data_3TL1 # _model_server_result.job_id U_gzXudNiNTkoXpvf4QLGg _model_server_result.datetime_utc '2024-12-01 21:38:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tl1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":160}' # _entry.id 3TL1 # _exptl.entry_id 3TL1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 258.226 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6,7,9-trihydroxy-3-methyl-1H-benzo[g]isochromen-1-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.03 _cell.angle_gamma 90 _cell.entry_id 3TL1 _cell.length_a 64.517 _cell.length_b 40.488 _cell.length_c 66.806 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TL1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C14 H10 O5' _chem_comp.formula_weight 258.226 _chem_comp.id JRO _chem_comp.mon_nstd_flag . _chem_comp.name 6,7,9-trihydroxy-3-methyl-1H-benzo[g]isochromen-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAK CAA JRO sing 173 n n CAA HAA JRO sing 174 n n CAA HAAA JRO sing 175 n n CAA HAAB JRO sing 176 n n OAB CAO JRO doub 177 n n CAL OAC JRO sing 178 n n OAC HOAC JRO sing 179 n n OAD CAM JRO sing 180 n n OAD HOAD JRO sing 181 n n CAN OAE JRO sing 182 n n OAE HOAE JRO sing 183 n n CAM CAF JRO doub 184 n y CAF CAL JRO sing 185 n y CAF HAF JRO sing 186 n n CAP CAG JRO sing 187 n n CAK CAG JRO doub 188 n n CAG HAG JRO sing 189 n n CAR CAH JRO doub 190 n y CAP CAH JRO sing 191 n y CAH HAH JRO sing 192 n n CAI CAQ JRO doub 193 n y CAI CAS JRO sing 194 n y CAI HAI JRO sing 195 n n CAO OAJ JRO sing 196 n n OAJ CAK JRO sing 197 n n CAL CAN JRO doub 198 n y CAM CAQ JRO sing 199 n y CAR CAN JRO sing 200 n y CAO CAS JRO sing 201 n n CAS CAP JRO doub 202 n y CAQ CAR JRO sing 203 n y # _atom_sites.entry_id 3TL1 _atom_sites.fract_transf_matrix[1][1] 0.0155 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003303 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024699 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015305 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 JRO A 1 160 1 JRO JRO . D 3 GOL A 1 161 1 GOL GOL . E 3 GOL A 1 162 1 GOL GOL . F 2 JRO B 1 160 1 JRO JRO . G 3 GOL B 1 161 1 GOL GOL . H 4 HOH A 1 163 2 HOH HOH . H 4 HOH A 2 164 5 HOH HOH . H 4 HOH A 3 165 165 HOH HOH . H 4 HOH A 4 166 9 HOH HOH . H 4 HOH A 5 167 17 HOH HOH . H 4 HOH A 6 168 20 HOH HOH . H 4 HOH A 7 169 169 HOH HOH . H 4 HOH A 8 170 23 HOH HOH . H 4 HOH A 9 171 24 HOH HOH . H 4 HOH A 10 172 26 HOH HOH . H 4 HOH A 11 173 31 HOH HOH . H 4 HOH A 12 174 174 HOH HOH . H 4 HOH A 13 175 175 HOH HOH . H 4 HOH A 14 176 32 HOH HOH . H 4 HOH A 15 177 33 HOH HOH . H 4 HOH A 16 178 36 HOH HOH . H 4 HOH A 17 179 39 HOH HOH . H 4 HOH A 18 180 40 HOH HOH . H 4 HOH A 19 181 41 HOH HOH . H 4 HOH A 20 182 43 HOH HOH . H 4 HOH A 21 183 44 HOH HOH . H 4 HOH A 22 184 184 HOH HOH . H 4 HOH A 23 185 45 HOH HOH . H 4 HOH A 24 186 48 HOH HOH . H 4 HOH A 25 187 187 HOH HOH . H 4 HOH A 26 188 52 HOH HOH . H 4 HOH A 27 189 53 HOH HOH . H 4 HOH A 28 190 54 HOH HOH . H 4 HOH A 29 191 55 HOH HOH . H 4 HOH A 30 192 57 HOH HOH . H 4 HOH A 31 193 59 HOH HOH . H 4 HOH A 32 194 61 HOH HOH . H 4 HOH A 33 195 63 HOH HOH . H 4 HOH A 34 196 69 HOH HOH . H 4 HOH A 35 197 197 HOH HOH . H 4 HOH A 36 198 198 HOH HOH . H 4 HOH A 37 199 199 HOH HOH . H 4 HOH A 38 200 70 HOH HOH . H 4 HOH A 39 201 71 HOH HOH . H 4 HOH A 40 202 202 HOH HOH . H 4 HOH A 41 203 73 HOH HOH . H 4 HOH A 42 204 77 HOH HOH . H 4 HOH A 43 205 205 HOH HOH . H 4 HOH A 44 206 78 HOH HOH . H 4 HOH A 45 207 79 HOH HOH . H 4 HOH A 46 208 80 HOH HOH . H 4 HOH A 47 209 81 HOH HOH . H 4 HOH A 48 210 210 HOH HOH . H 4 HOH A 49 211 83 HOH HOH . H 4 HOH A 50 212 85 HOH HOH . H 4 HOH A 51 213 213 HOH HOH . H 4 HOH A 52 214 87 HOH HOH . H 4 HOH A 53 215 89 HOH HOH . H 4 HOH A 54 216 216 HOH HOH . H 4 HOH A 55 217 91 HOH HOH . H 4 HOH A 56 218 94 HOH HOH . H 4 HOH A 57 219 95 HOH HOH . H 4 HOH A 58 220 100 HOH HOH . H 4 HOH A 59 221 101 HOH HOH . H 4 HOH A 60 222 106 HOH HOH . H 4 HOH A 61 223 107 HOH HOH . H 4 HOH A 62 224 114 HOH HOH . H 4 HOH A 63 225 115 HOH HOH . H 4 HOH A 64 226 117 HOH HOH . H 4 HOH A 65 227 119 HOH HOH . H 4 HOH A 66 228 120 HOH HOH . H 4 HOH A 67 229 125 HOH HOH . H 4 HOH A 68 230 126 HOH HOH . H 4 HOH A 69 231 127 HOH HOH . H 4 HOH A 70 232 131 HOH HOH . H 4 HOH A 71 233 132 HOH HOH . H 4 HOH A 72 234 134 HOH HOH . H 4 HOH A 73 235 135 HOH HOH . H 4 HOH A 74 236 137 HOH HOH . H 4 HOH A 75 237 138 HOH HOH . H 4 HOH A 76 238 141 HOH HOH . H 4 HOH A 77 239 142 HOH HOH . H 4 HOH A 78 240 144 HOH HOH . H 4 HOH A 79 241 146 HOH HOH . H 4 HOH A 80 242 150 HOH HOH . H 4 HOH A 81 243 151 HOH HOH . H 4 HOH A 82 244 154 HOH HOH . H 4 HOH A 83 245 156 HOH HOH . H 4 HOH A 84 246 157 HOH HOH . H 4 HOH A 85 247 160 HOH HOH . H 4 HOH A 86 248 162 HOH HOH . I 4 HOH B 1 162 1 HOH HOH . I 4 HOH B 2 163 3 HOH HOH . I 4 HOH B 3 164 164 HOH HOH . I 4 HOH B 4 165 4 HOH HOH . I 4 HOH B 5 166 8 HOH HOH . I 4 HOH B 6 167 167 HOH HOH . I 4 HOH B 7 168 168 HOH HOH . I 4 HOH B 8 169 10 HOH HOH . I 4 HOH B 9 170 170 HOH HOH . I 4 HOH B 10 171 171 HOH HOH . I 4 HOH B 11 172 12 HOH HOH . I 4 HOH B 12 173 173 HOH HOH . I 4 HOH B 13 174 13 HOH HOH . I 4 HOH B 14 175 15 HOH HOH . I 4 HOH B 15 176 16 HOH HOH . I 4 HOH B 16 177 18 HOH HOH . I 4 HOH B 17 178 178 HOH HOH . I 4 HOH B 18 179 179 HOH HOH . I 4 HOH B 19 180 21 HOH HOH . I 4 HOH B 20 181 181 HOH HOH . I 4 HOH B 21 182 182 HOH HOH . I 4 HOH B 22 183 22 HOH HOH . I 4 HOH B 23 184 25 HOH HOH . I 4 HOH B 24 185 27 HOH HOH . I 4 HOH B 25 186 186 HOH HOH . I 4 HOH B 26 187 28 HOH HOH . I 4 HOH B 27 188 188 HOH HOH . I 4 HOH B 28 189 29 HOH HOH . I 4 HOH B 29 190 190 HOH HOH . I 4 HOH B 30 191 30 HOH HOH . I 4 HOH B 31 192 34 HOH HOH . I 4 HOH B 32 193 37 HOH HOH . I 4 HOH B 33 194 38 HOH HOH . I 4 HOH B 34 195 195 HOH HOH . I 4 HOH B 35 196 42 HOH HOH . I 4 HOH B 36 197 46 HOH HOH . I 4 HOH B 37 198 50 HOH HOH . I 4 HOH B 38 199 51 HOH HOH . I 4 HOH B 39 200 200 HOH HOH . I 4 HOH B 40 201 201 HOH HOH . I 4 HOH B 41 202 56 HOH HOH . I 4 HOH B 42 203 58 HOH HOH . I 4 HOH B 43 204 60 HOH HOH . I 4 HOH B 44 205 62 HOH HOH . I 4 HOH B 45 206 64 HOH HOH . I 4 HOH B 46 207 66 HOH HOH . I 4 HOH B 47 208 208 HOH HOH . I 4 HOH B 48 209 209 HOH HOH . I 4 HOH B 49 210 67 HOH HOH . I 4 HOH B 50 211 211 HOH HOH . I 4 HOH B 51 212 68 HOH HOH . I 4 HOH B 52 213 86 HOH HOH . I 4 HOH B 53 214 88 HOH HOH . I 4 HOH B 54 215 215 HOH HOH . I 4 HOH B 55 216 90 HOH HOH . I 4 HOH B 56 217 217 HOH HOH . I 4 HOH B 57 218 93 HOH HOH . I 4 HOH B 58 219 96 HOH HOH . I 4 HOH B 59 220 99 HOH HOH . I 4 HOH B 60 221 103 HOH HOH . I 4 HOH B 61 222 104 HOH HOH . I 4 HOH B 62 223 108 HOH HOH . I 4 HOH B 63 224 109 HOH HOH . I 4 HOH B 64 225 110 HOH HOH . I 4 HOH B 65 226 111 HOH HOH . I 4 HOH B 66 227 113 HOH HOH . I 4 HOH B 67 228 121 HOH HOH . I 4 HOH B 68 229 128 HOH HOH . I 4 HOH B 69 230 129 HOH HOH . I 4 HOH B 70 231 130 HOH HOH . I 4 HOH B 71 232 133 HOH HOH . I 4 HOH B 72 233 140 HOH HOH . I 4 HOH B 73 234 143 HOH HOH . I 4 HOH B 74 235 145 HOH HOH . I 4 HOH B 75 236 148 HOH HOH . I 4 HOH B 76 237 149 HOH HOH . I 4 HOH B 77 238 152 HOH HOH . I 4 HOH B 78 239 153 HOH HOH . I 4 HOH B 79 240 158 HOH HOH . I 4 HOH B 80 241 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA JRO . . . F 2 -7.738 -16.697 -4.834 1 25.18 ? CAA JRO 160 B 1 HETATM 2 O OAB JRO . . . F 2 -6.672 -17.318 -9.38 1 23.25 ? OAB JRO 160 B 1 HETATM 3 O OAC JRO . . . F 2 -4.513 -25.362 -8.056 1 23.39 ? OAC JRO 160 B 1 HETATM 4 O OAD JRO . . . F 2 -5.011 -21.731 -11.076 1 25.72 ? OAD JRO 160 B 1 HETATM 5 O OAE JRO . . . F 2 -5.366 -23.758 -6.032 1 24.63 ? OAE JRO 160 B 1 HETATM 6 C CAF JRO . . . F 2 -4.773 -23.55 -9.605 1 24.51 ? CAF JRO 160 B 1 HETATM 7 C CAG JRO . . . F 2 -6.913 -18.942 -5.669 1 24.86 ? CAG JRO 160 B 1 HETATM 8 C CAH JRO . . . F 2 -6.108 -21.078 -6.459 1 23.47 ? CAH JRO 160 B 1 HETATM 9 C CAI JRO . . . F 2 -5.925 -20.06 -9.042 1 23.95 ? CAI JRO 160 B 1 HETATM 10 O OAJ JRO . . . F 2 -7.169 -17.115 -7.215 1 24.7 ? OAJ JRO 160 B 1 HETATM 11 C CAK JRO . . . F 2 -7.266 -17.623 -5.938 1 25.18 ? CAK JRO 160 B 1 HETATM 12 C CAL JRO . . . F 2 -4.886 -24.067 -8.302 1 24.71 ? CAL JRO 160 B 1 HETATM 13 C CAM JRO . . . F 2 -5.124 -22.222 -9.826 1 24.62 ? CAM JRO 160 B 1 HETATM 14 C CAN JRO . . . F 2 -5.308 -23.237 -7.269 1 24.56 ? CAN JRO 160 B 1 HETATM 15 C CAO JRO . . . F 2 -6.749 -17.885 -8.266 1 24.17 ? CAO JRO 160 B 1 HETATM 16 C CAP JRO . . . F 2 -6.477 -19.756 -6.718 1 24.29 ? CAP JRO 160 B 1 HETATM 17 C CAQ JRO . . . F 2 -5.571 -21.386 -8.787 1 24.36 ? CAQ JRO 160 B 1 HETATM 18 C CAR JRO . . . F 2 -5.665 -21.896 -7.49 1 23.89 ? CAR JRO 160 B 1 HETATM 19 C CAS JRO . . . F 2 -6.369 -19.227 -8.02 1 24.27 ? CAS JRO 160 B 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 19 #