data_3TL5 # _model_server_result.job_id EDRWx1G5DdJ2yCLyjpcEbQ _model_server_result.datetime_utc '2024-11-21 17:50:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tl5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3TL5 # _exptl.entry_id 3TL5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 498.601 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-1-(4-{[2-(2-aminopyrimidin-5-yl)-7-methyl-4-(morpholin-4-yl)thieno[3,2-d]pyrimidin-6-yl]methyl}piperazin-1-yl)-2-hydroxypropan-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.77 _cell.angle_gamma 90 _cell.entry_id 3TL5 _cell.length_a 140.865 _cell.length_b 67.012 _cell.length_c 105.812 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TL5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H30 N8 O3 S' _chem_comp.formula_weight 498.601 _chem_comp.id 980 _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-1-(4-{[2-(2-aminopyrimidin-5-yl)-7-methyl-4-(morpholin-4-yl)thieno[3,2-d]pyrimidin-6-yl]methyl}piperazin-1-yl)-2-hydroxypropan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 980 sing 1 n n C1 H1 980 sing 2 n n C1 H1A 980 sing 3 n n C1 H1B 980 sing 4 n n C2 C3 980 doub 5 n y C2 C6 980 sing 6 n y C24 C3 980 sing 7 n n C3 S4 980 sing 8 n y C5 S4 980 sing 9 n y C6 C5 980 doub 10 n y C5 C10 980 sing 11 n y N7 C6 980 sing 12 n y N7 C8 980 doub 13 n y C17 C8 980 sing 14 n n C8 N9 980 sing 15 n y N9 C10 980 doub 16 n y C10 N11 980 sing 17 n n C12 N11 980 sing 18 n n N11 C16 980 sing 19 n n C12 C13 980 sing 20 n n C12 H12 980 sing 21 n n C12 H12A 980 sing 22 n n C13 O14 980 sing 23 n n C13 H13 980 sing 24 n n C13 H13A 980 sing 25 n n O14 C15 980 sing 26 n n C16 C15 980 sing 27 n n C15 H15 980 sing 28 n n C15 H15A 980 sing 29 n n C16 H16 980 sing 30 n n C16 H16A 980 sing 31 n n C22 C17 980 doub 32 n y C17 C18 980 sing 33 n y N19 C18 980 doub 34 n y C18 H18 980 sing 35 n n C20 N19 980 sing 36 n y N21 C20 980 doub 37 n y N23 C20 980 sing 38 n n N21 C22 980 sing 39 n y C22 H22 980 sing 40 n n N23 HN23 980 sing 41 n n N23 HN2A 980 sing 42 n n N25 C24 980 sing 43 n n C24 H24 980 sing 44 n n C24 H24A 980 sing 45 n n C30 N25 980 sing 46 n n C26 N25 980 sing 47 n n C27 C26 980 sing 48 n n C26 H26 980 sing 49 n n C26 H26A 980 sing 50 n n N28 C27 980 sing 51 n n C27 H27 980 sing 52 n n C27 H27A 980 sing 53 n n C31 N28 980 sing 54 n n N28 C29 980 sing 55 n n C29 C30 980 sing 56 n n C29 H29 980 sing 57 n n C29 H29A 980 sing 58 n n C30 H30 980 sing 59 n n C30 H30A 980 sing 60 n n O32 C31 980 doub 61 n n C33 C31 980 sing 62 n n O36 C33 980 sing 63 n n C35 C33 980 sing 64 n n C33 H33 980 sing 65 n n C35 H35 980 sing 66 n n C35 H35A 980 sing 67 n n C35 H35B 980 sing 68 n n O36 HO36 980 sing 69 n n # _atom_sites.entry_id 3TL5 _atom_sites.fract_transf_matrix[1][1] 0.007099 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000843 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014923 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009517 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 980 A 1 1 1 980 980 . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 11 11 HOH HOH . C 3 HOH A 8 12 12 HOH HOH . C 3 HOH A 9 14 14 HOH HOH . C 3 HOH A 10 15 15 HOH HOH . C 3 HOH A 11 16 16 HOH HOH . C 3 HOH A 12 17 17 HOH HOH . C 3 HOH A 13 1109 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 980 . . . B 2 21.02 65.79 19.215 1 78.39 ? C1 980 1 A 1 HETATM 2 C C2 980 . . . B 2 20.086 64.902 19.967 1 84.31 ? C2 980 1 A 1 HETATM 3 C C3 980 . . . B 2 18.762 65.266 20.357 1 94.86 ? C3 980 1 A 1 HETATM 4 S S4 980 . . . B 2 18.12 63.921 21.206 1 68.07 ? S4 980 1 A 1 HETATM 5 C C5 980 . . . B 2 19.482 62.859 21.104 1 77.14 ? C5 980 1 A 1 HETATM 6 C C6 980 . . . B 2 20.479 63.545 20.396 1 83.41 ? C6 980 1 A 1 HETATM 7 N N7 980 . . . B 2 21.695 62.93 20.167 1 87.88 ? N7 980 1 A 1 HETATM 8 C C8 980 . . . B 2 21.946 61.668 20.582 1 85.56 ? C8 980 1 A 1 HETATM 9 N N9 980 . . . B 2 20.992 60.999 21.273 1 81.29 ? N9 980 1 A 1 HETATM 10 C C10 980 . . . B 2 19.778 61.538 21.542 1 70.35 ? C10 980 1 A 1 HETATM 11 N N11 980 . . . B 2 18.825 60.748 22.285 1 68.82 ? N11 980 1 A 1 HETATM 12 C C12 980 . . . B 2 17.577 60.585 21.698 1 66.5 ? C12 980 1 A 1 HETATM 13 C C13 980 . . . B 2 16.588 60.294 22.776 1 71.66 ? C13 980 1 A 1 HETATM 14 O O14 980 . . . B 2 16.934 59.205 23.603 1 64.08 ? O14 980 1 A 1 HETATM 15 C C15 980 . . . B 2 18.213 59.338 24.122 1 62.18 ? C15 980 1 A 1 HETATM 16 C C16 980 . . . B 2 19.209 59.638 23.053 1 68.85 ? C16 980 1 A 1 HETATM 17 C C17 980 . . . B 2 23.299 60.996 20.329 1 83.15 ? C17 980 1 A 1 HETATM 18 C C18 980 . . . B 2 23.828 60.121 21.289 1 83.81 ? C18 980 1 A 1 HETATM 19 N N19 980 . . . B 2 25.022 59.534 21.082 1 86.65 ? N19 980 1 A 1 HETATM 20 C C20 980 . . . B 2 25.711 59.779 19.96 1 84.92 ? C20 980 1 A 1 HETATM 21 N N21 980 . . . B 2 25.224 60.601 19.021 1 85.28 ? N21 980 1 A 1 HETATM 22 C C22 980 . . . B 2 24.037 61.231 19.167 1 76.81 ? C22 980 1 A 1 HETATM 23 N N23 980 . . . B 2 26.981 59.148 19.755 1 85.31 ? N23 980 1 A 1 HETATM 24 C C24 980 . . . B 2 18.026 66.579 20.113 1 97.78 ? C24 980 1 A 1 HETATM 25 N N25 980 . . . B 2 17.514 66.688 18.947 1 100.49 ? N25 980 1 A 1 HETATM 26 C C26 980 . . . B 2 16.703 67.782 18.921 1 105.89 ? C26 980 1 A 1 HETATM 27 C C27 980 . . . B 2 16.144 68.016 17.543 1 105.16 ? C27 980 1 A 1 HETATM 28 N N28 980 . . . B 2 15.673 66.927 16.919 1 102.23 ? N28 980 1 A 1 HETATM 29 C C29 980 . . . B 2 16.289 65.774 17.169 1 103.22 ? C29 980 1 A 1 HETATM 30 C C30 980 . . . B 2 16.763 65.609 18.591 1 99.88 ? C30 980 1 A 1 HETATM 31 C C31 980 . . . B 2 14.573 66.99 15.982 1 106.74 ? C31 980 1 A 1 HETATM 32 O O32 980 . . . B 2 14.208 65.955 15.445 1 102.8 ? O32 980 1 A 1 HETATM 33 C C33 980 . . . B 2 13.875 68.307 15.717 1 114.06 ? C33 980 1 A 1 HETATM 34 C C35 980 . . . B 2 12.513 68.145 15.103 1 101.82 ? C35 980 1 A 1 HETATM 35 O O36 980 . . . B 2 14.648 69.123 14.916 1 122.09 ? O36 980 1 A 1 # _model_server_stats.io_time_ms 101 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 1064 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 35 #