data_3TL9
#
_model_server_result.job_id            uYOkhtSTWnpGJVWfYJWRSA 
_model_server_result.datetime_utc      '2024-11-24 11:47:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3tl9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":403}' 
#
_entry.id    3TL9 
#
_exptl.entry_id    3TL9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3TL9 
_cell.length_a            59.414 
_cell.length_b            86.1 
_cell.length_c            46.097 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3TL9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ASP 64 A ASP 60 1_555 E NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc2 E NA NA . A NA 403 1_555 H O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? 
metalc ? metalc3 E NA NA . A NA 403 1_555 H O HOH . A HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? 
metalc ? metalc4 E NA NA . A NA 403 1_555 H O HOH . A HOH 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? 
metalc ? metalc5 E NA NA . A NA 403 1_555 H O HOH . A HOH 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc6 E NA NA . A NA 403 1_555 H O HOH . A HOH 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3TL9 
_atom_sites.fract_transf_matrix[1][1]    0.016831 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011614 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021693 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ROC A 1 401 401 ROC ROC . 
D 3 CL A 1 402 601 CL CL . 
E 4 NA A 1 403 611 NA NA . 
F 5 GOL B 1 501 501 GOL GOL . 
G 3 CL B 1 502 602 CL CL . 
H 6 HOH A 1 501 1002 HOH HOH . 
H 6 HOH A 2 502 1005 HOH HOH . 
H 6 HOH A 3 503 1007 HOH HOH . 
H 6 HOH A 4 504 1008 HOH HOH . 
H 6 HOH A 5 505 1009 HOH HOH . 
H 6 HOH A 6 506 1010 HOH HOH . 
H 6 HOH A 7 507 1012 HOH HOH . 
H 6 HOH A 8 508 1016 HOH HOH . 
H 6 HOH A 9 509 1017 HOH HOH . 
H 6 HOH A 10 510 1018 HOH HOH . 
H 6 HOH A 11 511 1022 HOH HOH . 
H 6 HOH A 12 512 1025 HOH HOH . 
H 6 HOH A 13 513 1026 HOH HOH . 
H 6 HOH A 14 514 1029 HOH HOH . 
H 6 HOH A 15 515 1031 HOH HOH . 
H 6 HOH A 16 516 1033 HOH HOH . 
H 6 HOH A 17 517 1034 HOH HOH . 
H 6 HOH A 18 518 1036 HOH HOH . 
H 6 HOH A 19 519 1037 HOH HOH . 
H 6 HOH A 20 520 1038 HOH HOH . 
H 6 HOH A 21 521 1039 HOH HOH . 
H 6 HOH A 22 522 1041 HOH HOH . 
H 6 HOH A 23 523 1044 HOH HOH . 
H 6 HOH A 24 524 1046 HOH HOH . 
H 6 HOH A 25 525 1047 HOH HOH . 
H 6 HOH A 26 526 1048 HOH HOH . 
H 6 HOH A 27 527 1050 HOH HOH . 
H 6 HOH A 28 528 1051 HOH HOH . 
H 6 HOH A 29 529 1054 HOH HOH . 
H 6 HOH A 30 530 1056 HOH HOH . 
H 6 HOH A 31 531 1060 HOH HOH . 
H 6 HOH A 32 532 1061 HOH HOH . 
H 6 HOH A 33 533 1062 HOH HOH . 
H 6 HOH A 34 534 1065 HOH HOH . 
H 6 HOH A 35 535 1066 HOH HOH . 
H 6 HOH A 36 536 1067 HOH HOH . 
H 6 HOH A 37 537 1068 HOH HOH . 
H 6 HOH A 38 538 1069 HOH HOH . 
H 6 HOH A 39 539 1070 HOH HOH . 
H 6 HOH A 40 540 1072 HOH HOH . 
H 6 HOH A 41 541 1073 HOH HOH . 
H 6 HOH A 42 542 1074 HOH HOH . 
H 6 HOH A 43 543 1075 HOH HOH . 
H 6 HOH A 44 544 1077 HOH HOH . 
H 6 HOH A 45 545 1079 HOH HOH . 
H 6 HOH A 46 546 1081 HOH HOH . 
H 6 HOH A 47 547 1082 HOH HOH . 
H 6 HOH A 48 548 1086 HOH HOH . 
H 6 HOH A 49 549 1088 HOH HOH . 
H 6 HOH A 50 550 1096 HOH HOH . 
H 6 HOH A 51 551 1097 HOH HOH . 
H 6 HOH A 52 552 1099 HOH HOH . 
H 6 HOH A 53 553 1101 HOH HOH . 
H 6 HOH A 54 554 1102 HOH HOH . 
H 6 HOH A 55 555 1105 HOH HOH . 
H 6 HOH A 56 556 1107 HOH HOH . 
H 6 HOH A 57 557 1111 HOH HOH . 
H 6 HOH A 58 558 1112 HOH HOH . 
H 6 HOH A 59 559 1113 HOH HOH . 
H 6 HOH A 60 560 1115 HOH HOH . 
H 6 HOH A 61 561 1116 HOH HOH . 
H 6 HOH A 62 562 1117 HOH HOH . 
H 6 HOH A 63 563 1118 HOH HOH . 
H 6 HOH A 64 564 1122 HOH HOH . 
H 6 HOH A 65 565 1125 HOH HOH . 
H 6 HOH A 66 566 1126 HOH HOH . 
H 6 HOH A 67 567 1127 HOH HOH . 
H 6 HOH A 68 568 1128 HOH HOH . 
H 6 HOH A 69 569 1130 HOH HOH . 
H 6 HOH A 70 570 1131 HOH HOH . 
H 6 HOH A 71 571 1132 HOH HOH . 
H 6 HOH A 72 572 1133 HOH HOH . 
H 6 HOH A 73 573 1134 HOH HOH . 
H 6 HOH A 74 574 1137 HOH HOH . 
H 6 HOH A 75 575 1138 HOH HOH . 
H 6 HOH A 76 576 1141 HOH HOH . 
H 6 HOH A 77 577 1142 HOH HOH . 
H 6 HOH A 78 578 1143 HOH HOH . 
H 6 HOH A 79 579 1145 HOH HOH . 
H 6 HOH A 80 580 1147 HOH HOH . 
H 6 HOH A 81 581 1151 HOH HOH . 
H 6 HOH A 82 582 1152 HOH HOH . 
H 6 HOH A 83 583 1158 HOH HOH . 
H 6 HOH A 84 584 1159 HOH HOH . 
H 6 HOH A 85 585 1160 HOH HOH . 
H 6 HOH A 86 586 1161 HOH HOH . 
H 6 HOH A 87 587 1162 HOH HOH . 
H 6 HOH A 88 588 1163 HOH HOH . 
I 6 HOH B 1 1001 1001 HOH HOH . 
I 6 HOH B 2 1002 1003 HOH HOH . 
I 6 HOH B 3 1003 1004 HOH HOH . 
I 6 HOH B 4 1004 1006 HOH HOH . 
I 6 HOH B 5 1005 1011 HOH HOH . 
I 6 HOH B 6 1006 1013 HOH HOH . 
I 6 HOH B 7 1007 1014 HOH HOH . 
I 6 HOH B 8 1008 1015 HOH HOH . 
I 6 HOH B 9 1009 1019 HOH HOH . 
I 6 HOH B 10 1010 1020 HOH HOH . 
I 6 HOH B 11 1011 1021 HOH HOH . 
I 6 HOH B 12 1012 1023 HOH HOH . 
I 6 HOH B 13 1013 1024 HOH HOH . 
I 6 HOH B 14 1014 1027 HOH HOH . 
I 6 HOH B 15 1015 1028 HOH HOH . 
I 6 HOH B 16 1016 1030 HOH HOH . 
I 6 HOH B 17 1017 1032 HOH HOH . 
I 6 HOH B 18 1018 1035 HOH HOH . 
I 6 HOH B 19 1019 1040 HOH HOH . 
I 6 HOH B 20 1020 1042 HOH HOH . 
I 6 HOH B 21 1021 1043 HOH HOH . 
I 6 HOH B 22 1022 1045 HOH HOH . 
I 6 HOH B 23 1023 1049 HOH HOH . 
I 6 HOH B 24 1024 1052 HOH HOH . 
I 6 HOH B 25 1025 1053 HOH HOH . 
I 6 HOH B 26 1026 1055 HOH HOH . 
I 6 HOH B 27 1027 1057 HOH HOH . 
I 6 HOH B 28 1028 1058 HOH HOH . 
I 6 HOH B 29 1029 1059 HOH HOH . 
I 6 HOH B 30 1030 1063 HOH HOH . 
I 6 HOH B 31 1031 1064 HOH HOH . 
I 6 HOH B 32 1032 1071 HOH HOH . 
I 6 HOH B 33 1033 1076 HOH HOH . 
I 6 HOH B 34 1034 1078 HOH HOH . 
I 6 HOH B 35 1035 1080 HOH HOH . 
I 6 HOH B 36 1036 1083 HOH HOH . 
I 6 HOH B 37 1037 1084 HOH HOH . 
I 6 HOH B 38 1038 1085 HOH HOH . 
I 6 HOH B 39 1039 1087 HOH HOH . 
I 6 HOH B 40 1040 1089 HOH HOH . 
I 6 HOH B 41 1041 1090 HOH HOH . 
I 6 HOH B 42 1042 1091 HOH HOH . 
I 6 HOH B 43 1043 1092 HOH HOH . 
I 6 HOH B 44 1044 1093 HOH HOH . 
I 6 HOH B 45 1045 1094 HOH HOH . 
I 6 HOH B 46 1046 1095 HOH HOH . 
I 6 HOH B 47 1047 1098 HOH HOH . 
I 6 HOH B 48 1048 1100 HOH HOH . 
I 6 HOH B 49 1049 1103 HOH HOH . 
I 6 HOH B 50 1050 1104 HOH HOH . 
I 6 HOH B 51 1051 1106 HOH HOH . 
I 6 HOH B 52 1052 1108 HOH HOH . 
I 6 HOH B 53 1053 1109 HOH HOH . 
I 6 HOH B 54 1054 1110 HOH HOH . 
I 6 HOH B 55 1055 1114 HOH HOH . 
I 6 HOH B 56 1056 1119 HOH HOH . 
I 6 HOH B 57 1057 1120 HOH HOH . 
I 6 HOH B 58 1058 1121 HOH HOH . 
I 6 HOH B 59 1059 1123 HOH HOH . 
I 6 HOH B 60 1060 1124 HOH HOH . 
I 6 HOH B 61 1061 1129 HOH HOH . 
I 6 HOH B 62 1062 1135 HOH HOH . 
I 6 HOH B 63 1063 1136 HOH HOH . 
I 6 HOH B 64 1064 1139 HOH HOH . 
I 6 HOH B 65 1065 1140 HOH HOH . 
I 6 HOH B 66 1066 1144 HOH HOH . 
I 6 HOH B 67 1067 1146 HOH HOH . 
I 6 HOH B 68 1068 1148 HOH HOH . 
I 6 HOH B 69 1069 1149 HOH HOH . 
I 6 HOH B 70 1070 1150 HOH HOH . 
I 6 HOH B 71 1071 1153 HOH HOH . 
I 6 HOH B 72 1072 1154 HOH HOH . 
I 6 HOH B 73 1073 1155 HOH HOH . 
I 6 HOH B 74 1074 1156 HOH HOH . 
I 6 HOH B 75 1075 1157 HOH HOH . 
I 6 HOH B 76 1076 1164 HOH HOH . 
I 6 HOH B 77 1077 1165 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -4.585 
_atom_site.Cartn_y               3.441 
_atom_site.Cartn_z               -1.068 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        27.02 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           403 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           780 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           1 
#