data_3TM6
#
_model_server_result.job_id            1JL6kOTRM1jNbRWlBIAePw 
_model_server_result.datetime_utc      '2024-11-22 00:08:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3tm6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":100}' 
#
_entry.id    3TM6 
#
_exptl.entry_id    3TM6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          115.67 
_cell.angle_gamma         90 
_cell.entry_id            3TM6 
_cell.length_a            90.102 
_cell.length_b            56.272 
_cell.length_c            96.374 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3TM6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M,N,T,U,V,W 1 1 
E,F,G,H,O,P,Q,R,S,X,Y,Z,AA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 N N N 
? 2 Q N N 
? 2 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 25 1_555 A SG CYS 81 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 A SG CYS 51 A CYS 50 1_555 B SG CYS 51 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 C SG CYS 26 C CYS 25 1_555 C SG CYS 81 C CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf5 C SG CYS 51 C CYS 50 1_555 D SG CYS 51 D CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf6 D SG CYS 26 D CYS 25 1_555 D SG CYS 81 D CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf7 E SG CYS 26 E CYS 25 1_555 E SG CYS 81 E CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf8 E SG CYS 51 E CYS 50 1_555 F SG CYS 51 F CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf9 F SG CYS 26 F CYS 25 1_555 F SG CYS 81 F CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf10 G SG CYS 26 G CYS 25 1_555 G SG CYS 81 G CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf11 G SG CYS 51 G CYS 50 1_555 H SG CYS 51 H CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf12 H SG CYS 26 H CYS 25 1_555 H SG CYS 81 H CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 237 n n 
C1 C2 PEG sing 238 n n 
C1 H11 PEG sing 239 n n 
C1 H12 PEG sing 240 n n 
O1 HO1 PEG sing 241 n n 
C2 O2 PEG sing 242 n n 
C2 H21 PEG sing 243 n n 
C2 H22 PEG sing 244 n n 
O2 C3 PEG sing 245 n n 
C3 C4 PEG sing 246 n n 
C3 H31 PEG sing 247 n n 
C3 H32 PEG sing 248 n n 
C4 O4 PEG sing 249 n n 
C4 H41 PEG sing 250 n n 
C4 H42 PEG sing 251 n n 
O4 HO4 PEG sing 252 n n 
#
_atom_sites.entry_id                     3TM6 
_atom_sites.fract_transf_matrix[1][1]    0.011099 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005334 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017771 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011512 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 PEG A 1 201 201 PEG PEG . 
J 2 PEG B 1 200 200 PEG PEG . 
K 3 PO4 B 1 100 1 PO4 PO4 . 
L 3 PO4 C 1 100 2 PO4 PO4 . 
M 3 PO4 C 1 101 6 PO4 PO4 . 
N 2 PEG D 1 200 200 PEG PEG . 
O 3 PO4 E 1 100 3 PO4 PO4 . 
P 3 PO4 F 1 100 7 PO4 PO4 . 
Q 2 PEG G 1 200 200 PEG PEG . 
R 2 PEG G 1 100 200 PEG PEG . 
S 3 PO4 H 1 100 5 PO4 PO4 . 
T 4 HOH A 1 100 13 HOH HOH . 
T 4 HOH A 2 101 20 HOH HOH . 
T 4 HOH A 3 102 30 HOH HOH . 
T 4 HOH A 4 103 31 HOH HOH . 
T 4 HOH A 5 104 45 HOH HOH . 
T 4 HOH A 6 105 46 HOH HOH . 
T 4 HOH A 7 106 48 HOH HOH . 
T 4 HOH A 8 107 49 HOH HOH . 
T 4 HOH A 9 108 50 HOH HOH . 
T 4 HOH A 10 109 52 HOH HOH . 
T 4 HOH A 11 110 53 HOH HOH . 
T 4 HOH A 12 111 54 HOH HOH . 
T 4 HOH A 13 112 56 HOH HOH . 
T 4 HOH A 14 113 57 HOH HOH . 
T 4 HOH A 15 114 61 HOH HOH . 
T 4 HOH A 16 115 62 HOH HOH . 
T 4 HOH A 17 116 63 HOH HOH . 
U 4 HOH B 1 101 11 HOH HOH . 
U 4 HOH B 2 102 33 HOH HOH . 
U 4 HOH B 3 103 34 HOH HOH . 
U 4 HOH B 4 104 47 HOH HOH . 
U 4 HOH B 5 105 105 HOH HOH . 
U 4 HOH B 6 106 55 HOH HOH . 
U 4 HOH B 7 107 82 HOH HOH . 
U 4 HOH B 8 108 83 HOH HOH . 
U 4 HOH B 9 109 109 HOH HOH . 
U 4 HOH B 10 110 84 HOH HOH . 
U 4 HOH B 11 111 111 HOH HOH . 
U 4 HOH B 12 112 112 HOH HOH . 
U 4 HOH B 13 113 85 HOH HOH . 
U 4 HOH B 14 114 86 HOH HOH . 
U 4 HOH B 15 115 87 HOH HOH . 
V 4 HOH C 1 102 1 HOH HOH . 
V 4 HOH C 2 103 17 HOH HOH . 
V 4 HOH C 3 104 25 HOH HOH . 
V 4 HOH C 4 105 26 HOH HOH . 
V 4 HOH C 5 106 32 HOH HOH . 
V 4 HOH C 6 107 39 HOH HOH . 
V 4 HOH C 7 108 58 HOH HOH . 
V 4 HOH C 8 109 60 HOH HOH . 
V 4 HOH C 9 110 64 HOH HOH . 
V 4 HOH C 10 111 65 HOH HOH . 
V 4 HOH C 11 112 66 HOH HOH . 
V 4 HOH C 12 113 67 HOH HOH . 
V 4 HOH C 13 114 68 HOH HOH . 
V 4 HOH C 14 115 69 HOH HOH . 
V 4 HOH C 15 116 70 HOH HOH . 
V 4 HOH C 16 117 71 HOH HOH . 
W 4 HOH D 1 100 3 HOH HOH . 
W 4 HOH D 2 101 27 HOH HOH . 
W 4 HOH D 3 102 29 HOH HOH . 
W 4 HOH D 4 103 35 HOH HOH . 
W 4 HOH D 5 104 36 HOH HOH . 
W 4 HOH D 6 105 51 HOH HOH . 
W 4 HOH D 7 106 106 HOH HOH . 
W 4 HOH D 8 107 59 HOH HOH . 
W 4 HOH D 9 108 88 HOH HOH . 
W 4 HOH D 10 109 89 HOH HOH . 
W 4 HOH D 11 110 90 HOH HOH . 
X 4 HOH E 1 101 4 HOH HOH . 
X 4 HOH E 2 102 5 HOH HOH . 
X 4 HOH E 3 103 6 HOH HOH . 
X 4 HOH E 4 104 8 HOH HOH . 
X 4 HOH E 5 105 44 HOH HOH . 
X 4 HOH E 6 106 72 HOH HOH . 
X 4 HOH E 7 107 73 HOH HOH . 
X 4 HOH E 8 108 75 HOH HOH . 
X 4 HOH E 9 109 76 HOH HOH . 
X 4 HOH E 10 110 77 HOH HOH . 
X 4 HOH E 11 111 80 HOH HOH . 
X 4 HOH E 12 112 81 HOH HOH . 
Y 4 HOH F 1 101 10 HOH HOH . 
Y 4 HOH F 2 102 12 HOH HOH . 
Y 4 HOH F 3 103 15 HOH HOH . 
Y 4 HOH F 4 104 18 HOH HOH . 
Y 4 HOH F 5 105 19 HOH HOH . 
Y 4 HOH F 6 106 21 HOH HOH . 
Y 4 HOH F 7 107 38 HOH HOH . 
Y 4 HOH F 8 108 40 HOH HOH . 
Y 4 HOH F 9 109 43 HOH HOH . 
Y 4 HOH F 10 110 110 HOH HOH . 
Y 4 HOH F 11 111 78 HOH HOH . 
Y 4 HOH F 12 112 79 HOH HOH . 
Y 4 HOH F 13 113 99 HOH HOH . 
Y 4 HOH F 14 114 92 HOH HOH . 
Y 4 HOH F 15 115 93 HOH HOH . 
Y 4 HOH F 16 116 94 HOH HOH . 
Y 4 HOH F 17 117 95 HOH HOH . 
Y 4 HOH F 18 118 96 HOH HOH . 
Y 4 HOH F 19 119 91 HOH HOH . 
Z 4 HOH G 1 101 2 HOH HOH . 
Z 4 HOH G 2 102 7 HOH HOH . 
Z 4 HOH G 3 103 9 HOH HOH . 
Z 4 HOH G 4 104 16 HOH HOH . 
Z 4 HOH G 5 105 22 HOH HOH . 
Z 4 HOH G 6 106 23 HOH HOH . 
Z 4 HOH G 7 107 107 HOH HOH . 
Z 4 HOH G 8 108 108 HOH HOH . 
Z 4 HOH G 9 109 24 HOH HOH . 
Z 4 HOH G 10 110 28 HOH HOH . 
Z 4 HOH G 11 111 41 HOH HOH . 
Z 4 HOH G 12 112 42 HOH HOH . 
Z 4 HOH G 13 113 74 HOH HOH . 
Z 4 HOH G 14 114 97 HOH HOH . 
Z 4 HOH G 15 115 100 HOH HOH . 
AA 4 HOH H 1 101 101 HOH HOH . 
AA 4 HOH H 2 102 102 HOH HOH . 
AA 4 HOH H 3 103 103 HOH HOH . 
AA 4 HOH H 4 104 104 HOH HOH . 
AA 4 HOH H 5 105 14 HOH HOH . 
AA 4 HOH H 6 106 37 HOH HOH . 
AA 4 HOH H 7 107 98 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . R 2 27.9 -0.794 7.682 1 36.59 ? C1 PEG 100 G 1 
HETATM 2 O O1 PEG . . . R 2 28.383 0.435 8.137 1 40.47 ? O1 PEG 100 G 1 
HETATM 3 C C2 PEG . . . R 2 26.776 -1.27 8.522 1 36.65 ? C2 PEG 100 G 1 
HETATM 4 O O2 PEG . . . R 2 27.196 -1.452 9.867 1 37.82 ? O2 PEG 100 G 1 
HETATM 5 C C3 PEG . . . R 2 26.229 -2.124 10.66 1 38.53 ? C3 PEG 100 G 1 
HETATM 6 C C4 PEG . . . R 2 26.172 -1.545 12.03 1 37.47 ? C4 PEG 100 G 1 
HETATM 7 O O4 PEG . . . R 2 25.795 -0.187 11.981 1 41.66 ? O4 PEG 100 G 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           7 
#