data_3TO8
#
_model_server_result.job_id            jmedjL_wB8rauwrDflM1-A 
_model_server_result.datetime_utc      '2025-03-12 04:43:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3to8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":590}' 
#
_entry.id    3TO8 
#
_exptl.entry_id    3TO8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3TO8 
_cell.length_a            36.569 
_cell.length_b            56.545 
_cell.length_c            88.736 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3TO8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 E N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3TO8 
_atom_sites.fract_transf_matrix[1][1]    0.027346 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017685 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011269 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 1 1 SO4 SO4 . 
C 3 GOL A 1 590 1 GOL GOL . 
D 4 PEG A 1 591 1 PEG PEO . 
E 3 GOL A 1 2 2 GOL GOL . 
F 5 HOH A 1 3 3 HOH HOH . 
F 5 HOH A 2 4 4 HOH HOH . 
F 5 HOH A 3 5 5 HOH HOH . 
F 5 HOH A 4 6 6 HOH HOH . 
F 5 HOH A 5 7 7 HOH HOH . 
F 5 HOH A 6 8 8 HOH HOH . 
F 5 HOH A 7 9 9 HOH HOH . 
F 5 HOH A 8 10 10 HOH HOH . 
F 5 HOH A 9 11 11 HOH HOH . 
F 5 HOH A 10 12 12 HOH HOH . 
F 5 HOH A 11 13 13 HOH HOH . 
F 5 HOH A 12 14 14 HOH HOH . 
F 5 HOH A 13 15 15 HOH HOH . 
F 5 HOH A 14 16 16 HOH HOH . 
F 5 HOH A 15 17 17 HOH HOH . 
F 5 HOH A 16 18 18 HOH HOH . 
F 5 HOH A 17 19 19 HOH HOH . 
F 5 HOH A 18 20 20 HOH HOH . 
F 5 HOH A 19 21 21 HOH HOH . 
F 5 HOH A 20 22 22 HOH HOH . 
F 5 HOH A 21 23 23 HOH HOH . 
F 5 HOH A 22 24 24 HOH HOH . 
F 5 HOH A 23 25 25 HOH HOH . 
F 5 HOH A 24 26 26 HOH HOH . 
F 5 HOH A 25 27 27 HOH HOH . 
F 5 HOH A 26 28 28 HOH HOH . 
F 5 HOH A 27 29 29 HOH HOH . 
F 5 HOH A 28 30 30 HOH HOH . 
F 5 HOH A 29 31 31 HOH HOH . 
F 5 HOH A 30 32 32 HOH HOH . 
F 5 HOH A 31 33 33 HOH HOH . 
F 5 HOH A 32 34 34 HOH HOH . 
F 5 HOH A 33 35 35 HOH HOH . 
F 5 HOH A 34 36 36 HOH HOH . 
F 5 HOH A 35 37 37 HOH HOH . 
F 5 HOH A 36 38 38 HOH HOH . 
F 5 HOH A 37 39 39 HOH HOH . 
F 5 HOH A 38 40 40 HOH HOH . 
F 5 HOH A 39 41 41 HOH HOH . 
F 5 HOH A 40 42 42 HOH HOH . 
F 5 HOH A 41 43 43 HOH HOH . 
F 5 HOH A 42 44 44 HOH HOH . 
F 5 HOH A 43 45 45 HOH HOH . 
F 5 HOH A 44 46 46 HOH HOH . 
F 5 HOH A 45 47 47 HOH HOH . 
F 5 HOH A 46 48 48 HOH HOH . 
F 5 HOH A 47 49 49 HOH HOH . 
F 5 HOH A 48 50 50 HOH HOH . 
F 5 HOH A 49 51 51 HOH HOH . 
F 5 HOH A 50 52 52 HOH HOH . 
F 5 HOH A 51 53 53 HOH HOH . 
F 5 HOH A 52 54 54 HOH HOH . 
F 5 HOH A 53 55 55 HOH HOH . 
F 5 HOH A 54 56 56 HOH HOH . 
F 5 HOH A 55 57 57 HOH HOH . 
F 5 HOH A 56 58 58 HOH HOH . 
F 5 HOH A 57 59 59 HOH HOH . 
F 5 HOH A 58 60 60 HOH HOH . 
F 5 HOH A 59 61 61 HOH HOH . 
F 5 HOH A 60 62 62 HOH HOH . 
F 5 HOH A 61 63 63 HOH HOH . 
F 5 HOH A 62 64 64 HOH HOH . 
F 5 HOH A 63 65 65 HOH HOH . 
F 5 HOH A 64 66 66 HOH HOH . 
F 5 HOH A 65 67 67 HOH HOH . 
F 5 HOH A 66 68 68 HOH HOH . 
F 5 HOH A 67 69 69 HOH HOH . 
F 5 HOH A 68 70 70 HOH HOH . 
F 5 HOH A 69 71 71 HOH HOH . 
F 5 HOH A 70 592 1 HOH HOH . 
F 5 HOH A 71 593 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 2.132 4.135 -18.942 1 20.81 ? C1 GOL 590 A 1 
HETATM 2 O O1 GOL . . . C 3 1.215 4.117 -20.014 1 18.21 ? O1 GOL 590 A 1 
HETATM 3 C C2 GOL . . . C 3 3.526 4.409 -19.505 1 21.35 ? C2 GOL 590 A 1 
HETATM 4 O O2 GOL . . . C 3 3.852 3.444 -20.477 1 22.21 ? O2 GOL 590 A 1 
HETATM 5 C C3 GOL . . . C 3 4.523 4.312 -18.357 1 22.64 ? C3 GOL 590 A 1 
HETATM 6 O O3 GOL . . . C 3 5.817 4.468 -18.89 1 25.51 ? O3 GOL 590 A 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           349 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#