data_3TNJ # _model_server_result.job_id outRr9GRKJqRuKUlRKLT-Q _model_server_result.datetime_utc '2024-12-26 13:24:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tnj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":149}' # _entry.id 3TNJ # _exptl.entry_id 3TNJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3TNJ _cell.length_a 77.809 _cell.length_b 77.809 _cell.length_c 39.949 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TNJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 3TNJ _atom_sites.fract_transf_matrix[1][1] 0.012852 _atom_sites.fract_transf_matrix[1][2] 0.00742 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01484 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025032 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 149 1 AMP AMP . C 3 HOH A 1 150 1 HOH HOH . C 3 HOH A 2 151 2 HOH HOH . C 3 HOH A 3 152 3 HOH HOH . C 3 HOH A 4 153 4 HOH HOH . C 3 HOH A 5 154 5 HOH HOH . C 3 HOH A 6 155 6 HOH HOH . C 3 HOH A 7 156 7 HOH HOH . C 3 HOH A 8 157 8 HOH HOH . C 3 HOH A 9 158 9 HOH HOH . C 3 HOH A 10 159 10 HOH HOH . C 3 HOH A 11 160 11 HOH HOH . C 3 HOH A 12 161 12 HOH HOH . C 3 HOH A 13 162 13 HOH HOH . C 3 HOH A 14 163 14 HOH HOH . C 3 HOH A 15 164 15 HOH HOH . C 3 HOH A 16 165 16 HOH HOH . C 3 HOH A 17 166 17 HOH HOH . C 3 HOH A 18 167 18 HOH HOH . C 3 HOH A 19 168 19 HOH HOH . C 3 HOH A 20 169 20 HOH HOH . C 3 HOH A 21 170 21 HOH HOH . C 3 HOH A 22 171 22 HOH HOH . C 3 HOH A 23 172 23 HOH HOH . C 3 HOH A 24 173 24 HOH HOH . C 3 HOH A 25 174 25 HOH HOH . C 3 HOH A 26 175 27 HOH HOH . C 3 HOH A 27 176 28 HOH HOH . C 3 HOH A 28 177 29 HOH HOH . C 3 HOH A 29 178 30 HOH HOH . C 3 HOH A 30 179 31 HOH HOH . C 3 HOH A 31 180 32 HOH HOH . C 3 HOH A 32 181 33 HOH HOH . C 3 HOH A 33 182 34 HOH HOH . C 3 HOH A 34 183 35 HOH HOH . C 3 HOH A 35 184 36 HOH HOH . C 3 HOH A 36 185 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . B 2 -15.564 -11.713 -0.962 1 61.55 ? P AMP 149 A 1 HETATM 2 O O1P AMP . . . B 2 -15.013 -12.224 -2.299 1 65.8 ? O1P AMP 149 A 1 HETATM 3 O O2P AMP . . . B 2 -15.181 -10.296 -0.609 1 52.68 ? O2P AMP 149 A 1 HETATM 4 O O3P AMP . . . B 2 -15.478 -12.725 0.164 1 56.47 ? O3P AMP 149 A 1 HETATM 5 O O5' AMP . . . B 2 -17.153 -11.726 -1.298 1 60.14 ? O5' AMP 149 A 1 HETATM 6 C C5' AMP . . . B 2 -18.237 -11.191 -0.546 1 51.62 ? C5' AMP 149 A 1 HETATM 7 C C4' AMP . . . B 2 -19.381 -10.901 -1.536 1 43.45 ? C4' AMP 149 A 1 HETATM 8 O O4' AMP . . . B 2 -18.875 -10.551 -2.834 1 39.7 ? O4' AMP 149 A 1 HETATM 9 C C3' AMP . . . B 2 -20.349 -12.034 -1.826 1 38.86 ? C3' AMP 149 A 1 HETATM 10 O O3' AMP . . . B 2 -21.446 -12.086 -0.921 1 38.46 ? O3' AMP 149 A 1 HETATM 11 C C2' AMP . . . B 2 -20.872 -11.666 -3.187 1 37.03 ? C2' AMP 149 A 1 HETATM 12 O O2' AMP . . . B 2 -21.842 -10.639 -2.973 1 36.86 ? O2' AMP 149 A 1 HETATM 13 C C1' AMP . . . B 2 -19.695 -11.049 -3.879 1 35.77 ? C1' AMP 149 A 1 HETATM 14 N N9 AMP . . . B 2 -18.963 -12.107 -4.588 1 39.15 ? N9 AMP 149 A 1 HETATM 15 C C8 AMP . . . B 2 -17.744 -12.626 -4.277 1 36.09 ? C8 AMP 149 A 1 HETATM 16 N N7 AMP . . . B 2 -17.413 -13.608 -5.159 1 36.14 ? N7 AMP 149 A 1 HETATM 17 C C5 AMP . . . B 2 -18.433 -13.695 -6.074 1 36.03 ? C5 AMP 149 A 1 HETATM 18 C C6 AMP . . . B 2 -18.742 -14.498 -7.281 1 35.09 ? C6 AMP 149 A 1 HETATM 19 N N6 AMP . . . B 2 -17.885 -15.456 -7.729 1 34.76 ? N6 AMP 149 A 1 HETATM 20 N N1 AMP . . . B 2 -19.908 -14.249 -7.921 1 35.7 ? N1 AMP 149 A 1 HETATM 21 C C2 AMP . . . B 2 -20.771 -13.322 -7.495 1 31.9 ? C2 AMP 149 A 1 HETATM 22 N N3 AMP . . . B 2 -20.579 -12.571 -6.39 1 35.58 ? N3 AMP 149 A 1 HETATM 23 C C4 AMP . . . B 2 -19.439 -12.703 -5.677 1 34.06 ? C4 AMP 149 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #