data_3TLP
#
_model_server_result.job_id            2ugGrFXrn7qPk2Mxt_dg7w 
_model_server_result.datetime_utc      '2024-11-06 01:26:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3tlp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":2}' 
#
_entry.id    3TLP 
#
_exptl.entry_id    3TLP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3TLP 
_cell.length_a            49.431 
_cell.length_b            60.22 
_cell.length_c            109.907 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3TLP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,G 1 1 
B,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C NI NI . A NI 1 1_555 G O HOH . A HOH 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc2 C NI NI . A NI 1 1_555 G O HOH . A HOH 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? 
metalc ? metalc3 C NI NI . A NI 1 1_555 G O HOH . A HOH 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? 
metalc ? metalc4 C NI NI . A NI 1 1_555 G O HOH . A HOH 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc5 C NI NI . A NI 1 1_555 A NE2 HIS 105 A HIS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc6 D NI NI . A NI 3 1_555 A NE2 HIS 79 A HIS 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc7 D NI NI . A NI 3 1_555 A NZ LYS 85 A LYS 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc8 E NI NI . A NI 4 1_555 A NE2 HIS 118 A HIS 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? 
metalc ? metalc9 E NI NI . A NI 4 1_555 A NZ LYS 122 A LYS 584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? 
metalc ? metalc10 F NI NI . B NI 2 1_555 H O HOH . B HOH 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc11 F NI NI . B NI 2 1_555 H O HOH . B HOH 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc12 F NI NI . B NI 2 1_555 H O HOH . B HOH 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc13 F NI NI . B NI 2 1_555 B NE2 HIS 118 B HIS 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc14 F NI NI . B NI 2 1_555 B NZ LYS 122 B LYS 584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3TLP 
_atom_sites.fract_transf_matrix[1][1]    0.02023 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016606 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009099 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NI A 1 1 1 NI NI . 
D 2 NI A 1 3 3 NI NI . 
E 2 NI A 1 4 4 NI NI . 
F 2 NI B 1 2 2 NI NI . 
G 3 HOH A 1 2 2 HOH HOH . 
G 3 HOH A 2 5 5 HOH HOH . 
G 3 HOH A 3 11 11 HOH HOH . 
G 3 HOH A 4 14 14 HOH HOH . 
G 3 HOH A 5 15 15 HOH HOH . 
G 3 HOH A 6 20 20 HOH HOH . 
G 3 HOH A 7 21 21 HOH HOH . 
G 3 HOH A 8 23 23 HOH HOH . 
G 3 HOH A 9 24 24 HOH HOH . 
G 3 HOH A 10 29 29 HOH HOH . 
G 3 HOH A 11 34 34 HOH HOH . 
G 3 HOH A 12 37 37 HOH HOH . 
G 3 HOH A 13 40 40 HOH HOH . 
G 3 HOH A 14 42 42 HOH HOH . 
G 3 HOH A 15 43 43 HOH HOH . 
G 3 HOH A 16 44 44 HOH HOH . 
G 3 HOH A 17 45 45 HOH HOH . 
G 3 HOH A 18 49 49 HOH HOH . 
G 3 HOH A 19 50 50 HOH HOH . 
G 3 HOH A 20 55 55 HOH HOH . 
G 3 HOH A 21 56 56 HOH HOH . 
G 3 HOH A 22 57 57 HOH HOH . 
G 3 HOH A 23 59 59 HOH HOH . 
G 3 HOH A 24 62 62 HOH HOH . 
G 3 HOH A 25 63 63 HOH HOH . 
G 3 HOH A 26 64 64 HOH HOH . 
G 3 HOH A 27 65 65 HOH HOH . 
G 3 HOH A 28 66 66 HOH HOH . 
G 3 HOH A 29 68 68 HOH HOH . 
G 3 HOH A 30 69 69 HOH HOH . 
G 3 HOH A 31 70 70 HOH HOH . 
G 3 HOH A 32 71 71 HOH HOH . 
G 3 HOH A 33 72 72 HOH HOH . 
G 3 HOH A 34 78 78 HOH HOH . 
G 3 HOH A 35 79 79 HOH HOH . 
G 3 HOH A 36 613 1 HOH HOH . 
G 3 HOH A 37 614 4 HOH HOH . 
H 3 HOH B 1 3 3 HOH HOH . 
H 3 HOH B 2 6 6 HOH HOH . 
H 3 HOH B 3 7 7 HOH HOH . 
H 3 HOH B 4 8 8 HOH HOH . 
H 3 HOH B 5 9 9 HOH HOH . 
H 3 HOH B 6 10 10 HOH HOH . 
H 3 HOH B 7 12 12 HOH HOH . 
H 3 HOH B 8 13 13 HOH HOH . 
H 3 HOH B 9 16 16 HOH HOH . 
H 3 HOH B 10 17 17 HOH HOH . 
H 3 HOH B 11 18 18 HOH HOH . 
H 3 HOH B 12 19 19 HOH HOH . 
H 3 HOH B 13 22 22 HOH HOH . 
H 3 HOH B 14 25 25 HOH HOH . 
H 3 HOH B 15 27 27 HOH HOH . 
H 3 HOH B 16 28 28 HOH HOH . 
H 3 HOH B 17 30 30 HOH HOH . 
H 3 HOH B 18 31 31 HOH HOH . 
H 3 HOH B 19 32 32 HOH HOH . 
H 3 HOH B 20 33 33 HOH HOH . 
H 3 HOH B 21 35 35 HOH HOH . 
H 3 HOH B 22 36 36 HOH HOH . 
H 3 HOH B 23 38 38 HOH HOH . 
H 3 HOH B 24 39 39 HOH HOH . 
H 3 HOH B 25 41 41 HOH HOH . 
H 3 HOH B 26 46 46 HOH HOH . 
H 3 HOH B 27 47 47 HOH HOH . 
H 3 HOH B 28 48 48 HOH HOH . 
H 3 HOH B 29 51 51 HOH HOH . 
H 3 HOH B 30 52 52 HOH HOH . 
H 3 HOH B 31 53 53 HOH HOH . 
H 3 HOH B 32 54 54 HOH HOH . 
H 3 HOH B 33 58 58 HOH HOH . 
H 3 HOH B 34 60 60 HOH HOH . 
H 3 HOH B 35 61 61 HOH HOH . 
H 3 HOH B 36 67 67 HOH HOH . 
H 3 HOH B 37 73 73 HOH HOH . 
H 3 HOH B 38 74 74 HOH HOH . 
H 3 HOH B 39 75 75 HOH HOH . 
H 3 HOH B 40 76 76 HOH HOH . 
H 3 HOH B 41 77 77 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -4.888 
_atom_site.Cartn_y               -22.639 
_atom_site.Cartn_z               -0.93 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        38.35 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           2 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#