data_3TM6 # _model_server_result.job_id 2dTXluZBoFepSjpV-DUEVA _model_server_result.datetime_utc '2024-11-14 14:23:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tm6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":100}' # _entry.id 3TM6 # _exptl.entry_id 3TM6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.67 _cell.angle_gamma 90 _cell.entry_id 3TM6 _cell.length_a 90.102 _cell.length_b 56.272 _cell.length_c 96.374 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TM6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,T,U,V,W 1 1 E,F,G,H,O,P,Q,R,S,X,Y,Z,AA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 K N N ? 3 L N N ? 3 M N N ? 3 O N N ? 3 P N N ? 3 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 25 1_555 A SG CYS 81 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 51 A CYS 50 1_555 B SG CYS 51 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 C SG CYS 26 C CYS 25 1_555 C SG CYS 81 C CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 C SG CYS 51 C CYS 50 1_555 D SG CYS 51 D CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf6 D SG CYS 26 D CYS 25 1_555 D SG CYS 81 D CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 E SG CYS 26 E CYS 25 1_555 E SG CYS 81 E CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf8 E SG CYS 51 E CYS 50 1_555 F SG CYS 51 F CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 F SG CYS 26 F CYS 25 1_555 F SG CYS 81 F CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf10 G SG CYS 26 G CYS 25 1_555 G SG CYS 81 G CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 G SG CYS 51 G CYS 50 1_555 H SG CYS 51 H CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf12 H SG CYS 26 H CYS 25 1_555 H SG CYS 81 H CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 276 n n P O2 PO4 sing 277 n n P O3 PO4 sing 278 n n P O4 PO4 sing 279 n n # _atom_sites.entry_id 3TM6 _atom_sites.fract_transf_matrix[1][1] 0.011099 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005334 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011512 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 PEG A 1 201 201 PEG PEG . J 2 PEG B 1 200 200 PEG PEG . K 3 PO4 B 1 100 1 PO4 PO4 . L 3 PO4 C 1 100 2 PO4 PO4 . M 3 PO4 C 1 101 6 PO4 PO4 . N 2 PEG D 1 200 200 PEG PEG . O 3 PO4 E 1 100 3 PO4 PO4 . P 3 PO4 F 1 100 7 PO4 PO4 . Q 2 PEG G 1 200 200 PEG PEG . R 2 PEG G 1 100 200 PEG PEG . S 3 PO4 H 1 100 5 PO4 PO4 . T 4 HOH A 1 100 13 HOH HOH . T 4 HOH A 2 101 20 HOH HOH . T 4 HOH A 3 102 30 HOH HOH . T 4 HOH A 4 103 31 HOH HOH . T 4 HOH A 5 104 45 HOH HOH . T 4 HOH A 6 105 46 HOH HOH . T 4 HOH A 7 106 48 HOH HOH . T 4 HOH A 8 107 49 HOH HOH . T 4 HOH A 9 108 50 HOH HOH . T 4 HOH A 10 109 52 HOH HOH . T 4 HOH A 11 110 53 HOH HOH . T 4 HOH A 12 111 54 HOH HOH . T 4 HOH A 13 112 56 HOH HOH . T 4 HOH A 14 113 57 HOH HOH . T 4 HOH A 15 114 61 HOH HOH . T 4 HOH A 16 115 62 HOH HOH . T 4 HOH A 17 116 63 HOH HOH . U 4 HOH B 1 101 11 HOH HOH . U 4 HOH B 2 102 33 HOH HOH . U 4 HOH B 3 103 34 HOH HOH . U 4 HOH B 4 104 47 HOH HOH . U 4 HOH B 5 105 105 HOH HOH . U 4 HOH B 6 106 55 HOH HOH . U 4 HOH B 7 107 82 HOH HOH . U 4 HOH B 8 108 83 HOH HOH . U 4 HOH B 9 109 109 HOH HOH . U 4 HOH B 10 110 84 HOH HOH . U 4 HOH B 11 111 111 HOH HOH . U 4 HOH B 12 112 112 HOH HOH . U 4 HOH B 13 113 85 HOH HOH . U 4 HOH B 14 114 86 HOH HOH . U 4 HOH B 15 115 87 HOH HOH . V 4 HOH C 1 102 1 HOH HOH . V 4 HOH C 2 103 17 HOH HOH . V 4 HOH C 3 104 25 HOH HOH . V 4 HOH C 4 105 26 HOH HOH . V 4 HOH C 5 106 32 HOH HOH . V 4 HOH C 6 107 39 HOH HOH . V 4 HOH C 7 108 58 HOH HOH . V 4 HOH C 8 109 60 HOH HOH . V 4 HOH C 9 110 64 HOH HOH . V 4 HOH C 10 111 65 HOH HOH . V 4 HOH C 11 112 66 HOH HOH . V 4 HOH C 12 113 67 HOH HOH . V 4 HOH C 13 114 68 HOH HOH . V 4 HOH C 14 115 69 HOH HOH . V 4 HOH C 15 116 70 HOH HOH . V 4 HOH C 16 117 71 HOH HOH . W 4 HOH D 1 100 3 HOH HOH . W 4 HOH D 2 101 27 HOH HOH . W 4 HOH D 3 102 29 HOH HOH . W 4 HOH D 4 103 35 HOH HOH . W 4 HOH D 5 104 36 HOH HOH . W 4 HOH D 6 105 51 HOH HOH . W 4 HOH D 7 106 106 HOH HOH . W 4 HOH D 8 107 59 HOH HOH . W 4 HOH D 9 108 88 HOH HOH . W 4 HOH D 10 109 89 HOH HOH . W 4 HOH D 11 110 90 HOH HOH . X 4 HOH E 1 101 4 HOH HOH . X 4 HOH E 2 102 5 HOH HOH . X 4 HOH E 3 103 6 HOH HOH . X 4 HOH E 4 104 8 HOH HOH . X 4 HOH E 5 105 44 HOH HOH . X 4 HOH E 6 106 72 HOH HOH . X 4 HOH E 7 107 73 HOH HOH . X 4 HOH E 8 108 75 HOH HOH . X 4 HOH E 9 109 76 HOH HOH . X 4 HOH E 10 110 77 HOH HOH . X 4 HOH E 11 111 80 HOH HOH . X 4 HOH E 12 112 81 HOH HOH . Y 4 HOH F 1 101 10 HOH HOH . Y 4 HOH F 2 102 12 HOH HOH . Y 4 HOH F 3 103 15 HOH HOH . Y 4 HOH F 4 104 18 HOH HOH . Y 4 HOH F 5 105 19 HOH HOH . Y 4 HOH F 6 106 21 HOH HOH . Y 4 HOH F 7 107 38 HOH HOH . Y 4 HOH F 8 108 40 HOH HOH . Y 4 HOH F 9 109 43 HOH HOH . Y 4 HOH F 10 110 110 HOH HOH . Y 4 HOH F 11 111 78 HOH HOH . Y 4 HOH F 12 112 79 HOH HOH . Y 4 HOH F 13 113 99 HOH HOH . Y 4 HOH F 14 114 92 HOH HOH . Y 4 HOH F 15 115 93 HOH HOH . Y 4 HOH F 16 116 94 HOH HOH . Y 4 HOH F 17 117 95 HOH HOH . Y 4 HOH F 18 118 96 HOH HOH . Y 4 HOH F 19 119 91 HOH HOH . Z 4 HOH G 1 101 2 HOH HOH . Z 4 HOH G 2 102 7 HOH HOH . Z 4 HOH G 3 103 9 HOH HOH . Z 4 HOH G 4 104 16 HOH HOH . Z 4 HOH G 5 105 22 HOH HOH . Z 4 HOH G 6 106 23 HOH HOH . Z 4 HOH G 7 107 107 HOH HOH . Z 4 HOH G 8 108 108 HOH HOH . Z 4 HOH G 9 109 24 HOH HOH . Z 4 HOH G 10 110 28 HOH HOH . Z 4 HOH G 11 111 41 HOH HOH . Z 4 HOH G 12 112 42 HOH HOH . Z 4 HOH G 13 113 74 HOH HOH . Z 4 HOH G 14 114 97 HOH HOH . Z 4 HOH G 15 115 100 HOH HOH . AA 4 HOH H 1 101 101 HOH HOH . AA 4 HOH H 2 102 102 HOH HOH . AA 4 HOH H 3 103 103 HOH HOH . AA 4 HOH H 4 104 104 HOH HOH . AA 4 HOH H 5 105 14 HOH HOH . AA 4 HOH H 6 106 37 HOH HOH . AA 4 HOH H 7 107 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . O 3 28.049 -18.659 -7.649 1 56.72 ? P PO4 100 E 1 HETATM 2 O O1 PO4 . . . O 3 29.518 -18.314 -8.102 1 62.34 ? O1 PO4 100 E 1 HETATM 3 O O2 PO4 . . . O 3 27.047 -18.112 -8.724 1 63.37 ? O2 PO4 100 E 1 HETATM 4 O O3 PO4 . . . O 3 27.871 -20.223 -7.537 1 63.39 ? O3 PO4 100 E 1 HETATM 5 O O4 PO4 . . . O 3 27.719 -18.014 -6.251 1 62.74 ? O4 PO4 100 E 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #