOH . K 6 HOH B 45 1085 1085 HOH HOH . K 6 HOH B 46 1086 1086 HOH HOH . K 6 HOH B 47 1088 1088 HOH HOH . K 6 HOH B 48 1091 1091 HOH HOH . K 6 HOH B 49 1093 1093 HOH HOH . K 6 HOH B 50 1094 1094 HOH HOH . K 6 HOH B 51 1095 1095 HOH HOH . K 6 HOH B 52 1096 1096 HOH HOH . K 6 HOH B 53 1097 1097 HOH HOH . K 6 HOH B 54 1098 1098 HOH HOH . K 6 HOH B 55 1100 1100 HOH HOH . K 6 HOH B 56 1101 1101 HOH HOH . K 6 HOH B 57 1102 1102 HOH HOH . K 6 HOH B 58 1105 1105 HOH HOH . K 6 HOH B 59 1107 1107 HOH HOH . K 6 HOH B 60 1108 1108 HOH HOH . K 6 HOH B 61 1110 1110 HOH HOH . K 6 HOH B 62 1115 1115 HOH HOH . K 6 HOH B 63 1116 1116 HOH HOH . K 6 HOH B 64 1118 1118 HOH HOH . K 6 HOH B 65 1119 1119 HOH HOH . K 6 HOH B 66 1121 1121 HOH HOH . K 6 HOH B 67 1123 1123 HOH HOH . K 6 HOH B 68 1125 1125 HOH HOH . K 6 HOH B 69 1127 1127 HOH HOH . K 6 HOH B 70 1129 1129 HOH HOH . K 6 HOH B 71 1130 1130 HOH HOH . K 6 HOH B 72 1131 1131 HOH HOH . K 6 HOH B 73 1132 1132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 -15.015 17.06 -39.78 1 41.88 ? C1 GOL 501 B 1 HETATM 2 O O1 GOL . . . F 5 -16.244 16.35 -39.58 1 43.58 ? O1 GOL 501 B 1 HETATM 3 C C2 GOL . . . F 5 -14.269 16.173 -40.794 1 40.45 ? C2 GOL 501 B 1 HETATM 4 O O2 GOL . . . F 5 -15.178 15.86 -41.851 1 44.24 ? O2 GOL 501 B 1 HETATM 5 C C3 GOL . . . F 5 -13.974 14.848 -40.049 1 39.1 ? C3 GOL 501 B 1 HETATM 6 O O3 GOL . . . F 5 -13.643 13.93 -41.06 1 39.42 ? O3 GOL 501 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 6 #