data_3TND # _model_server_result.job_id RwxBHE7tb922Q2E_uzPEvw _model_server_result.datetime_utc '2024-12-22 06:33:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tnd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":133}' # _entry.id 3TND # _exptl.entry_id 3TND _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3TND _cell.length_a 91.403 _cell.length_b 91.403 _cell.length_c 549.09 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TND _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 K N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 V O HOH . A HOH 171 1_555 J NA NA . B NA 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.168 ? metalc ? metalc2 J NA NA . B NA 82 1_555 W O HOH . B HOH 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? metalc ? metalc3 X O HOH . C HOH 149 1_555 L NA NA . D NA 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.06 ? metalc ? metalc4 L NA NA . D NA 82 1_555 Y O HOH . D HOH 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.024 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 3TND _atom_sites.fract_transf_matrix[1][1] 0.010941 _atom_sites.fract_transf_matrix[1][2] 0.006317 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012633 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 SO4 A 1 133 10 SO4 SO4 . J 4 NA B 1 82 2 NA NA . K 3 SO4 B 1 83 3 SO4 SO4 . L 4 NA D 1 82 1 NA NA . M 3 SO4 D 1 83 2 SO4 SO4 . N 3 SO4 D 1 84 4 SO4 SO4 . O 3 SO4 E 1 133 11 SO4 SO4 . P 3 SO4 F 1 82 6 SO4 SO4 . Q 3 SO4 G 1 133 7 SO4 SO4 . R 3 SO4 H 1 82 1 SO4 SO4 . S 3 SO4 H 1 83 5 SO4 SO4 . T 3 SO4 H 1 84 8 SO4 SO4 . U 3 SO4 H 1 85 9 SO4 SO4 . V 5 HOH A 1 134 1 HOH HOH . V 5 HOH A 2 135 4 HOH HOH . V 5 HOH A 3 136 5 HOH HOH . V 5 HOH A 4 137 10 HOH HOH . V 5 HOH A 5 138 138 HOH HOH . V 5 HOH A 6 139 11 HOH HOH . V 5 HOH A 7 140 12 HOH HOH . V 5 HOH A 8 141 141 HOH HOH . V 5 HOH A 9 142 142 HOH HOH . V 5 HOH A 10 143 13 HOH HOH . V 5 HOH A 11 144 22 HOH HOH . V 5 HOH A 12 145 23 HOH HOH . V 5 HOH A 13 146 146 HOH HOH . V 5 HOH A 14 147 29 HOH HOH . V 5 HOH A 15 148 31 HOH HOH . V 5 HOH A 16 149 33 HOH HOH . V 5 HOH A 17 150 150 HOH HOH . V 5 HOH A 18 151 46 HOH HOH . V 5 HOH A 19 152 48 HOH HOH . V 5 HOH A 20 153 51 HOH HOH . V 5 HOH A 21 154 154 HOH HOH . V 5 HOH A 22 155 155 HOH HOH . V 5 HOH A 23 156 156 HOH HOH . V 5 HOH A 24 157 157 HOH HOH . V 5 HOH A 25 158 58 HOH HOH . V 5 HOH A 26 159 159 HOH HOH . V 5 HOH A 27 160 160 HOH HOH . V 5 HOH A 28 161 161 HOH HOH . V 5 HOH A 29 162 162 HOH HOH . V 5 HOH A 30 163 163 HOH HOH . V 5 HOH A 31 164 67 HOH HOH . V 5 HOH A 32 165 70 HOH HOH . V 5 HOH A 33 166 91 HOH HOH . V 5 HOH A 34 167 111 HOH HOH . V 5 HOH A 35 168 112 HOH HOH . V 5 HOH A 36 169 117 HOH HOH . V 5 HOH A 37 170 118 HOH HOH . V 5 HOH A 38 171 119 HOH HOH . V 5 HOH A 39 172 125 HOH HOH . V 5 HOH A 40 173 126 HOH HOH . V 5 HOH A 41 174 131 HOH HOH . V 5 HOH A 42 175 132 HOH HOH . W 5 HOH B 1 84 24 HOH HOH . W 5 HOH B 2 85 63 HOH HOH . W 5 HOH B 3 96 96 HOH HOH . W 5 HOH B 4 97 97 HOH HOH . W 5 HOH B 5 100 100 HOH HOH . W 5 HOH B 6 109 109 HOH HOH . W 5 HOH B 7 110 110 HOH HOH . W 5 HOH B 8 116 116 HOH HOH . W 5 HOH B 9 120 120 HOH HOH . W 5 HOH B 10 121 121 HOH HOH . W 5 HOH B 11 122 122 HOH HOH . W 5 HOH B 12 133 133 HOH HOH . W 5 HOH B 13 134 134 HOH HOH . W 5 HOH B 14 135 135 HOH HOH . W 5 HOH B 15 136 136 HOH HOH . W 5 HOH B 16 140 140 HOH HOH . W 5 HOH B 17 158 158 HOH HOH . W 5 HOH B 18 164 164 HOH HOH . W 5 HOH B 19 165 165 HOH HOH . W 5 HOH B 20 166 166 HOH HOH . W 5 HOH B 21 168 168 HOH HOH . W 5 HOH B 22 169 169 HOH HOH . W 5 HOH B 23 170 170 HOH HOH . X 5 HOH C 1 133 2 HOH HOH . X 5 HOH C 2 134 14 HOH HOH . X 5 HOH C 3 135 15 HOH HOH . X 5 HOH C 4 136 17 HOH HOH . X 5 HOH C 5 137 18 HOH HOH . X 5 HOH C 6 138 20 HOH HOH . X 5 HOH C 7 139 21 HOH HOH . X 5 HOH C 8 140 34 HOH HOH . X 5 HOH C 9 141 38 HOH HOH . X 5 HOH C 10 142 40 HOH HOH . X 5 HOH C 11 143 41 HOH HOH . X 5 HOH C 12 144 53 HOH HOH . X 5 HOH C 13 145 66 HOH HOH . X 5 HOH C 14 146 92 HOH HOH . X 5 HOH C 15 147 147 HOH HOH . X 5 HOH C 16 148 148 HOH HOH . X 5 HOH C 17 149 123 HOH HOH . X 5 HOH C 18 150 127 HOH HOH . X 5 HOH C 19 151 128 HOH HOH . X 5 HOH C 20 152 152 HOH HOH . X 5 HOH C 21 153 129 HOH HOH . X 5 HOH C 22 167 167 HOH HOH . X 5 HOH C 23 171 171 HOH HOH . X 5 HOH C 24 173 173 HOH HOH . X 5 HOH C 25 174 174 HOH HOH . X 5 HOH C 26 175 175 HOH HOH . X 5 HOH C 27 176 176 HOH HOH . X 5 HOH C 28 177 177 HOH HOH . X 5 HOH C 29 178 178 HOH HOH . X 5 HOH C 30 179 179 HOH HOH . X 5 HOH C 31 182 182 HOH HOH . X 5 HOH C 32 183 183 HOH HOH . X 5 HOH C 33 184 184 HOH HOH . X 5 HOH C 34 187 187 HOH HOH . X 5 HOH C 35 205 205 HOH HOH . Y 5 HOH D 1 85 19 HOH HOH . Y 5 HOH D 2 86 28 HOH HOH . Y 5 HOH D 3 93 93 HOH HOH . Y 5 HOH D 4 107 107 HOH HOH . Y 5 HOH D 5 108 108 HOH HOH . Y 5 HOH D 6 115 115 HOH HOH . Y 5 HOH D 7 124 124 HOH HOH . Y 5 HOH D 8 151 151 HOH HOH . Y 5 HOH D 9 172 172 HOH HOH . Y 5 HOH D 10 180 180 HOH HOH . Y 5 HOH D 11 181 181 HOH HOH . Y 5 HOH D 12 188 188 HOH HOH . Y 5 HOH D 13 189 189 HOH HOH . Y 5 HOH D 14 190 190 HOH HOH . Z 5 HOH E 1 134 6 HOH HOH . Z 5 HOH E 2 135 8 HOH HOH . Z 5 HOH E 3 136 25 HOH HOH . Z 5 HOH E 4 137 50 HOH HOH . Z 5 HOH E 5 138 65 HOH HOH . Z 5 HOH E 6 139 69 HOH HOH . Z 5 HOH E 7 140 95 HOH HOH . Z 5 HOH E 8 141 106 HOH HOH . Z 5 HOH E 9 191 191 HOH HOH . Z 5 HOH E 10 192 192 HOH HOH . Z 5 HOH E 11 195 195 HOH HOH . Z 5 HOH E 12 196 196 HOH HOH . Z 5 HOH E 13 197 197 HOH HOH . Z 5 HOH E 14 198 198 HOH HOH . Z 5 HOH E 15 199 199 HOH HOH . Z 5 HOH E 16 200 200 HOH HOH . Z 5 HOH E 17 201 201 HOH HOH . Z 5 HOH E 18 202 202 HOH HOH . Z 5 HOH E 19 203 203 HOH HOH . Z 5 HOH E 20 204 204 HOH HOH . AA 5 HOH F 1 83 16 HOH HOH . AA 5 HOH F 2 84 72 HOH HOH . AA 5 HOH F 3 85 73 HOH HOH . AA 5 HOH F 4 98 98 HOH HOH . AA 5 HOH F 5 105 105 HOH HOH . AA 5 HOH F 6 143 143 HOH HOH . AA 5 HOH F 7 144 144 HOH HOH . AA 5 HOH F 8 193 193 HOH HOH . AA 5 HOH F 9 194 194 HOH HOH . BA 5 HOH G 1 134 3 HOH HOH . BA 5 HOH G 2 135 7 HOH HOH . BA 5 HOH G 3 136 9 HOH HOH . BA 5 HOH G 4 137 137 HOH HOH . BA 5 HOH G 5 138 27 HOH HOH . BA 5 HOH G 6 139 139 HOH HOH . BA 5 HOH G 7 140 35 HOH HOH . BA 5 HOH G 8 141 36 HOH HOH . BA 5 HOH G 9 142 37 HOH HOH . BA 5 HOH G 10 143 39 HOH HOH . BA 5 HOH G 11 144 42 HOH HOH . BA 5 HOH G 12 145 145 HOH HOH . BA 5 HOH G 13 146 43 HOH HOH . BA 5 HOH G 14 147 44 HOH HOH . BA 5 HOH G 15 148 45 HOH HOH . BA 5 HOH G 16 149 47 HOH HOH . BA 5 HOH G 17 150 49 HOH HOH . BA 5 HOH G 18 151 52 HOH HOH . BA 5 HOH G 19 152 56 HOH HOH . BA 5 HOH G 20 153 57 HOH HOH . BA 5 HOH G 21 154 59 HOH HOH . BA 5 HOH G 22 155 60 HOH HOH . BA 5 HOH G 23 156 62 HOH HOH . BA 5 HOH G 24 157 64 HOH HOH . BA 5 HOH G 25 158 71 HOH HOH . BA 5 HOH G 26 159 75 HOH HOH . BA 5 HOH G 27 160 76 HOH HOH . BA 5 HOH G 28 161 77 HOH HOH . BA 5 HOH G 29 162 78 HOH HOH . BA 5 HOH G 30 163 80 HOH HOH . BA 5 HOH G 31 164 81 HOH HOH . BA 5 HOH G 32 165 82 HOH HOH . BA 5 HOH G 33 166 83 HOH HOH . BA 5 HOH G 34 167 84 HOH HOH . BA 5 HOH G 35 168 85 HOH HOH . BA 5 HOH G 36 169 94 HOH HOH . BA 5 HOH G 37 170 99 HOH HOH . BA 5 HOH G 38 171 101 HOH HOH . BA 5 HOH G 39 172 102 HOH HOH . BA 5 HOH G 40 173 103 HOH HOH . BA 5 HOH G 41 174 104 HOH HOH . BA 5 HOH G 42 175 130 HOH HOH . BA 5 HOH G 43 185 185 HOH HOH . BA 5 HOH G 44 186 186 HOH HOH . CA 5 HOH H 1 86 86 HOH HOH . CA 5 HOH H 2 87 87 HOH HOH . CA 5 HOH H 3 88 88 HOH HOH . CA 5 HOH H 4 89 89 HOH HOH . CA 5 HOH H 5 90 90 HOH HOH . CA 5 HOH H 6 91 26 HOH HOH . CA 5 HOH H 7 92 30 HOH HOH . CA 5 HOH H 8 93 32 HOH HOH . CA 5 HOH H 9 94 54 HOH HOH . CA 5 HOH H 10 95 55 HOH HOH . CA 5 HOH H 11 96 61 HOH HOH . CA 5 HOH H 12 97 68 HOH HOH . CA 5 HOH H 13 98 74 HOH HOH . CA 5 HOH H 14 99 79 HOH HOH . CA 5 HOH H 15 113 113 HOH HOH . CA 5 HOH H 16 114 114 HOH HOH . CA 5 HOH H 17 149 149 HOH HOH . CA 5 HOH H 18 153 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . I 3 22.768 48.773 263.185 1 142.3 ? S SO4 133 A 1 HETATM 2 O O1 SO4 . . . I 3 24.076 48.789 263.847 1 80.1 ? O1 SO4 133 A 1 HETATM 3 O O2 SO4 . . . I 3 22.915 48.151 261.862 1 78.75 ? O2 SO4 133 A 1 HETATM 4 O O3 SO4 . . . I 3 21.823 48.018 264.015 1 107.39 ? O3 SO4 133 A 1 HETATM 5 O O4 SO4 . . . I 3 22.271 50.143 263.037 1 97.91 ? O4 SO4 133 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #