data_3TL9 # _model_server_result.job_id V96iKdkZ8U-H71AMH4QekQ _model_server_result.datetime_utc '2024-11-28 05:02:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tl9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 3TL9 # _exptl.entry_id 3TL9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TL9 _cell.length_a 59.414 _cell.length_b 86.1 _cell.length_c 46.097 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TL9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 64 A ASP 60 1_555 E NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc2 E NA NA . A NA 403 1_555 H O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc3 E NA NA . A NA 403 1_555 H O HOH . A HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc4 E NA NA . A NA 403 1_555 H O HOH . A HOH 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc5 E NA NA . A NA 403 1_555 H O HOH . A HOH 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc6 E NA NA . A NA 403 1_555 H O HOH . A HOH 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3TL9 _atom_sites.fract_transf_matrix[1][1] 0.016831 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011614 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021693 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ROC A 1 401 401 ROC ROC . D 3 CL A 1 402 601 CL CL . E 4 NA A 1 403 611 NA NA . F 5 GOL B 1 501 501 GOL GOL . G 3 CL B 1 502 602 CL CL . H 6 HOH A 1 501 1002 HOH HOH . H 6 HOH A 2 502 1005 HOH HOH . H 6 HOH A 3 503 1007 HOH HOH . H 6 HOH A 4 504 1008 HOH HOH . H 6 HOH A 5 505 1009 HOH HOH . H 6 HOH A 6 506 1010 HOH HOH . H 6 HOH A 7 507 1012 HOH HOH . H 6 HOH A 8 508 1016 HOH HOH . H 6 HOH A 9 509 1017 HOH HOH . H 6 HOH A 10 510 1018 HOH HOH . H 6 HOH A 11 511 1022 HOH HOH . H 6 HOH A 12 512 1025 HOH HOH . H 6 HOH A 13 513 1026 HOH HOH . H 6 HOH A 14 514 1029 HOH HOH . H 6 HOH A 15 515 1031 HOH HOH . H 6 HOH A 16 516 1033 HOH HOH . H 6 HOH A 17 517 1034 HOH HOH . H 6 HOH A 18 518 1036 HOH HOH . H 6 HOH A 19 519 1037 HOH HOH . H 6 HOH A 20 520 1038 HOH HOH . H 6 HOH A 21 521 1039 HOH HOH . H 6 HOH A 22 522 1041 HOH HOH . H 6 HOH A 23 523 1044 HOH HOH . H 6 HOH A 24 524 1046 HOH HOH . H 6 HOH A 25 525 1047 HOH HOH . H 6 HOH A 26 526 1048 HOH HOH . H 6 HOH A 27 527 1050 HOH HOH . H 6 HOH A 28 528 1051 HOH HOH . H 6 HOH A 29 529 1054 HOH HOH . H 6 HOH A 30 530 1056 HOH HOH . H 6 HOH A 31 531 1060 HOH HOH . H 6 HOH A 32 532 1061 HOH HOH . H 6 HOH A 33 533 1062 HOH HOH . H 6 HOH A 34 534 1065 HOH HOH . H 6 HOH A 35 535 1066 HOH HOH . H 6 HOH A 36 536 1067 HOH HOH . H 6 HOH A 37 537 1068 HOH HOH . H 6 HOH A 38 538 1069 HOH HOH . H 6 HOH A 39 539 1070 HOH HOH . H 6 HOH A 40 540 1072 HOH HOH . H 6 HOH A 41 541 1073 HOH HOH . H 6 HOH A 42 542 1074 HOH HOH . H 6 HOH A 43 543 1075 HOH HOH . H 6 HOH A 44 544 1077 HOH HOH . H 6 HOH A 45 545 1079 HOH HOH . H 6 HOH A 46 546 1081 HOH HOH . H 6 HOH A 47 547 1082 HOH HOH . H 6 HOH A 48 548 1086 HOH HOH . H 6 HOH A 49 549 1088 HOH HOH . H 6 HOH A 50 550 1096 HOH HOH . H 6 HOH A 51 551 1097 HOH HOH . H 6 HOH A 52 552 1099 HOH HOH . H 6 HOH A 53 553 1101 HOH HOH . H 6 HOH A 54 554 1102 HOH HOH . H 6 HOH A 55 555 1105 HOH HOH . H 6 HOH A 56 556 1107 HOH HOH . H 6 HOH A 57 557 1111 HOH HOH . H 6 HOH A 58 558 1112 HOH HOH . H 6 HOH A 59 559 1113 HOH HOH . H 6 HOH A 60 560 1115 HOH HOH . H 6 HOH A 61 561 1116 HOH HOH . H 6 HOH A 62 562 1117 HOH HOH . H 6 HOH A 63 563 1118 HOH HOH . H 6 HOH A 64 564 1122 HOH HOH . H 6 HOH A 65 565 1125 HOH HOH . H 6 HOH A 66 566 1126 HOH HOH . H 6 HOH A 67 567 1127 HOH HOH . H 6 HOH A 68 568 1128 HOH HOH . H 6 HOH A 69 569 1130 HOH HOH . H 6 HOH A 70 570 1131 HOH HOH . H 6 HOH A 71 571 1132 HOH HOH . H 6 HOH A 72 572 1133 HOH HOH . H 6 HOH A 73 573 1134 HOH HOH . H 6 HOH A 74 574 1137 HOH HOH . H 6 HOH A 75 575 1138 HOH HOH . H 6 HOH A 76 576 1141 HOH HOH . H 6 HOH A 77 577 1142 HOH HOH . H 6 HOH A 78 578 1143 HOH HOH . H 6 HOH A 79 579 1145 HOH HOH . H 6 HOH A 80 580 1147 HOH HOH . H 6 HOH A 81 581 1151 HOH HOH . H 6 HOH A 82 582 1152 HOH HOH . H 6 HOH A 83 583 1158 HOH HOH . H 6 HOH A 84 584 1159 HOH HOH . H 6 HOH A 85 585 1160 HOH HOH . H 6 HOH A 86 586 1161 HOH HOH . H 6 HOH A 87 587 1162 HOH HOH . H 6 HOH A 88 588 1163 HOH HOH . I 6 HOH B 1 1001 1001 HOH HOH . I 6 HOH B 2 1002 1003 HOH HOH . I 6 HOH B 3 1003 1004 HOH HOH . I 6 HOH B 4 1004 1006 HOH HOH . I 6 HOH B 5 1005 1011 HOH HOH . I 6 HOH B 6 1006 1013 HOH HOH . I 6 HOH B 7 1007 1014 HOH HOH . I 6 HOH B 8 1008 1015 HOH HOH . I 6 HOH B 9 1009 1019 HOH HOH . I 6 HOH B 10 1010 1020 HOH HOH . I 6 HOH B 11 1011 1021 HOH HOH . I 6 HOH B 12 1012 1023 HOH HOH . I 6 HOH B 13 1013 1024 HOH HOH . I 6 HOH B 14 1014 1027 HOH HOH . I 6 HOH B 15 1015 1028 HOH HOH . I 6 HOH B 16 1016 1030 HOH HOH . I 6 HOH B 17 1017 1032 HOH HOH . I 6 HOH B 18 1018 1035 HOH HOH . I 6 HOH B 19 1019 1040 HOH HOH . I 6 HOH B 20 1020 1042 HOH HOH . I 6 HOH B 21 1021 1043 HOH HOH . I 6 HOH B 22 1022 1045 HOH HOH . I 6 HOH B 23 1023 1049 HOH HOH . I 6 HOH B 24 1024 1052 HOH HOH . I 6 HOH B 25 1025 1053 HOH HOH . I 6 HOH B 26 1026 1055 HOH HOH . I 6 HOH B 27 1027 1057 HOH HOH . I 6 HOH B 28 1028 1058 HOH HOH . I 6 HOH B 29 1029 1059 HOH HOH . I 6 HOH B 30 1030 1063 HOH HOH . I 6 HOH B 31 1031 1064 HOH HOH . I 6 HOH B 32 1032 1071 HOH HOH . I 6 HOH B 33 1033 1076 HOH HOH . I 6 HOH B 34 1034 1078 HOH HOH . I 6 HOH B 35 1035 1080 HOH HOH . I 6 HOH B 36 1036 1083 HOH HOH . I 6 HOH B 37 1037 1084 HOH HOH . I 6 HOH B 38 1038 1085 HOH HOH . I 6 HOH B 39 1039 1087 HOH HOH . I 6 HOH B 40 1040 1089 HOH HOH . I 6 HOH B 41 1041 1090 HOH HOH . I 6 HOH B 42 1042 1091 HOH HOH . I 6 HOH B 43 1043 1092 HOH HOH . I 6 HOH B 44 1044 1093 HOH HOH . I 6 HOH B 45 1045 1094 HOH HOH . I 6 HOH B 46 1046 1095 HOH HOH . I 6 HOH B 47 1047 1098 HOH HOH . I 6 HOH B 48 1048 1100 HOH HOH . I 6 HOH B 49 1049 1103 HOH HOH . I 6 HOH B 50 1050 1104 HOH HOH . I 6 HOH B 51 1051 1106 HOH HOH . I 6 HOH B 52 1052 1108 HOH HOH . I 6 HOH B 53 1053 1109 HOH HOH . I 6 HOH B 54 1054 1110 HOH HOH . I 6 HOH B 55 1055 1114 HOH HOH . I 6 HOH B 56 1056 1119 HOH HOH . I 6 HOH B 57 1057 1120 HOH HOH . I 6 HOH B 58 1058 1121 HOH HOH . I 6 HOH B 59 1059 1123 HOH HOH . I 6 HOH B 60 1060 1124 HOH HOH . I 6 HOH B 61 1061 1129 HOH HOH . I 6 HOH B 62 1062 1135 HOH HOH . I 6 HOH B 63 1063 1136 HOH HOH . I 6 HOH B 64 1064 1139 HOH HOH . I 6 HOH B 65 1065 1140 HOH HOH . I 6 HOH B 66 1066 1144 HOH HOH . I 6 HOH B 67 1067 1146 HOH HOH . I 6 HOH B 68 1068 1148 HOH HOH . I 6 HOH B 69 1069 1149 HOH HOH . I 6 HOH B 70 1070 1150 HOH HOH . I 6 HOH B 71 1071 1153 HOH HOH . I 6 HOH B 72 1072 1154 HOH HOH . I 6 HOH B 73 1073 1155 HOH HOH . I 6 HOH B 74 1074 1156 HOH HOH . I 6 HOH B 75 1075 1157 HOH HOH . I 6 HOH B 76 1076 1164 HOH HOH . I 6 HOH B 77 1077 1165 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 -13.445 14.648 -40.29 1 45.97 ? C1 GOL 501 B 1 HETATM 2 O O1 GOL . . . F 5 -13.653 13.595 -41.215 1 40.66 ? O1 GOL 501 B 1 HETATM 3 C C2 GOL . . . F 5 -14.345 15.792 -40.73 1 43.61 ? C2 GOL 501 B 1 HETATM 4 O O2 GOL . . . F 5 -15.228 15.307 -41.754 1 50.54 ? O2 GOL 501 B 1 HETATM 5 C C3 GOL . . . F 5 -15.111 16.364 -39.554 1 42.6 ? C3 GOL 501 B 1 HETATM 6 O O3 GOL . . . F 5 -16.508 16.18 -39.751 1 47.33 ? O3 GOL 501 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #