data_3TME # _model_server_result.job_id QBk_r5-LF9-Dv2hNbvdXdw _model_server_result.datetime_utc '2024-10-11 10:20:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tme # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":151}' # _entry.id 3TME # _exptl.entry_id 3TME _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-2-METHYLPENTANE-2,4-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TME _cell.length_a 31.12 _cell.length_b 60.109 _cell.length_c 78.707 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TME _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MRD _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-2-METHYLPENTANE-2,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MRD sing 224 n n C1 H1C1 MRD sing 225 n n C1 H1C2 MRD sing 226 n n C1 H1C3 MRD sing 227 n n C2 O2 MRD sing 228 n n C2 CM MRD sing 229 n n C2 C3 MRD sing 230 n n O2 H2 MRD sing 231 n n CM HMC1 MRD sing 232 n n CM HMC2 MRD sing 233 n n CM HMC3 MRD sing 234 n n C3 C4 MRD sing 235 n n C3 H3C1 MRD sing 236 n n C3 H3C2 MRD sing 237 n n C4 O4 MRD sing 238 n n C4 C5 MRD sing 239 n n C4 H4 MRD sing 240 n n O4 HA MRD sing 241 n n C5 H5C1 MRD sing 242 n n C5 H5C2 MRD sing 243 n n C5 H5C3 MRD sing 244 n n # _atom_sites.entry_id 3TME _atom_sites.fract_transf_matrix[1][1] 0.032134 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016636 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012705 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 THP A 1 150 142 THP THP . C 3 MRD A 1 151 1 MRD MPD . D 4 HOH A 1 44 44 HOH HOH . D 4 HOH A 2 48 48 HOH HOH . D 4 HOH A 3 49 49 HOH HOH . D 4 HOH A 4 152 1 HOH HOH . D 4 HOH A 5 153 2 HOH HOH . D 4 HOH A 6 154 3 HOH HOH . D 4 HOH A 7 155 4 HOH HOH . D 4 HOH A 8 156 5 HOH HOH . D 4 HOH A 9 157 6 HOH HOH . D 4 HOH A 10 158 7 HOH HOH . D 4 HOH A 11 159 8 HOH HOH . D 4 HOH A 12 160 9 HOH HOH . D 4 HOH A 13 161 10 HOH HOH . D 4 HOH A 14 162 11 HOH HOH . D 4 HOH A 15 163 1 HOH HOH . D 4 HOH A 16 164 2 HOH HOH . D 4 HOH A 17 165 5 HOH HOH . D 4 HOH A 18 166 7 HOH HOH . D 4 HOH A 19 167 8 HOH HOH . D 4 HOH A 20 168 9 HOH HOH . D 4 HOH A 21 169 11 HOH HOH . D 4 HOH A 22 170 12 HOH HOH . D 4 HOH A 23 171 13 HOH HOH . D 4 HOH A 24 172 15 HOH HOH . D 4 HOH A 25 173 16 HOH HOH . D 4 HOH A 26 174 17 HOH HOH . D 4 HOH A 27 175 18 HOH HOH . D 4 HOH A 28 176 20 HOH HOH . D 4 HOH A 29 177 22 HOH HOH . D 4 HOH A 30 178 23 HOH HOH . D 4 HOH A 31 179 24 HOH HOH . D 4 HOH A 32 180 25 HOH HOH . D 4 HOH A 33 181 26 HOH HOH . D 4 HOH A 34 182 27 HOH HOH . D 4 HOH A 35 183 28 HOH HOH . D 4 HOH A 36 184 30 HOH HOH . D 4 HOH A 37 185 31 HOH HOH . D 4 HOH A 38 186 32 HOH HOH . D 4 HOH A 39 187 34 HOH HOH . D 4 HOH A 40 188 35 HOH HOH . D 4 HOH A 41 189 39 HOH HOH . D 4 HOH A 42 190 40 HOH HOH . D 4 HOH A 43 191 41 HOH HOH . D 4 HOH A 44 192 42 HOH HOH . D 4 HOH A 45 193 43 HOH HOH . D 4 HOH A 46 194 51 HOH HOH . D 4 HOH A 47 195 54 HOH HOH . D 4 HOH A 48 196 55 HOH HOH . D 4 HOH A 49 197 56 HOH HOH . D 4 HOH A 50 198 59 HOH HOH . D 4 HOH A 51 199 60 HOH HOH . D 4 HOH A 52 200 61 HOH HOH . D 4 HOH A 53 201 63 HOH HOH . D 4 HOH A 54 202 66 HOH HOH . D 4 HOH A 55 203 67 HOH HOH . D 4 HOH A 56 204 70 HOH HOH . D 4 HOH A 57 205 75 HOH HOH . D 4 HOH A 58 206 77 HOH HOH . D 4 HOH A 59 207 83 HOH HOH . D 4 HOH A 60 208 85 HOH HOH . D 4 HOH A 61 209 87 HOH HOH . D 4 HOH A 62 210 88 HOH HOH . D 4 HOH A 63 211 91 HOH HOH . D 4 HOH A 64 212 97 HOH HOH . D 4 HOH A 65 213 98 HOH HOH . D 4 HOH A 66 214 102 HOH HOH . D 4 HOH A 67 215 117 HOH HOH . D 4 HOH A 68 216 123 HOH HOH . D 4 HOH A 69 217 143 HOH HOH . D 4 HOH A 70 218 1 HOH HOH . D 4 HOH A 71 219 2 HOH HOH . D 4 HOH A 72 220 3 HOH HOH . D 4 HOH A 73 221 4 HOH HOH . D 4 HOH A 74 222 5 HOH HOH . D 4 HOH A 75 223 6 HOH HOH . D 4 HOH A 76 224 7 HOH HOH . D 4 HOH A 77 225 8 HOH HOH . D 4 HOH A 78 226 9 HOH HOH . D 4 HOH A 79 227 10 HOH HOH . D 4 HOH A 80 228 11 HOH HOH . D 4 HOH A 81 229 12 HOH HOH . D 4 HOH A 82 230 13 HOH HOH . D 4 HOH A 83 231 14 HOH HOH . D 4 HOH A 84 232 15 HOH HOH . D 4 HOH A 85 233 1 HOH HOH . D 4 HOH A 86 234 2 HOH HOH . D 4 HOH A 87 235 3 HOH HOH . D 4 HOH A 88 236 4 HOH HOH . D 4 HOH A 89 237 5 HOH HOH . D 4 HOH A 90 238 6 HOH HOH . D 4 HOH A 91 239 7 HOH HOH . D 4 HOH A 92 240 8 HOH HOH . D 4 HOH A 93 241 9 HOH HOH . D 4 HOH A 94 242 10 HOH HOH . D 4 HOH A 95 243 11 HOH HOH . D 4 HOH A 96 244 12 HOH HOH . D 4 HOH A 97 245 13 HOH HOH . D 4 HOH A 98 246 1 HOH HOH . D 4 HOH A 99 247 2 HOH HOH . D 4 HOH A 100 248 4 HOH HOH . D 4 HOH A 101 249 5 HOH HOH . D 4 HOH A 102 250 1 HOH HOH . D 4 HOH A 103 251 2 HOH HOH . D 4 HOH A 104 252 3 HOH HOH . D 4 HOH A 105 253 4 HOH HOH . D 4 HOH A 106 254 5 HOH HOH . D 4 HOH A 107 255 1 HOH HOH . D 4 HOH A 108 256 2 HOH HOH . D 4 HOH A 109 257 3 HOH HOH . D 4 HOH A 110 258 4 HOH HOH . D 4 HOH A 111 259 5 HOH HOH . D 4 HOH A 112 260 6 HOH HOH . D 4 HOH A 113 261 7 HOH HOH . D 4 HOH A 114 262 2 HOH HOH . D 4 HOH A 115 263 1 HOH HOH . D 4 HOH A 116 264 2 HOH HOH . D 4 HOH A 117 265 3 HOH HOH . D 4 HOH A 118 266 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRD . . . C 3 15.417 -17.776 -11.258 1 29.8 ? C1 MRD 151 A 1 HETATM 2 C C2 MRD . . . C 3 14.637 -18.532 -12.329 1 34.84 ? C2 MRD 151 A 1 HETATM 3 O O2 MRD . . . C 3 15.072 -18.09 -13.636 1 38.24 ? O2 MRD 151 A 1 HETATM 4 C CM MRD . . . C 3 14.945 -20.019 -12.187 1 31.46 ? CM MRD 151 A 1 HETATM 5 C C3 MRD . . . C 3 13.137 -18.302 -12.294 1 34.16 ? C3 MRD 151 A 1 HETATM 6 C C4 MRD . . . C 3 12.742 -16.832 -12.427 1 30.05 ? C4 MRD 151 A 1 HETATM 7 O O4 MRD . . . C 3 13.209 -16.289 -13.64 1 36.3 ? O4 MRD 151 A 1 HETATM 8 C C5 MRD . . . C 3 13.287 -15.982 -11.296 1 22.47 ? C5 MRD 151 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 8 #