data_3TNG # _model_server_result.job_id MRInA70RGeby2z06XJfM_Q _model_server_result.datetime_utc '2024-12-26 16:05:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tng # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":289}' # _entry.id 3TNG # _exptl.entry_id 3TNG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TNG _cell.length_a 66.488 _cell.length_b 66.488 _cell.length_c 125.133 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TNG _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_645 y+1,x-1,-z 0 1 0 1 0 0 0 0 -1 66.488 -66.488 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 100 A LEU 97 1_555 A N MSE 101 A MSE 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C MSE 101 A MSE 98 1_555 A N HIS 102 A HIS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C ALA 138 A ALA 135 1_555 A N MSE 139 A MSE 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C MSE 139 A MSE 136 1_555 A N ASN 140 A ASN 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 A C LYS 181 A LYS 178 1_555 A N MSE 182 A MSE 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale6 A C MSE 182 A MSE 179 1_555 A N PRO 183 A PRO 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? metalc ? metalc1 A NE2 HIS 160 A HIS 157 1_555 B NI NI . A NI 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc2 A ND1 HIS 194 A HIS 191 1_555 C NI NI . A NI 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3TNG _atom_sites.fract_transf_matrix[1][1] 0.01504 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01504 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007991 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 289 1 NI NI . C 2 NI A 1 290 2 NI NI . D 3 PEG A 1 291 1 PEG PEG . E 3 PEG A 1 292 2 PEG PEG . F 3 PEG A 1 293 3 PEG PEG . G 3 PEG A 1 294 4 PEG PEG . H 3 PEG A 1 295 5 PEG PEG . I 4 HOH A 1 296 1 HOH HOH . I 4 HOH A 2 297 2 HOH HOH . I 4 HOH A 3 298 3 HOH HOH . I 4 HOH A 4 299 4 HOH HOH . I 4 HOH A 5 300 5 HOH HOH . I 4 HOH A 6 301 6 HOH HOH . I 4 HOH A 7 302 7 HOH HOH . I 4 HOH A 8 303 8 HOH HOH . I 4 HOH A 9 304 9 HOH HOH . I 4 HOH A 10 305 10 HOH HOH . I 4 HOH A 11 306 11 HOH HOH . I 4 HOH A 12 307 12 HOH HOH . I 4 HOH A 13 308 13 HOH HOH . I 4 HOH A 14 309 14 HOH HOH . I 4 HOH A 15 310 15 HOH HOH . I 4 HOH A 16 311 16 HOH HOH . I 4 HOH A 17 312 17 HOH HOH . I 4 HOH A 18 313 18 HOH HOH . I 4 HOH A 19 314 19 HOH HOH . I 4 HOH A 20 315 20 HOH HOH . I 4 HOH A 21 316 21 HOH HOH . I 4 HOH A 22 317 22 HOH HOH . I 4 HOH A 23 318 23 HOH HOH . I 4 HOH A 24 319 24 HOH HOH . I 4 HOH A 25 320 25 HOH HOH . I 4 HOH A 26 321 26 HOH HOH . I 4 HOH A 27 322 27 HOH HOH . I 4 HOH A 28 323 28 HOH HOH . I 4 HOH A 29 324 29 HOH HOH . I 4 HOH A 30 325 30 HOH HOH . I 4 HOH A 31 326 31 HOH HOH . I 4 HOH A 32 327 32 HOH HOH . I 4 HOH A 33 328 33 HOH HOH . I 4 HOH A 34 329 34 HOH HOH . I 4 HOH A 35 330 35 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 5.787 _atom_site.Cartn_y -20.141 _atom_site.Cartn_z 12.655 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 66.43 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 289 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #