data_3TO0 # _model_server_result.job_id WN3PDzj2fGg91gmU-PgzDA _model_server_result.datetime_utc '2024-11-24 03:32:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3to0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 3TO0 # _exptl.entry_id 3TO0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3TO0 _cell.length_a 87.27 _cell.length_b 87.27 _cell.length_c 62.725 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TO0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 89 n n N1 C10 FMN doub 90 n n C2 O2 FMN doub 91 n n C2 N3 FMN sing 92 n n N3 C4 FMN sing 93 n n N3 HN3 FMN sing 94 n n C4 O4 FMN doub 95 n n C4 C4A FMN sing 96 n n C4A N5 FMN doub 97 n n C4A C10 FMN sing 98 n n N5 C5A FMN sing 99 n n C5A C6 FMN doub 100 n y C5A C9A FMN sing 101 n y C6 C7 FMN sing 102 n y C6 H6 FMN sing 103 n n C7 C7M FMN sing 104 n n C7 C8 FMN doub 105 n y C7M HM71 FMN sing 106 n n C7M HM72 FMN sing 107 n n C7M HM73 FMN sing 108 n n C8 C8M FMN sing 109 n n C8 C9 FMN sing 110 n y C8M HM81 FMN sing 111 n n C8M HM82 FMN sing 112 n n C8M HM83 FMN sing 113 n n C9 C9A FMN doub 114 n y C9 H9 FMN sing 115 n n C9A N10 FMN sing 116 n n N10 C10 FMN sing 117 n n N10 C1' FMN sing 118 n n C1' C2' FMN sing 119 n n C1' "H1'1" FMN sing 120 n n C1' "H1'2" FMN sing 121 n n C2' O2' FMN sing 122 n n C2' C3' FMN sing 123 n n C2' H2' FMN sing 124 n n O2' HO2' FMN sing 125 n n C3' O3' FMN sing 126 n n C3' C4' FMN sing 127 n n C3' H3' FMN sing 128 n n O3' HO3' FMN sing 129 n n C4' O4' FMN sing 130 n n C4' C5' FMN sing 131 n n C4' H4' FMN sing 132 n n O4' HO4' FMN sing 133 n n C5' O5' FMN sing 134 n n C5' "H5'1" FMN sing 135 n n C5' "H5'2" FMN sing 136 n n O5' P FMN sing 137 n n P O1P FMN doub 138 n n P O2P FMN sing 139 n n P O3P FMN sing 140 n n O2P HOP2 FMN sing 141 n n O3P HOP3 FMN sing 142 n n # _atom_sites.entry_id 3TO0 _atom_sites.fract_transf_matrix[1][1] 0.011459 _atom_sites.fract_transf_matrix[1][2] 0.006616 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013231 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015943 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 301 301 FMN FMN . D 3 PO4 A 1 303 303 PO4 PO4 . E 4 ACT A 1 302 302 ACT ACT . F 4 ACT B 1 302 302 ACT ACT . G 2 FMN B 1 301 301 FMN FMN . H 3 PO4 B 1 303 303 PO4 PO4 . I 5 HOH A 1 1 1 HOH HOH . I 5 HOH A 2 4 4 HOH HOH . I 5 HOH A 3 5 5 HOH HOH . I 5 HOH A 4 7 7 HOH HOH . I 5 HOH A 5 8 8 HOH HOH . I 5 HOH A 6 10 10 HOH HOH . I 5 HOH A 7 15 15 HOH HOH . I 5 HOH A 8 16 16 HOH HOH . I 5 HOH A 9 17 17 HOH HOH . I 5 HOH A 10 20 20 HOH HOH . I 5 HOH A 11 21 21 HOH HOH . I 5 HOH A 12 22 22 HOH HOH . I 5 HOH A 13 24 24 HOH HOH . I 5 HOH A 14 25 25 HOH HOH . I 5 HOH A 15 26 26 HOH HOH . I 5 HOH A 16 292 33 HOH HOH . I 5 HOH A 17 293 34 HOH HOH . I 5 HOH A 18 294 36 HOH HOH . I 5 HOH A 19 295 37 HOH HOH . I 5 HOH A 20 296 38 HOH HOH . I 5 HOH A 21 297 39 HOH HOH . I 5 HOH A 22 298 44 HOH HOH . I 5 HOH A 23 299 45 HOH HOH . I 5 HOH A 24 300 46 HOH HOH . I 5 HOH A 25 304 47 HOH HOH . I 5 HOH A 26 305 48 HOH HOH . I 5 HOH A 27 306 49 HOH HOH . I 5 HOH A 28 307 50 HOH HOH . J 5 HOH B 1 2 2 HOH HOH . J 5 HOH B 2 3 3 HOH HOH . J 5 HOH B 3 6 6 HOH HOH . J 5 HOH B 4 9 9 HOH HOH . J 5 HOH B 5 11 11 HOH HOH . J 5 HOH B 6 12 12 HOH HOH . J 5 HOH B 7 13 13 HOH HOH . J 5 HOH B 8 14 14 HOH HOH . J 5 HOH B 9 18 18 HOH HOH . J 5 HOH B 10 19 19 HOH HOH . J 5 HOH B 11 23 23 HOH HOH . J 5 HOH B 12 27 27 HOH HOH . J 5 HOH B 13 28 28 HOH HOH . J 5 HOH B 14 29 29 HOH HOH . J 5 HOH B 15 30 30 HOH HOH . J 5 HOH B 16 31 31 HOH HOH . J 5 HOH B 17 32 32 HOH HOH . J 5 HOH B 18 292 35 HOH HOH . J 5 HOH B 19 293 40 HOH HOH . J 5 HOH B 20 294 41 HOH HOH . J 5 HOH B 21 295 42 HOH HOH . J 5 HOH B 22 296 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 2 10.785 22.732 4.368 1 18.27 ? N1 FMN 301 A 1 HETATM 2 C C2 FMN . . . C 2 11.326 21.948 5.351 1 27.54 ? C2 FMN 301 A 1 HETATM 3 O O2 FMN . . . C 2 10.686 21.822 6.405 1 32.17 ? O2 FMN 301 A 1 HETATM 4 N N3 FMN . . . C 2 12.558 21.334 5.16 1 13.45 ? N3 FMN 301 A 1 HETATM 5 C C4 FMN . . . C 2 13.265 21.484 3.998 1 27.99 ? C4 FMN 301 A 1 HETATM 6 O O4 FMN . . . C 2 14.353 20.915 3.843 1 31.69 ? O4 FMN 301 A 1 HETATM 7 C C4A FMN . . . C 2 12.72 22.284 3.005 1 36.65 ? C4A FMN 301 A 1 HETATM 8 N N5 FMN . . . C 2 13.387 22.467 1.808 1 38.42 ? N5 FMN 301 A 1 HETATM 9 C C5A FMN . . . C 2 12.812 23.265 0.84 1 26.18 ? C5A FMN 301 A 1 HETATM 10 C C6 FMN . . . C 2 13.45 23.458 -0.371 1 35 ? C6 FMN 301 A 1 HETATM 11 C C7 FMN . . . C 2 12.865 24.25 -1.36 1 33.45 ? C7 FMN 301 A 1 HETATM 12 C C7M FMN . . . C 2 13.638 24.419 -2.645 1 28.97 ? C7M FMN 301 A 1 HETATM 13 C C8 FMN . . . C 2 11.617 24.846 -1.126 1 12.66 ? C8 FMN 301 A 1 HETATM 14 C C8M FMN . . . C 2 10.905 25.735 -2.107 1 15.32 ? C8M FMN 301 A 1 HETATM 15 C C9 FMN . . . C 2 10.988 24.647 0.084 1 15.79 ? C9 FMN 301 A 1 HETATM 16 C C9A FMN . . . C 2 11.582 23.871 1.058 1 25.42 ? C9A FMN 301 A 1 HETATM 17 N N10 FMN . . . C 2 10.925 23.697 2.254 1 29.83 ? N10 FMN 301 A 1 HETATM 18 C C10 FMN . . . C 2 11.491 22.901 3.215 1 22.42 ? C10 FMN 301 A 1 HETATM 19 C C1' FMN . . . C 2 9.585 24.333 2.497 1 16.77 ? C1' FMN 301 A 1 HETATM 20 C C2' FMN . . . C 2 9.793 25.763 2.924 1 11.95 ? C2' FMN 301 A 1 HETATM 21 O O2' FMN . . . C 2 10.42 25.787 4.182 1 18.91 ? O2' FMN 301 A 1 HETATM 22 C C3' FMN . . . C 2 8.422 26.398 3.023 1 17.53 ? C3' FMN 301 A 1 HETATM 23 O O3' FMN . . . C 2 7.881 26.434 1.725 1 15.59 ? O3' FMN 301 A 1 HETATM 24 C C4' FMN . . . C 2 8.535 27.813 3.587 1 21.11 ? C4' FMN 301 A 1 HETATM 25 O O4' FMN . . . C 2 8.592 27.762 4.994 1 30.94 ? O4' FMN 301 A 1 HETATM 26 C C5' FMN . . . C 2 7.312 28.629 3.215 1 19.06 ? C5' FMN 301 A 1 HETATM 27 O O5' FMN . . . C 2 6.19 28.119 3.912 1 10.78 ? O5' FMN 301 A 1 HETATM 28 P P FMN . . . C 2 4.868 27.764 3.073 1 25.26 ? P FMN 301 A 1 HETATM 29 O O1P FMN . . . C 2 3.827 27.229 4.042 1 20.09 ? O1P FMN 301 A 1 HETATM 30 O O2P FMN . . . C 2 5.226 26.707 2.034 1 22.99 ? O2P FMN 301 A 1 HETATM 31 O O3P FMN . . . C 2 4.398 29.014 2.336 1 24.77 ? O3P FMN 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #