data_3TKY
#
_model_server_result.job_id            Z7lu1gsauTo5ZGSdi1KJog 
_model_server_result.datetime_utc      '2024-12-12 15:11:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3tky 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":370}' 
#
_entry.id    3TKY 
#
_exptl.entry_id    3TKY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.92 
_cell.angle_gamma         90 
_cell.entry_id            3TKY 
_cell.length_a            65.855 
_cell.length_b            152.16 
_cell.length_c            68.181 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3TKY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N 1 1 
C,D,I,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 302 n n 
N HN1 SAH sing 303 n n 
N HN2 SAH sing 304 n n 
CA CB SAH sing 305 n n 
CA C SAH sing 306 n n 
CA HA SAH sing 307 n n 
CB CG SAH sing 308 n n 
CB HB1 SAH sing 309 n n 
CB HB2 SAH sing 310 n n 
CG SD SAH sing 311 n n 
CG HG1 SAH sing 312 n n 
CG HG2 SAH sing 313 n n 
SD C5' SAH sing 314 n n 
C O SAH doub 315 n n 
C OXT SAH sing 316 n n 
OXT HXT SAH sing 317 n n 
C5' C4' SAH sing 318 n n 
C5' "H5'1" SAH sing 319 n n 
C5' "H5'2" SAH sing 320 n n 
C4' O4' SAH sing 321 n n 
C4' C3' SAH sing 322 n n 
C4' H4' SAH sing 323 n n 
O4' C1' SAH sing 324 n n 
C3' O3' SAH sing 325 n n 
C3' C2' SAH sing 326 n n 
C3' H3' SAH sing 327 n n 
O3' HO3' SAH sing 328 n n 
C2' O2' SAH sing 329 n n 
C2' C1' SAH sing 330 n n 
C2' H2' SAH sing 331 n n 
O2' HO2' SAH sing 332 n n 
C1' N9 SAH sing 333 n n 
C1' H1' SAH sing 334 n n 
N9 C8 SAH sing 335 n y 
N9 C4 SAH sing 336 n y 
C8 N7 SAH doub 337 n y 
C8 H8 SAH sing 338 n n 
N7 C5 SAH sing 339 n y 
C5 C6 SAH sing 340 n y 
C5 C4 SAH doub 341 n y 
C6 N6 SAH sing 342 n n 
C6 N1 SAH doub 343 n y 
N6 HN61 SAH sing 344 n n 
N6 HN62 SAH sing 345 n n 
N1 C2 SAH sing 346 n y 
C2 N3 SAH doub 347 n y 
C2 H2 SAH sing 348 n n 
N3 C4 SAH sing 349 n y 
#
_atom_sites.entry_id                     3TKY 
_atom_sites.fract_transf_matrix[1][1]    0.015185 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001307 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006572 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014721 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 N7I A 1 369 369 N7I N7I . 
F 3 SAH A 1 370 370 SAH SAH . 
G 2 N7I B 1 369 369 N7I N7I . 
H 3 SAH B 1 370 370 SAH SAH . 
I 2 N7I C 1 369 369 N7I N7I . 
J 3 SAH C 1 370 370 SAH SAH . 
K 2 N7I D 1 369 369 N7I N7I . 
L 3 SAH D 1 370 370 SAH SAH . 
M 4 HOH A 1 372 372 HOH HOH . 
M 4 HOH A 2 373 373 HOH HOH . 
M 4 HOH A 3 374 374 HOH HOH . 
M 4 HOH A 4 375 375 HOH HOH . 
M 4 HOH A 5 376 376 HOH HOH . 
M 4 HOH A 6 377 377 HOH HOH . 
M 4 HOH A 7 378 378 HOH HOH . 
M 4 HOH A 8 379 379 HOH HOH . 
M 4 HOH A 9 380 380 HOH HOH . 
M 4 HOH A 10 381 381 HOH HOH . 
M 4 HOH A 11 382 382 HOH HOH . 
M 4 HOH A 12 383 383 HOH HOH . 
M 4 HOH A 13 384 384 HOH HOH . 
M 4 HOH A 14 385 385 HOH HOH . 
M 4 HOH A 15 386 386 HOH HOH . 
M 4 HOH A 16 387 387 HOH HOH . 
M 4 HOH A 17 388 388 HOH HOH . 
M 4 HOH A 18 389 389 HOH HOH . 
M 4 HOH A 19 390 390 HOH HOH . 
M 4 HOH A 20 391 391 HOH HOH . 
M 4 HOH A 21 392 392 HOH HOH . 
M 4 HOH A 22 393 393 HOH HOH . 
M 4 HOH A 23 394 394 HOH HOH . 
M 4 HOH A 24 396 396 HOH HOH . 
M 4 HOH A 25 397 397 HOH HOH . 
M 4 HOH A 26 398 398 HOH HOH . 
M 4 HOH A 27 399 399 HOH HOH . 
M 4 HOH A 28 400 400 HOH HOH . 
M 4 HOH A 29 401 401 HOH HOH . 
M 4 HOH A 30 402 402 HOH HOH . 
M 4 HOH A 31 403 403 HOH HOH . 
M 4 HOH A 32 404 404 HOH HOH . 
M 4 HOH A 33 406 406 HOH HOH . 
M 4 HOH A 34 408 408 HOH HOH . 
M 4 HOH A 35 409 409 HOH HOH . 
N 4 HOH B 1 371 371 HOH HOH . 
N 4 HOH B 2 372 372 HOH HOH . 
N 4 HOH B 3 373 373 HOH HOH . 
N 4 HOH B 4 374 374 HOH HOH . 
N 4 HOH B 5 375 375 HOH HOH . 
N 4 HOH B 6 376 376 HOH HOH . 
N 4 HOH B 7 377 377 HOH HOH . 
N 4 HOH B 8 378 378 HOH HOH . 
N 4 HOH B 9 379 379 HOH HOH . 
N 4 HOH B 10 380 380 HOH HOH . 
N 4 HOH B 11 381 381 HOH HOH . 
N 4 HOH B 12 382 382 HOH HOH . 
N 4 HOH B 13 383 383 HOH HOH . 
N 4 HOH B 14 384 384 HOH HOH . 
N 4 HOH B 15 385 385 HOH HOH . 
N 4 HOH B 16 386 386 HOH HOH . 
N 4 HOH B 17 387 387 HOH HOH . 
N 4 HOH B 18 388 388 HOH HOH . 
N 4 HOH B 19 389 389 HOH HOH . 
N 4 HOH B 20 390 390 HOH HOH . 
N 4 HOH B 21 391 391 HOH HOH . 
N 4 HOH B 22 392 392 HOH HOH . 
N 4 HOH B 23 393 393 HOH HOH . 
N 4 HOH B 24 394 394 HOH HOH . 
N 4 HOH B 25 395 395 HOH HOH . 
N 4 HOH B 26 396 396 HOH HOH . 
N 4 HOH B 27 397 397 HOH HOH . 
N 4 HOH B 28 398 398 HOH HOH . 
N 4 HOH B 29 399 399 HOH HOH . 
N 4 HOH B 30 400 400 HOH HOH . 
N 4 HOH B 31 401 401 HOH HOH . 
N 4 HOH B 32 402 402 HOH HOH . 
N 4 HOH B 33 404 404 HOH HOH . 
N 4 HOH B 34 405 405 HOH HOH . 
N 4 HOH B 35 406 406 HOH HOH . 
N 4 HOH B 36 408 408 HOH HOH . 
N 4 HOH B 37 409 409 HOH HOH . 
N 4 HOH B 38 411 411 HOH HOH . 
N 4 HOH B 39 412 412 HOH HOH . 
N 4 HOH B 40 413 413 HOH HOH . 
N 4 HOH B 41 414 414 HOH HOH . 
N 4 HOH B 42 415 415 HOH HOH . 
N 4 HOH B 43 416 416 HOH HOH . 
N 4 HOH B 44 417 417 HOH HOH . 
N 4 HOH B 45 418 418 HOH HOH . 
N 4 HOH B 46 419 419 HOH HOH . 
O 4 HOH C 1 371 371 HOH HOH . 
O 4 HOH C 2 372 372 HOH HOH . 
O 4 HOH C 3 373 373 HOH HOH . 
O 4 HOH C 4 374 374 HOH HOH . 
O 4 HOH C 5 375 375 HOH HOH . 
O 4 HOH C 6 376 376 HOH HOH . 
O 4 HOH C 7 377 377 HOH HOH . 
O 4 HOH C 8 378 378 HOH HOH . 
O 4 HOH C 9 379 379 HOH HOH . 
O 4 HOH C 10 380 380 HOH HOH . 
O 4 HOH C 11 381 381 HOH HOH . 
O 4 HOH C 12 382 382 HOH HOH . 
O 4 HOH C 13 383 383 HOH HOH . 
O 4 HOH C 14 384 384 HOH HOH . 
O 4 HOH C 15 385 385 HOH HOH . 
O 4 HOH C 16 386 386 HOH HOH . 
O 4 HOH C 17 387 387 HOH HOH . 
O 4 HOH C 18 388 388 HOH HOH . 
O 4 HOH C 19 389 389 HOH HOH . 
O 4 HOH C 20 390 390 HOH HOH . 
O 4 HOH C 21 391 391 HOH HOH . 
O 4 HOH C 22 392 392 HOH HOH . 
O 4 HOH C 23 393 393 HOH HOH . 
O 4 HOH C 24 394 394 HOH HOH . 
O 4 HOH C 25 395 395 HOH HOH . 
O 4 HOH C 26 396 396 HOH HOH . 
O 4 HOH C 27 397 397 HOH HOH . 
O 4 HOH C 28 398 398 HOH HOH . 
O 4 HOH C 29 399 399 HOH HOH . 
O 4 HOH C 30 400 400 HOH HOH . 
O 4 HOH C 31 402 402 HOH HOH . 
O 4 HOH C 32 403 403 HOH HOH . 
O 4 HOH C 33 404 404 HOH HOH . 
O 4 HOH C 34 405 405 HOH HOH . 
O 4 HOH C 35 406 406 HOH HOH . 
O 4 HOH C 36 407 407 HOH HOH . 
O 4 HOH C 37 408 408 HOH HOH . 
O 4 HOH C 38 409 409 HOH HOH . 
O 4 HOH C 39 410 410 HOH HOH . 
O 4 HOH C 40 411 411 HOH HOH . 
O 4 HOH C 41 412 412 HOH HOH . 
O 4 HOH C 42 413 413 HOH HOH . 
O 4 HOH C 43 414 414 HOH HOH . 
O 4 HOH C 44 415 415 HOH HOH . 
O 4 HOH C 45 416 416 HOH HOH . 
O 4 HOH C 46 417 417 HOH HOH . 
O 4 HOH C 47 418 418 HOH HOH . 
O 4 HOH C 48 419 419 HOH HOH . 
O 4 HOH C 49 420 420 HOH HOH . 
O 4 HOH C 50 421 421 HOH HOH . 
P 4 HOH D 1 371 371 HOH HOH . 
P 4 HOH D 2 372 372 HOH HOH . 
P 4 HOH D 3 373 373 HOH HOH . 
P 4 HOH D 4 374 374 HOH HOH . 
P 4 HOH D 5 375 375 HOH HOH . 
P 4 HOH D 6 376 376 HOH HOH . 
P 4 HOH D 7 377 377 HOH HOH . 
P 4 HOH D 8 378 378 HOH HOH . 
P 4 HOH D 9 379 379 HOH HOH . 
P 4 HOH D 10 380 380 HOH HOH . 
P 4 HOH D 11 381 381 HOH HOH . 
P 4 HOH D 12 382 382 HOH HOH . 
P 4 HOH D 13 383 383 HOH HOH . 
P 4 HOH D 14 384 384 HOH HOH . 
P 4 HOH D 15 386 386 HOH HOH . 
P 4 HOH D 16 387 387 HOH HOH . 
P 4 HOH D 17 388 388 HOH HOH . 
P 4 HOH D 18 389 389 HOH HOH . 
P 4 HOH D 19 390 390 HOH HOH . 
P 4 HOH D 20 391 391 HOH HOH . 
P 4 HOH D 21 392 392 HOH HOH . 
P 4 HOH D 22 395 395 HOH HOH . 
P 4 HOH D 23 396 396 HOH HOH . 
P 4 HOH D 24 397 397 HOH HOH . 
P 4 HOH D 25 398 398 HOH HOH . 
P 4 HOH D 26 399 399 HOH HOH . 
P 4 HOH D 27 400 400 HOH HOH . 
P 4 HOH D 28 401 401 HOH HOH . 
P 4 HOH D 29 402 402 HOH HOH . 
P 4 HOH D 30 403 403 HOH HOH . 
P 4 HOH D 31 404 404 HOH HOH . 
P 4 HOH D 32 405 405 HOH HOH . 
P 4 HOH D 33 406 406 HOH HOH . 
P 4 HOH D 34 407 407 HOH HOH . 
P 4 HOH D 35 408 408 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . L 3 7.902 -38.153 -3.58 1 28.77 ? N SAH 370 D 1 
HETATM 2 C CA SAH . . . L 3 8.956 -39.149 -3.232 1 29.53 ? CA SAH 370 D 1 
HETATM 3 C CB SAH . . . L 3 8.454 -40.587 -3.025 1 28.45 ? CB SAH 370 D 1 
HETATM 4 C CG SAH . . . L 3 9.324 -41.118 -1.897 1 26.54 ? CG SAH 370 D 1 
HETATM 5 S SD SAH . . . L 3 8.691 -42.533 -1.089 1 20.86 ? SD SAH 370 D 1 
HETATM 6 C C SAH . . . L 3 9.917 -39.246 -4.354 1 30.59 ? C SAH 370 D 1 
HETATM 7 O O SAH . . . L 3 9.532 -39.182 -5.52 1 32.53 ? O SAH 370 D 1 
HETATM 8 O OXT SAH . . . L 3 11.11 -39.407 -4.155 1 30.96 ? OXT SAH 370 D 1 
HETATM 9 C C5' SAH . . . L 3 10.042 -43.614 -1.274 1 22.83 ? C5' SAH 370 D 1 
HETATM 10 C C4' SAH . . . L 3 10.126 -44.117 -2.709 1 21.8 ? C4' SAH 370 D 1 
HETATM 11 O O4' SAH . . . L 3 11.302 -44.939 -2.839 1 21.08 ? O4' SAH 370 D 1 
HETATM 12 C C3' SAH . . . L 3 8.932 -45.002 -3.073 1 22.48 ? C3' SAH 370 D 1 
HETATM 13 O O3' SAH . . . L 3 8.326 -44.46 -4.259 1 24.2 ? O3' SAH 370 D 1 
HETATM 14 C C2' SAH . . . L 3 9.528 -46.405 -3.286 1 21.3 ? C2' SAH 370 D 1 
HETATM 15 O O2' SAH . . . L 3 8.854 -47.111 -4.335 1 18.88 ? O2' SAH 370 D 1 
HETATM 16 C C1' SAH . . . L 3 10.994 -46.12 -3.597 1 18.52 ? C1' SAH 370 D 1 
HETATM 17 N N9 SAH . . . L 3 11.913 -47.218 -3.289 1 16.83 ? N9 SAH 370 D 1 
HETATM 18 C C8 SAH . . . L 3 11.962 -47.885 -2.129 1 18.78 ? C8 SAH 370 D 1 
HETATM 19 N N7 SAH . . . L 3 12.89 -48.863 -2.143 1 18.5 ? N7 SAH 370 D 1 
HETATM 20 C C5 SAH . . . L 3 13.486 -48.813 -3.344 1 18.42 ? C5 SAH 370 D 1 
HETATM 21 C C6 SAH . . . L 3 14.556 -49.591 -4.011 1 17.07 ? C6 SAH 370 D 1 
HETATM 22 N N6 SAH . . . L 3 15.175 -50.581 -3.33 1 16.84 ? N6 SAH 370 D 1 
HETATM 23 N N1 SAH . . . L 3 14.878 -49.27 -5.293 1 16.89 ? N1 SAH 370 D 1 
HETATM 24 C C2 SAH . . . L 3 14.234 -48.264 -5.937 1 16.83 ? C2 SAH 370 D 1 
HETATM 25 N N3 SAH . . . L 3 13.229 -47.532 -5.389 1 17.06 ? N3 SAH 370 D 1 
HETATM 26 C C4 SAH . . . L 3 12.83 -47.733 -4.104 1 17.95 ? C4 SAH 370 D 1 
#
_model_server_stats.io_time_ms              76 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           26 
#