data_3TMN # _model_server_result.job_id fMjQoHU7XH3hX3tPTZsEJg _model_server_result.datetime_utc '2024-12-24 03:37:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tmn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":319}' # _entry.id 3TMN # _exptl.entry_id 3TMN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3TMN _cell.length_a 94.1 _cell.length_b 94.1 _cell.length_c 131.4 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TMN _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C VAL . E VAL 317 1_555 C N TRP . E TRP 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A OD1 ASP 57 E ASP 57 1_555 F CA CA . E CA 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc2 A OD2 ASP 57 E ASP 57 1_555 F CA CA . E CA 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc3 A OD1 ASP 59 E ASP 59 1_555 F CA CA . E CA 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc4 A O GLN 61 E GLN 61 1_555 F CA CA . E CA 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc5 A OD1 ASP 138 E ASP 138 1_555 D CA CA . E CA 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc6 A NE2 HIS 142 E HIS 142 1_555 H ZN ZN . E ZN 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc7 A NE2 HIS 146 E HIS 146 1_555 H ZN ZN . E ZN 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc8 A OE1 GLU 166 E GLU 166 1_555 H ZN ZN . E ZN 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc9 A OE1 GLU 177 E GLU 177 1_555 D CA CA . E CA 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc10 A OE2 GLU 177 E GLU 177 1_555 D CA CA . E CA 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? metalc ? metalc11 A OE2 GLU 177 E GLU 177 1_555 E CA CA . E CA 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc12 A O ASN 183 E ASN 183 1_555 E CA CA . E CA 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc13 A OD2 ASP 185 E ASP 185 1_555 D CA CA . E CA 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc14 A OD1 ASP 185 E ASP 185 1_555 E CA CA . E CA 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc15 A O GLU 187 E GLU 187 1_555 D CA CA . E CA 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc16 A OE1 GLU 190 E GLU 190 1_555 D CA CA . E CA 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc17 A OE2 GLU 190 E GLU 190 1_555 D CA CA . E CA 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc18 A OE2 GLU 190 E GLU 190 1_555 E CA CA . E CA 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc19 A O TYR 193 E TYR 193 1_555 G CA CA . E CA 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc20 A O THR 194 E THR 194 1_555 G CA CA . E CA 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc21 A OG1 THR 194 E THR 194 1_555 G CA CA . E CA 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc22 A O ILE 197 E ILE 197 1_555 G CA CA . E CA 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc23 A OD1 ASP 200 E ASP 200 1_555 G CA CA . E CA 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc24 D CA CA . E CA 319 1_555 I O HOH . E HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc25 E CA CA . E CA 320 1_555 I O HOH . E HOH 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc26 E CA CA . E CA 320 1_555 I O HOH . E HOH 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc27 F CA CA . E CA 321 1_555 I O HOH . E HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc28 F CA CA . E CA 321 1_555 I O HOH . E HOH 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc29 F CA CA . E CA 321 1_555 I O HOH . E HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc30 G CA CA . E CA 322 1_555 I O HOH . E HOH 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc31 G CA CA . E CA 322 1_555 I O HOH . E HOH 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc32 H ZN ZN . E ZN 323 1_555 I O HOH . E HOH 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3TMN _atom_sites.fract_transf_matrix[1][1] 0.010627 _atom_sites.fract_transf_matrix[1][2] 0.006135 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00761 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VAL E 1 317 1 VAL VAL . C 3 TRP E 1 318 2 TRP TRP . D 4 CA E 1 319 317 CA CA . E 4 CA E 1 320 318 CA CA . F 4 CA E 1 321 319 CA CA . G 4 CA E 1 322 320 CA CA . H 5 ZN E 1 323 321 ZN ZN . I 6 HOH E 1 331 331 HOH HOH . I 6 HOH E 2 332 332 HOH HOH . I 6 HOH E 3 334 334 HOH HOH . I 6 HOH E 4 335 335 HOH HOH . I 6 HOH E 5 337 337 HOH HOH . I 6 HOH E 6 338 338 HOH HOH . I 6 HOH E 7 339 339 HOH HOH . I 6 HOH E 8 340 340 HOH HOH . I 6 HOH E 9 341 341 HOH HOH . I 6 HOH E 10 342 342 HOH HOH . I 6 HOH E 11 343 343 HOH HOH . I 6 HOH E 12 344 344 HOH HOH . I 6 HOH E 13 345 345 HOH HOH . I 6 HOH E 14 346 346 HOH HOH . I 6 HOH E 15 347 347 HOH HOH . I 6 HOH E 16 348 348 HOH HOH . I 6 HOH E 17 349 349 HOH HOH . I 6 HOH E 18 350 350 HOH HOH . I 6 HOH E 19 351 351 HOH HOH . I 6 HOH E 20 352 352 HOH HOH . I 6 HOH E 21 353 353 HOH HOH . I 6 HOH E 22 354 354 HOH HOH . I 6 HOH E 23 355 355 HOH HOH . I 6 HOH E 24 356 356 HOH HOH . I 6 HOH E 25 357 357 HOH HOH . I 6 HOH E 26 358 358 HOH HOH . I 6 HOH E 27 359 359 HOH HOH . I 6 HOH E 28 361 361 HOH HOH . I 6 HOH E 29 362 362 HOH HOH . I 6 HOH E 30 366 366 HOH HOH . I 6 HOH E 31 367 367 HOH HOH . I 6 HOH E 32 368 368 HOH HOH . I 6 HOH E 33 370 370 HOH HOH . I 6 HOH E 34 371 371 HOH HOH . I 6 HOH E 35 373 373 HOH HOH . I 6 HOH E 36 374 374 HOH HOH . I 6 HOH E 37 375 375 HOH HOH . I 6 HOH E 38 376 376 HOH HOH . I 6 HOH E 39 377 377 HOH HOH . I 6 HOH E 40 378 378 HOH HOH . I 6 HOH E 41 379 379 HOH HOH . I 6 HOH E 42 380 380 HOH HOH . I 6 HOH E 43 381 381 HOH HOH . I 6 HOH E 44 383 383 HOH HOH . I 6 HOH E 45 384 384 HOH HOH . I 6 HOH E 46 385 385 HOH HOH . I 6 HOH E 47 386 386 HOH HOH . I 6 HOH E 48 387 387 HOH HOH . I 6 HOH E 49 389 389 HOH HOH . I 6 HOH E 50 390 390 HOH HOH . I 6 HOH E 51 391 391 HOH HOH . I 6 HOH E 52 393 393 HOH HOH . I 6 HOH E 53 395 395 HOH HOH . I 6 HOH E 54 397 397 HOH HOH . I 6 HOH E 55 398 398 HOH HOH . I 6 HOH E 56 403 403 HOH HOH . I 6 HOH E 57 404 404 HOH HOH . I 6 HOH E 58 405 405 HOH HOH . I 6 HOH E 59 407 407 HOH HOH . I 6 HOH E 60 408 408 HOH HOH . I 6 HOH E 61 410 410 HOH HOH . I 6 HOH E 62 412 412 HOH HOH . I 6 HOH E 63 413 413 HOH HOH . I 6 HOH E 64 414 414 HOH HOH . I 6 HOH E 65 415 415 HOH HOH . I 6 HOH E 66 416 416 HOH HOH . I 6 HOH E 67 418 418 HOH HOH . I 6 HOH E 68 419 419 HOH HOH . I 6 HOH E 69 420 420 HOH HOH . I 6 HOH E 70 422 422 HOH HOH . I 6 HOH E 71 423 423 HOH HOH . I 6 HOH E 72 424 424 HOH HOH . I 6 HOH E 73 425 425 HOH HOH . I 6 HOH E 74 426 426 HOH HOH . I 6 HOH E 75 427 427 HOH HOH . I 6 HOH E 76 428 428 HOH HOH . I 6 HOH E 77 431 431 HOH HOH . I 6 HOH E 78 433 433 HOH HOH . I 6 HOH E 79 434 434 HOH HOH . I 6 HOH E 80 438 438 HOH HOH . I 6 HOH E 81 439 439 HOH HOH . I 6 HOH E 82 441 441 HOH HOH . I 6 HOH E 83 444 444 HOH HOH . I 6 HOH E 84 445 445 HOH HOH . I 6 HOH E 85 446 446 HOH HOH . I 6 HOH E 86 448 448 HOH HOH . I 6 HOH E 87 450 450 HOH HOH . I 6 HOH E 88 452 452 HOH HOH . I 6 HOH E 89 454 454 HOH HOH . I 6 HOH E 90 455 455 HOH HOH . I 6 HOH E 91 457 457 HOH HOH . I 6 HOH E 92 459 459 HOH HOH . I 6 HOH E 93 461 461 HOH HOH . I 6 HOH E 94 463 463 HOH HOH . I 6 HOH E 95 464 464 HOH HOH . I 6 HOH E 96 465 465 HOH HOH . I 6 HOH E 97 466 466 HOH HOH . I 6 HOH E 98 467 467 HOH HOH . I 6 HOH E 99 468 468 HOH HOH . I 6 HOH E 100 469 469 HOH HOH . I 6 HOH E 101 470 470 HOH HOH . I 6 HOH E 102 471 471 HOH HOH . I 6 HOH E 103 472 472 HOH HOH . I 6 HOH E 104 474 474 HOH HOH . I 6 HOH E 105 475 475 HOH HOH . I 6 HOH E 106 476 476 HOH HOH . I 6 HOH E 107 477 477 HOH HOH . I 6 HOH E 108 478 478 HOH HOH . I 6 HOH E 109 479 479 HOH HOH . I 6 HOH E 110 480 480 HOH HOH . I 6 HOH E 111 481 481 HOH HOH . I 6 HOH E 112 482 482 HOH HOH . I 6 HOH E 113 483 483 HOH HOH . I 6 HOH E 114 484 484 HOH HOH . I 6 HOH E 115 485 485 HOH HOH . I 6 HOH E 116 486 486 HOH HOH . I 6 HOH E 117 487 487 HOH HOH . I 6 HOH E 118 488 488 HOH HOH . I 6 HOH E 119 489 489 HOH HOH . I 6 HOH E 120 490 490 HOH HOH . I 6 HOH E 121 491 491 HOH HOH . I 6 HOH E 122 493 493 HOH HOH . I 6 HOH E 123 494 494 HOH HOH . I 6 HOH E 124 495 495 HOH HOH . I 6 HOH E 125 496 496 HOH HOH . I 6 HOH E 126 501 501 HOH HOH . I 6 HOH E 127 502 502 HOH HOH . I 6 HOH E 128 503 503 HOH HOH . I 6 HOH E 129 504 504 HOH HOH . I 6 HOH E 130 505 505 HOH HOH . I 6 HOH E 131 506 506 HOH HOH . I 6 HOH E 132 507 507 HOH HOH . I 6 HOH E 133 508 508 HOH HOH . I 6 HOH E 134 509 509 HOH HOH . I 6 HOH E 135 510 510 HOH HOH . I 6 HOH E 136 512 512 HOH HOH . I 6 HOH E 137 513 513 HOH HOH . I 6 HOH E 138 514 514 HOH HOH . I 6 HOH E 139 515 515 HOH HOH . I 6 HOH E 140 516 516 HOH HOH . I 6 HOH E 141 518 518 HOH HOH . I 6 HOH E 142 519 519 HOH HOH . I 6 HOH E 143 520 520 HOH HOH . I 6 HOH E 144 521 521 HOH HOH . I 6 HOH E 145 523 523 HOH HOH . I 6 HOH E 146 524 524 HOH HOH . I 6 HOH E 147 525 525 HOH HOH . I 6 HOH E 148 526 526 HOH HOH . I 6 HOH E 149 527 527 HOH HOH . I 6 HOH E 150 528 528 HOH HOH . I 6 HOH E 151 530 530 HOH HOH . I 6 HOH E 152 531 531 HOH HOH . I 6 HOH E 153 532 532 HOH HOH . I 6 HOH E 154 534 534 HOH HOH . I 6 HOH E 155 535 535 HOH HOH . I 6 HOH E 156 536 536 HOH HOH . I 6 HOH E 157 537 537 HOH HOH . I 6 HOH E 158 538 538 HOH HOH . I 6 HOH E 159 539 539 HOH HOH . I 6 HOH E 160 540 540 HOH HOH . I 6 HOH E 161 542 542 HOH HOH . I 6 HOH E 162 543 543 HOH HOH . I 6 HOH E 163 544 544 HOH HOH . I 6 HOH E 164 800 800 HOH HOH . I 6 HOH E 165 802 802 HOH HOH . I 6 HOH E 166 803 803 HOH HOH . I 6 HOH E 167 804 804 HOH HOH . I 6 HOH E 168 805 805 HOH HOH . I 6 HOH E 169 806 806 HOH HOH . I 6 HOH E 170 807 807 HOH HOH . I 6 HOH E 171 808 808 HOH HOH . I 6 HOH E 172 809 809 HOH HOH . I 6 HOH E 173 810 810 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 41.976 _atom_site.Cartn_y 49.835 _atom_site.Cartn_z 4.877 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 10.75 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 319 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #